View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5922-Insertion-2 (Length: 504)
Name: NF5922-Insertion-2
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 14870427 - 14869931
Alignment:
| Q |
8 |
agttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaaccnnnnnnncaagtttgaatgacttaagctcctcaatt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14870427 |
agttccaatgtagaatgatgcttactaagttgataccaaatcaacctccaatttgttattaacctttttttcaagtttgaatgacttaagctcctcaatt |
14870328 |
T |
|
| Q |
108 |
agttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctcatttctaaacactctt |
207 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870327 |
agttgtttcaacttagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgctttagctttcttcctcatttctaaacactctt |
14870228 |
T |
|
| Q |
208 |
ctccacctcccatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactcattccagtttctccattcctttgctccaac |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870227 |
ctccacctcccatcaataaacctattgcctttcctatctcatccctcttaaccacatcatccccaaactcattccagtttctccattcctttgctccaac |
14870128 |
T |
|
| Q |
308 |
tgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctgcatttacactt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14870127 |
tgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatgacaaacctgcatttacactt |
14870028 |
T |
|
| Q |
408 |
tccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagc |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14870027 |
tccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaatagc |
14869931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 79 - 504
Target Start/End: Original strand, 16908303 - 16908728
Alignment:
| Q |
79 |
caagtttgaatgacttaagctcctcaattagttgtttcaacccagtgtatgaagaaccaccaacctctatagctttctttgcagcaccactaagtgcttt |
178 |
Q |
| |
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||||||| ||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16908303 |
caagtttaaatgacttaagctcctcaattagttctttcaacttagtataagaagaaccaccaacctcaatagctttctttgcagcaccactaagtgcttt |
16908402 |
T |
|
| Q |
179 |
agctttcttcctcatttctaaacactcttctccacctcccatcaataaacctattgcctttcctatctgatccctcttaaccacatcatccccaaactca |
278 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| |
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|
| T |
16908403 |
aactcttttcctcatttctaaacactcttctccacctcccatcaataaacctattgcctttcctatatcctccctcttcaccacatcatccccaaactca |
16908502 |
T |
|
| Q |
279 |
ttccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag |
378 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908503 |
ttccaatttctccattcttttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaag |
16908602 |
T |
|
| Q |
379 |
ttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttg |
478 |
Q |
| |
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| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||| |||||||||||||||| || || |
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| T |
16908603 |
tagccaatggtaaacctgcatttacactttccataatagtgttccacccacaatgagtcacaacagctccaactgcaccatgctctagtatcagaagctg |
16908702 |
T |
|
| Q |
479 |
tggtgcccaaccccatatcaaatagc |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
16908703 |
tggtgcccaaccccatatcaaatagc |
16908728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 269 - 504
Target Start/End: Original strand, 5994740 - 5994975
Alignment:
| Q |
269 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaac |
368 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| || | |||||||| |||||||||||||| | | | ||||||||||||| ||||||||||| |
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| T |
5994740 |
cccaaactcattccaattcctccattctttagctcccacaggaacaccaattttcaacacatcaactacaagtttctcattgaaaaaatgttcagcaaat |
5994839 |
T |
|
| Q |
369 |
aatggccaagttgccaatggcaaacctgcatttacactttccataatagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagta |
468 |
Q |
| |
|
|| ||||| || | ||| || || |||| |||||||| | || ||||||||| ||||| ||| |||| | |||||| |||| || ||| |||| |
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| T |
5994840 |
aaaggccatgtcactgttggtaacccaacattcacactttcaacaacagtgttccaaccacaatgactcactaaccctccaattgcatgattctcaagta |
5994939 |
T |
|
| Q |
469 |
tcagcagttgtggtgcccaaccccatatcaaatagc |
504 |
Q |
| |
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||| || ||||||||||| ||||| |||||||||| |
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| T |
5994940 |
tcaaaagctgtggtgcccatccccaaatcaaatagc |
5994975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 379
Target Start/End: Original strand, 17572351 - 17572461
Alignment:
| Q |
269 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaac |
368 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | || ||||| ||||||||||||| | ||| ||||||| ||||| |||||||||||| |
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| T |
17572351 |
cccaaactcattccaatttctccattctttggccccaacagataccccaattctcaacacatcaacaaccaacttctcattaaaaaaatgttcagcaaac |
