View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5922_high_2 (Length: 534)
Name: NF5922_high_2
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 5581678 - 5581751
Alignment:
| Q |
186 |
ctcattctcattggggtaacatattattctcttcatacaaattatgtattttacaattttgtttttgatgtctc |
259 |
Q |
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| T |
5581678 |
ctcattctcattcgggtaacattttattctcttcatacaaattatgtattttgcaattttttttttgatgtctc |
5581751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 366 - 475
Target Start/End: Complemental strand, 5559926 - 5559814
Alignment:
| Q |
366 |
aaactgaatttggctgataacaatttctattcttccattccatgaatattcagcaagtt---gaaattaacttatttgaatttgtcagatgctagatttg |
462 |
Q |
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| T |
5559926 |
aaactgaatttggctgataactatttcaattcttccattccatcaggattcaacaagttggagaagttgacatatctgaatttgtcatatgctagctttg |
5559827 |
T |
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| Q |
463 |
tgggacagattcc |
475 |
Q |
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| T |
5559826 |
tggggcaaattcc |
5559814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 5894494 - 5894609
Alignment:
| Q |
366 |
aaactgaatttggctgataacaatttctattcttccattccatgaatattcagcaagttg---aaattaacttatttgaatttgtcagatgctagatttg |
462 |
Q |
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| T |
5894494 |
aaactgaacttggcttataacaatttcaattctctaattccatcaggattcagcaaattggagaagttgacttatctgaatttgtcaaaggctagctttg |
5894593 |
T |
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| Q |
463 |
tgggacagattccaat |
478 |
Q |
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| T |
5894594 |
tggggcagattccaat |
5894609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 5603415 - 5603447
Alignment:
| Q |
93 |
aatgtatcttcaaagttccaatacatatcatca |
125 |
Q |
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| T |
5603415 |
aatgtatcttcaaagttccaatacatatcatca |
5603447 |
T |
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