View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5922_high_5 (Length: 400)

Name: NF5922_high_5
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5922_high_5
NF5922_high_5
[»] chr3 (26 HSPs)
chr3 (39-385)||(52204120-52204467)
chr3 (44-290)||(27164028-27164274)
chr3 (61-328)||(52695580-52695849)
chr3 (39-359)||(46979347-46979669)
chr3 (49-141)||(52203965-52204057)
chr3 (53-214)||(40614775-40614935)
chr3 (62-214)||(20369265-20369415)
chr3 (39-300)||(7629191-7629452)
chr3 (44-204)||(38489726-38489887)
chr3 (49-188)||(20179038-20179174)
chr3 (49-204)||(29324043-29324199)
chr3 (49-227)||(20619202-20619379)
chr3 (117-330)||(51241338-51241541)
chr3 (39-159)||(45472607-45472727)
chr3 (39-159)||(32835245-32835366)
chr3 (53-204)||(35296386-35296536)
chr3 (166-359)||(43471583-43471777)
chr3 (148-358)||(39615142-39615352)
chr3 (50-183)||(36504805-36504937)
chr3 (252-323)||(36172147-36172218)
chr3 (52-198)||(1341681-1341829)
chr3 (245-345)||(36504653-36504753)
chr3 (252-315)||(24120913-24120976)
chr3 (237-323)||(45472455-45472539)
chr3 (252-300)||(12176695-12176743)
chr3 (252-300)||(16343032-16343080)
[»] chr7 (24 HSPs)
chr7 (39-359)||(45648218-45648540)
chr7 (39-359)||(47843761-47844083)
chr7 (39-315)||(42040451-42040730)
chr7 (39-315)||(48152880-48153159)
chr7 (31-346)||(3751481-3751799)
chr7 (53-284)||(34471642-34471874)
chr7 (44-198)||(40836356-40836511)
chr7 (49-198)||(43495758-43495908)
chr7 (39-346)||(45491977-45492290)
chr7 (70-291)||(2185763-2185986)
chr7 (49-198)||(22201069-22201217)
chr7 (49-198)||(22236604-22236752)
chr7 (71-340)||(31397217-31397488)
chr7 (247-360)||(45804739-45804852)
chr7 (65-339)||(48138325-48138601)
chr7 (252-357)||(24699651-24699756)
chr7 (123-311)||(25482695-25482883)
chr7 (75-171)||(42509175-42509269)
chr7 (252-291)||(44798409-44798448)
chr7 (39-113)||(7857940-7858014)
chr7 (39-120)||(25310999-25311080)
chr7 (252-291)||(9229554-9229593)
chr7 (252-294)||(2483638-2483680)
chr7 (52-113)||(25482611-25482672)
[»] chr2 (30 HSPs)
chr2 (49-322)||(36467052-36467325)
chr2 (39-346)||(7017652-7017963)
chr2 (38-315)||(11562719-11562993)
chr2 (49-289)||(35298312-35298554)
chr2 (39-188)||(41323867-41324017)
chr2 (39-315)||(38221608-38221886)
chr2 (39-200)||(42794768-42794930)
chr2 (44-213)||(37272909-37273078)
chr2 (39-199)||(30485559-30485719)
chr2 (52-204)||(16496802-16496955)
chr2 (39-238)||(17328636-17328835)
chr2 (96-320)||(40498426-40498652)
chr2 (69-198)||(2788872-2789001)
chr2 (52-198)||(3353078-3353228)
chr2 (62-346)||(38140401-38140690)
chr2 (107-204)||(35428727-35428824)
chr2 (39-167)||(38558643-38558769)
chr2 (244-323)||(42794943-42795022)
chr2 (69-183)||(44364254-44364368)
chr2 (44-112)||(40498676-40498744)
chr2 (52-315)||(26352443-26352705)
chr2 (161-315)||(30382908-30383063)
chr2 (305-361)||(36925371-36925427)
chr2 (252-323)||(14749411-14749482)
chr2 (254-359)||(35428582-35428688)
chr2 (39-204)||(40363774-40363940)
chr2 (95-172)||(18561094-18561171)
chr2 (252-359)||(18858273-18858380)
chr2 (39-138)||(30382804-30382903)
chr2 (94-159)||(21812979-21813044)
[»] chr8 (22 HSPs)
chr8 (31-349)||(25429837-25430159)
chr8 (31-359)||(24888754-24889085)
chr8 (39-315)||(11789368-11789646)
chr8 (49-291)||(6166309-6166552)
chr8 (43-330)||(12006553-12006837)
chr8 (39-204)||(32855981-32856146)
chr8 (39-323)||(9409774-9410058)
chr8 (62-299)||(13003232-13003466)
chr8 (49-204)||(18928566-18928721)
chr8 (71-359)||(17748925-17749215)
chr8 (39-204)||(23877387-23877553)
chr8 (122-204)||(24728632-24728715)
chr8 (49-322)||(11990590-11990863)
chr8 (161-315)||(11755785-11755940)
chr8 (62-146)||(18320731-18320814)
