View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_90 (Length: 214)
Name: NF5921_low_90
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_90 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 564813 - 564996
Alignment:
| Q |
19 |
tcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatctgtgttaatggaaggttgatttggtt |
118 |
Q |
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| T |
564813 |
tcacaatggggactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttaggctctgatccgtgttaatggaaggttgatttggtt |
564912 |
T |
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| Q |
119 |
aattaaataggataattaagacaagaacaaaacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagaataatttac |
204 |
Q |
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| T |
564913 |
aattaaataagataattaagacaagaac--aacaaacggctagttgtcatgttgtacatatgatagtgtaaacaagagtaatttac |
564996 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 874139 - 874194
Alignment:
| Q |
29 |
gactgaaaccacagcaatgtgtgtttttctttccatggaaatttgattagtttagg |
84 |
Q |
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| T |
874139 |
gacttaaaccaaagcaatgaatgtttttctatccatggaaatttgattagtttagg |
874194 |
T |
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