17572450 |
T |
|
| Q |
369 |
aatggccaagt |
379 |
Q |
| |
|
|| |||||||| |
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|
| T |
17572451 |
aaaggccaagt |
17572461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 17620367 - 17620259
Alignment:
| Q |
269 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
367 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | || ||||| |||||||||||| || |||| ||||||| ||||| || |||||||| |
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|
| T |
17620367 |
cccaaactcattccaatttctccattctttagccccaacagaaaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
17620269 |
T |
|
| Q |
368 |
caatggccaa |
377 |
Q |
| |
|
||| |||||| |
|
|
| T |
17620268 |
caaaggccaa |
17620259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 44904108 - 44904029
Alignment:
| Q |
297 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca |
376 |
Q |
| |
|
||||||||||||| || || |||||||| |||||||| | ||| ||||||||| |||| ||||||||||||| |||||| |
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|
| T |
44904108 |
tttgctccaactgggacccctatcttcaaaacatcaacaagcaacctctcattgtaaaattgttcagcaaacattggcca |
44904029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 377
Target Start/End: Original strand, 14709948 - 14710056
Alignment:
| Q |
269 |
cccaaactcattccagtttctccattcctttgctccaactgccacaccaatcttcaacacatcaaccaacaatc-tctcattgaaaaactgttcagcaaa |
367 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| | ||| ||||| |||||||||||| || |||| ||||||| ||||| || |||||||| |
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|
| T |
14709948 |
cccaaactcattccaatttctccattctttagccccaacagacaccccaattctcaacacatcaa-taataatcttctcattaaaaaattgatcagcaaa |
14710046 |
T |
|
| Q |
368 |
caatggccaa |
377 |
Q |
| |
|
||| |||||| |
|
|
| T |
14710047 |
caaaggccaa |
14710056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 26208266 - 26208187
Alignment:
| Q |
297 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggcca |
376 |
Q |
| |
|
|||| |||||||| || ||||||||||| |||||||| | |||| |||||||| |||| || |||||||||| |||||| |
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|
| T |
26208266 |
tttgatccaactgaaactccaatcttcaaaacatcaacaagcaatttctcattgtaaaattgctcagcaaacattggcca |
26208187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 439
Target Start/End: Complemental strand, 26204740 - 26204598
Alignment:
| Q |
297 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg |
396 |
Q |
| |
|
|||| |||||| || || ||||||||||| |||||||| | || |||||||| |||| ||||||||||| | |||||| ||| || ||||||||| | |
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|
| T |
26204740 |
tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag |
26204641 |
T |
|
| Q |
397 |
catttacactttccataatagtgttccagccacagtgagtcac |
439 |
Q |
| |
|
||| | ||||| | ||| | |||||| |||||||||||||| |
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|
| T |
26204640 |
aattcaagctttcaagaattgagttccaaccacagtgagtcac |
26204598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 439
Target Start/End: Complemental strand, 26224377 - 26224235
Alignment:
| Q |
297 |
tttgctccaactgccacaccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctg |
396 |
Q |
| |
|
|||| |||||| || || ||||||||||| |||||||| | || |||||||| |||| ||||||||||| | |||||| ||| || ||||||||| | |
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|
| T |
26224377 |
tttgatccaaccgcgactccaatcttcaaaacatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccag |
26224278 |
T |
|
| Q |
397 |
catttacactttccataatagtgttccagccacagtgagtcac |
439 |
Q |
| |
|
||| | ||||| | ||| | |||||| |||||||||||||| |
|
|
| T |
26224277 |
aattcaagctttcaagaattgagttccaaccacagtgagtcac |
26224235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 502
Target Start/End: Original strand, 14710144 - 14710181
Alignment:
| Q |
465 |
agtatcagcagttgtggtgcccaaccccatatcaaata |
502 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
14710144 |
agtatcaacatttgtggtgcccaaccccatatcaaata |
14710181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 502
Target Start/End: Complemental strand, 12613833 - 12613646
Alignment:
| Q |
315 |
ccaatcttcaacacatcaaccaacaatctctcattgaaaaactgttcagcaaacaatggccaagttgccaatggcaaacctgcatttacactttccataa |
414 |
Q |
| |
|
||||| || ||||| ||||||| |||| |||||| ||||| ||||||||||| || |||||||| ||| ||||| || |||| | |||||| | | |
|
|
| T |
12613833 |
ccaatttttaacacttcaaccaccaatttctcatgaaaaaattgttcagcaaataaaggccaagtcaccataggcaacccaacattcaaactttcaacta |
12613734 |
T |
|
| Q |
415 |
tagtgttccagccacagtgagtcaccactgctccaactgcagcatgctctagtatcagcagttgtggtgcccaaccccatatcaaata |
502 |
Q |
| |
|
|||||||| ||||| |||||||| | | |||||| || | ||| ||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
12613733 |
ctgtgttccaaccacaatgagtcacaattcctccaatagctttgttctcaagtatcaacaattgtggtgcccaaccccatatcaaata |
12613646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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