chr8 (112-231)||(16591524-16591642)
chr8 (49-195)||(31431397-31431544)
chr8 (49-199)||(9136733-9136883)
chr8 (161-201)||(18320690-18320730)
chr8 (83-158)||(37231784-37231859)
chr8 (44-102)||(11755705-11755763)
chr8 (252-289)||(35536811-35536848)
[»] chr6 (14 HSPs)
chr6 (39-362)||(688074-688399)
chr6 (49-291)||(2988133-2988376)
chr6 (39-323)||(2032350-2032637)
chr6 (49-323)||(12312028-12312303)
chr6 (44-311)||(8485797-8486064)
chr6 (39-359)||(10229251-10229573)
chr6 (44-278)||(32340276-32340509)
chr6 (44-146)||(30928334-30928436)
chr6 (252-323)||(12283903-12283974)
chr6 (69-183)||(22053869-22053983)
chr6 (252-322)||(7495258-7495328)
chr6 (88-204)||(22297370-22297486)
chr6 (52-158)||(6724483-6724590)
chr6 (39-97)||(10567349-10567407)
[»] chr4 (31 HSPs)
chr4 (39-301)||(4775659-4775918)
chr4 (42-339)||(45773839-45774134)
chr4 (39-315)||(2295225-2295502)
chr4 (50-356)||(47922951-47923260)
chr4 (44-199)||(53586368-53586524)
chr4 (51-315)||(10037870-10038137)
chr4 (39-198)||(44987234-44987394)
chr4 (39-291)||(35103508-35103762)
chr4 (65-199)||(35823608-35823742)
chr4 (128-237)||(24913782-24913890)
chr4 (39-288)||(53018559-53018810)
chr4 (49-299)||(15476750-15477002)
chr4 (49-204)||(24917499-24917643)
chr4 (39-266)||(19721701-19721930)
chr4 (52-289)||(40217435-40217673)
chr4 (68-204)||(27675401-27675539)
chr4 (53-176)||(28102017-28102139)
chr4 (245-315)||(4214134-4214204)
chr4 (252-292)||(47724801-47724841)
chr4 (255-323)||(53586253-53586321)
chr4 (166-322)||(34075281-34075438)
chr4 (244-298)||(2243064-2243118)
chr4 (94-204)||(45661801-45661911)
chr4 (39-151)||(6008221-6008333)
chr4 (245-301)||(27675303-27675359)
chr4 (49-102)||(1052369-1052422)
chr4 (253-346)||(7208693-7208786)
chr4 (255-339)||(1052196-1052280)
chr4 (107-163)||(2242922-2242978)
chr4 (107-231)||(4110251-4110374)
chr4 (254-314)||(28103609-28103669)
[»] scaffold0565 (1 HSPs)
scaffold0565 (62-315)||(7753-8008)
[»] chr1 (28 HSPs)
chr1 (42-315)||(31513615-31513890)
chr1 (39-340)||(14286844-14287147)
chr1 (49-323)||(11767650-11767926)
chr1 (44-323)||(40693772-40694054)
chr1 (39-323)||(17116090-17116378)
chr1 (39-291)||(13558358-13558610)
chr1 (51-298)||(4973086-4973337)
chr1 (44-198)||(16122756-16122912)
chr1 (51-292)||(4966555-4966800)
chr1 (49-199)||(38682926-38683077)
chr1 (49-204)||(270896-271050)
chr1 (75-204)||(10443528-10443657)
chr1 (39-156)||(50726663-50726780)
chr1 (88-204)||(13643778-13643894)
chr1 (253-330)||(30902574-30902651)
chr1 (39-321)||(51898929-51899213)
chr1 (252-346)||(17936410-17936504)
chr1 (185-355)||(40032453-40032628)
chr1 (252-292)||(50727123-50727163)
chr1 (107-198)||(29488210-29488301)
chr1 (192-299)||(10443401-10443508)
chr1 (65-199)||(50709492-50709630)
chr1 (63-142)||(46594245-46594324)
chr1 (71-290)||(22791116-22791338)
chr1 (139-220)||(41827628-41827709)
chr1 (80-201)||(781814-781937)
chr1 (318-358)||(22791367-22791407)
chr1 (244-288)||(50726540-50726584)
[»] chr5 (21 HSPs)
chr5 (49-322)||(7056947-7057218)
chr5 (39-323)||(29231072-29231358)
chr5 (38-359)||(3387087-3387409)
chr5 (136-359)||(19100124-19100349)
chr5 (44-204)||(13407260-13407420)
chr5 (44-204)||(2627962-2628124)
chr5 (53-204)||(27925522-27925673)
chr5 (27-360)||(31113980-31114314)
chr5 (42-204)||(26564917-26565080)
chr5 (49-196)||(5836480-5836627)
chr5 (39-166)||(32076531-32076658)
chr5 (44-322)||(39935459-39935734)
chr5 (44-204)||(34510804-34510965)
chr5 (75-194)||(31210891-31211010)
chr5 (49-199)||(16756081-16756231)
chr5 (177-359)||(34764723-34764905)
chr5 (39-193)||(41368580-41368733)
chr5 (51-142)||(8229316-8229407)
chr5 (52-194)||(12118286-12118426)
