View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_93 (Length: 201)
Name: NF5921_low_93
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_93 |
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| [»] scaffold0141 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 8449449 - 8449264
Alignment:
| Q |
1 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8449449 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagc |
8449350 |
T |
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| Q |
101 |
tatgcacattgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
186 |
Q |
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| T |
8449349 |
tatgcacattgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
8449264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8429962 - 8430147
Alignment:
| Q |
1 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
8429962 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagc |
8430061 |
T |
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| Q |
101 |
tatgcacattgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
186 |
Q |
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| T |
8430062 |
tatgcacattgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
8430147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 7586 - 7401
Alignment:
| Q |
1 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7586 |
tgttagtcactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagc |
7487 |
T |
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| Q |
101 |
tatgcacattgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
186 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7486 |
tatgcacattgcaagcttaatctttgctttaatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
7401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 4238742 - 4238600
Alignment:
| Q |
8 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagctatgcac |
107 |
Q |
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|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |
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| T |
4238742 |
cactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaatctatgcac |
4238643 |
T |
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| Q |
108 |
attgcaagcttaatctttgctttcatggagtttgagattacct |
150 |
Q |
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| T |
4238642 |
attgcaagcttaacctttgctttcatggagtttgagattacct |
4238600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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