chr5 (72-300)||(42990547-42990778)
chr5 (258-315)||(32076657-32076714)
[»] scaffold0495 (1 HSPs)
scaffold0495 (39-359)||(5969-6288)
[»] scaffold0581 (1 HSPs)
scaffold0581 (129-189)||(10046-10106)
[»] scaffold0015 (1 HSPs)
scaffold0015 (245-287)||(38481-38523)
[»] scaffold0051 (1 HSPs)
scaffold0051 (259-323)||(53652-53716)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 39 - 385
Target Start/End: Original strand, 52204120 - 52204467
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  52204120 acaataagtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgt 52204219  T
Q  139 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52204220 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctataagtatcagataa 52204319  T
Q  239 aaaagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52204320 aaaagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcgagtatccatgaagtatcggtattcgatacgggtacgtttccattt 52204419  T
Q  339 tgcagtattcggacttca-taggtatcagcctaagagtaagagagaga 385  Q
    |  ||||||| | ||||| ||||||| |||||||||||||||||||||    
T  52204420 taaagtattcaggcttcattaggtattagcctaagagtaagagagaga 52204467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 44 - 290
Target Start/End: Original strand, 27164028 - 27164274
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||| ||||||| ||||||||||||| |||| || |||| ||||||||||||||| || ||||||| |||||| ||||| |||||| |||||||||    
T  27164028 aagtataaatttaagtggttcatcgagaaataattatattgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcac 27164127  T
Q  144 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaag 243  Q
    ||| || ||||||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||| ||| | ||| ||||||||||||| |     
T  27164128 ttt-tttcccttcatcttttctaggatacgtatatgtgaagtatcttataagtatccttg-tgtatctatggagtatccaataagtatcagataaaatat 27164225  T
Q  244 a--ttaaaatttaaaataattaattatgatacttcgtgggtacgtatcc 290  Q
    |  |||||| |  ||||||||||||  ||||||| ||  ||||||||||    
T  27164226 attttaaaaatgtaaataattaattccgatactttgtaagtacgtatcc 27164274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 328
Target Start/End: Original strand, 52695580 - 52695849
Alignment:
Q  61 gttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatca 160  Q
    ||||||| ||||| |||| || |||| |||||||||||||||  | || |||| |||||  ||||||||||| ||||||||||||| | ||||||||||     
T  52695580 gttcatcaagaaataattctaatgatgcatatctaaaattgaaccatacacatctctacggaatttttacaaaattgtctcactttttgacccttcatct 52695679  T
Q  161 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa---gattaaaatttaaaa 257  Q
    ||| ||||||| |||| |||||||||||||||||| ||| ||| ||||| |||| | ||| ||| | |||||  |||||| |     |||||| ||||||    
T  52695680 tttataggataagtatctgtgaaatatcttataagcatctttg-tgtatttgtgaagtatcctacatgtatccaataaaatatttttttaaaaattaaaa 52695778  T
Q  258 taattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtac 328  Q
    ||||||||| ||||||||||||||||||| |||   ||||||| || ||||||||||| ||||||||||||    
T  52695779 taattaattctgatacttcgtgggtacgtttccaagagtatccgtggagtatcggtatccgatacgggtac 52695849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 46979347 - 46979669
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||||   |||||||| || | ||  |||||||||||||| || ||||||| | || | |||||||||||| ||||    
T  46979347 acaagaagtataattttaagtgattcatcagtaaacaattctattaatgtatatctaaaattgaatcttatacatctataatgaatttttacaacgttgt 46979446  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| |||||||  |||||||||||||||| | |||| ||| ||| ||||||||||||| ||    |||| |||   ||| ||||| ||||    
T  46979447 ctcacttttttactcttcatctttttctaggatacgtatctttgaagtattttagaagtatccttgtt-tacacatggagtatcaaataagtatccgata 46979545  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||| |   ||||||| ||||||||||||||| |||||||| |||||||| |||  || |||| || || ||||||||||| |||||||||||||| ||||    
T  46979546 aaatatttattaaaaattaaaataattaattctgatactttgtgggtacatatttgcgagtacccgtggagtatcggtatccgatacgggtacgtctcca 46979645  T
Q  336 ttttgcagtattcggacttcatag 359  Q
    ||||| ||||| ||  ||||||||    
T  46979646 ttttggagtatccgagcttcatag 46979669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 52203965 - 52204057
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 141  Q
    |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52203965 taattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctc 52204057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 40614935 - 40614775
Alignment:
Q  53 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 152  Q
    ||||||| |||||||||||||||| | || ||||  ||||||||||||||  | ||||||| |||| | ||||||||||| ||||||||||||| |||||    
T  40614935 tttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacc 40614836  T
Q  153 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtg 214  Q
     |||||| |||||| ||||||||| | |||| ||||||||||||||| ||| ||||||||||    
T  40614835 tttcatcttttctaagatacgtatctatgaagtatcttataagtatctttg-tgtatctgtg 40614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 20369265 - 20369415
Alignment:
Q  62 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcat 161  Q
    ||||||||||||||||| || |||| || |||||||||||| || ||||||| || | | |||||| |||||||||| ||||||| |||||||| ||| |    
T  20369265 ttcatcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacccttaatctt 20369363  T
Q  162 ttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtg 214  Q
    ||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  20369364 ttcaaggatatgtatatgtgaaatatcttataagtatccttg-tgtatctgtg 20369415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 300
Target Start/End: Original strand, 7629191 - 7629452
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | |  | |||||||||||||||||    
T  7629191 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctattatgaatttttacaacattgt 7629290  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    ||||  || ||||  | ||||  ||||||||||| |  | |||||| ||||||| ||||||||||| ||||| |||||| |||   | | ||||| ||||    
T  7629291 ctca--tttttactgtgcatctttttctaggatatgcttctgtgaagtatcttagaagtatccttg-tgtatatgtggagtatcacacaagtatccgata 7629387  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatcc 300  Q
    ||| |   ||||||| ||||||||||||||| ||||||||||||| |||||||| || |||||||    
T  7629388 aaatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatctgcgagtatcc 7629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 38489726 - 38489887
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||| || ||||||| |||||| ||| ||||||||||| | ||||    
T  38489726 aagtataattttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcac 38489825  T
Q  144 tttcttacccttcatcatttctaggatacg--tatttgtgaaatatcttataagtatccttgt 204  Q
    ||| ||||  |||||  ||| |||||||||  ||| |||||||||||||||||||||| ||||    
T  38489826 ttttttactattcat-ttttttaggatacgtatatgtgtgaaatatcttataagtatcattgt 38489887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 20179038 - 20179174
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||| || ||||||  ||| || ||||| ||||||||||||||||||| |    
T  20179038 taattttaagtggttcatcaagaaacaattcaactgatacatatctaaaattgaatcatataca--tctcctgaatttctacaacattgtctcacttt-t 20179134  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatc 188  Q
    | ||||||||| |||||||||||||| | |||||| ||||    
T  20179135 tccccttcatcttttctaggatacgtttctgtgaagtatc 20179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 29324199 - 29324043
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| |  ||||||| | || | || ||||||||||||| |||||||| |    
T  29324199 taattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcacttttt 29324100  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| |||||||  ||| ||||||||||||||||||| |||  || ||||||| ||||    
T  29324099 tactcttcatctttttttaggatacgtatttgtgaagtatagtagaagtatcattgt 29324043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 227
Target Start/End: Complemental strand, 20619379 - 20619202
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||| ||||| ||| |||| |||| || ||||||||||||||| || |||||||||| ||| |||||| |||||||||| | ||||| |    
T  20619379 taattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaacattgtttgacttttt 20619280  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatac 227  Q
    ||||||  ||  ||||||| |||| ||| | |||| |||||||||| |||||||| ||||||| |||| ||| ||||||    
T  20619279 taccctatatattttctagaatacatatatttgaagtatcttataaatatccttg-tgtatctatggagtatcctatac 20619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 117 - 330
Target Start/End: Original strand, 51241338 - 51241541
Alignment:
Q  117 tactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 216  Q
    |||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||   |||||| ||||||||||||||| ||| ||||||||||||    
T  51241338 tactgaatttttacaacattgtctcacttttttacccatcatcttttctaggatacgttaatgtgaagtatcttataagtatctttg-tgtatctgtgga 51241436  T
Q  217 atattctatacgtatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggta 314  Q
               ||||  ||||||| |    |||||| ||||||||||||||| | ||||||| | ||||| ||||||| ||||||  |||||||||| ||    
T  51241437 -----------gtatttgataaaatattttttaaaaattaaaataattaattctcatacttcataggtacatatccgcgagtatcagtgaagtatcgata 51241525  T
Q  315 ttcgatacgggtacgt 330  Q
    ||||||||||| ||||    
T  51241526 ttcgatacgggcacgt 51241541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 45472727 - 45472607
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||| ||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| |||| | ||| |||||||||||||    
T  45472727 acaagaagtataattttacgtgattcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgt 45472628  T
Q  139 ctcactttcttacccttcatc 159  Q
    || ||||| |||| |||||||    
T  45472627 ctaacttttttactcttcatc 45472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 32835366 - 32835245
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattg--attcgtatacatttctactaaatttttacaacatt 136  Q
    ||||||||| ||||||||||| |||||| ||| ||||||| || | || ||||||||||||||  | || ||||||| || ||| |||||||||||||||    
T  32835366 acaataagtataattttaagtggttcattgagcaacaattctattaatgcatatctaaaattgaaaatcatatacatctcaactgaatttttacaacatt 32835267  T
Q  137 gtctcactttcttacccttcatc 159  Q
    |||||||||| ||||||||||||    
T  32835266 gtctcacttt-ttacccttcatc 32835245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 35296536 - 35296386
Alignment:
Q  53 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 152  Q
    |||||||  ||||||||||||||||| |||| || ||||||||||||||| ||||||| || |||||| |||||   | | ||||||||||||| ||||     
T  35296536 tttaagtgattcatcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt---ctatattgtctcacttttttaca 35296440  T
Q  153 cttcatcatttctaggatac--gtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||| |||||| |||||  |||| |  ||| ||||||||||||||| ||||    
T  35296439 cttcatcttttctatgatacatgtatctaggaagtatcttataagtatcattgt 35296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 359
Target Start/End: Complemental strand, 43471777 - 43471583
Alignment:
Q  166 aggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat--taaaatttaaaataatta 263  Q
    ||||||||| | | |||| |||||||||||||||  ||| |||||||| || |||  |||| ||||| ||||||| | ||  | ||| ||||||||||||    
T  43471777 aggatacgtctctatgaagtatcttataagtatctgtgt-gtatctgtcgagtatcttataagtatccgataaaatatatatttaaaattaaaataatta 43471679  T
Q  264 attatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcggacttcatag 359  Q
    ||| ||||||| |||||||||||||| |  ||||||||   ||||||||||| |||||||| || || ||||||||| ||||| |||  |||||||    
T  43471678 attctgatactccgtgggtacgtatctgagagtatccactgagtatcggtatccgatacggatatgtctccattttggagtatccgggattcatag 43471583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 358
Target Start/End: Original strand, 39615142 - 39615352
Alignment:
Q  148 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat-t 246  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||| |||||||||||| |||  || | ||||   ||||||    | |    
T  39615142 ttacccttcatcttttctaagatacgtatttgtgaagtatcttataagtatcattg-tgtatctgtggagtatcttacaagtattccataaaatgtttat 39615240  T
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtat 346  Q
    |||| |||||||||||||||   |||||| |||||| |||||| || | ||||| | || |||||||||  |||||| |||| | | ||||||| |||||    
T  39615241 aaaaattaaaataattaattcaaatactttgtgggtgcgtatctgcgaatatccgtaaaatatcggtatctgatacgagtacatcttcattttggagtat 39615340  T
Q  347 tcggacttcata 358  Q
     || ||||||||    
T  39615341 ccgaacttcata 39615352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 36504937 - 36504805
Alignment:
Q  50 aattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctt 149  Q
    |||||||| | |||||||||||||||||| || |||| |||||||||||||||  | |||||| | ||||| || | |||||||||||||||||||  ||    
T  36504937 aattttaattggttcatcgagaaacaattctagtgatgcatatctaaaattgaaccatataca-tcctactgaa-tgttacaacattgtctcacttgttt 36504840  T
Q  150 acccttcatc-atttctaggatacgtatttgtgaa 183  Q
    || |||||||  |||||||||||||||| ||||||    
T  36504839 actcttcatctttttctaggatacgtatctgtgaa 36504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 36172147 - 36172218
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||||||||||||| ||||||| ||||||||||||||||  |||||||| | ||||||||||| |||||||    
T  36172147 ttaaaataattaattctgatactccgtgggtacgtatccgagagtatccacggagtatcggtatccgatacg 36172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 1341681 - 1341829
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 151  Q
    |||||| ||||| ||||| |||||||| || |||||||||||| ||| ||| || ||| ||| |||| | |||||| ||||||   | | ||||| ||||    
T  1341681 ttttaattagttaatcgaaaaacaattataatgattcatatcttaaaatgaatcatatgcatctctattgaattttcacaacacaatataacttttttac 1341780  T
Q  152 ccttcatcatttct--aggatacgtatttgtgaaatatcttataagtat 198  Q
    |||||||  |||||  | ||||||| |||||||| |||| |||||||||    
T  1341781 ccttcattttttctccaagatacgtctttgtgaagtatcatataagtat 1341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 345
Target Start/End: Complemental strand, 36504753 - 36504653
Alignment:
Q  245 ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagt 344  Q
    |||||| || |||||||||||| |||||||||||||||   |||| || ||||||  |  ||||||| |||| ||||||||||||| ||| ||||| |||    
T  36504753 ttaaaaatttaaataattaattttgatacttcgtgggtgaatatctgcgagtatctgttgagtatcgatatttgatacgggtacgtctccgttttggagt 36504654  T
Q  345 a 345  Q
    |    
T  36504653 a 36504653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 24120976 - 24120913
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    |||||||||||||||  ||||||  |||||||||||||||| ||||||| || |||||| ||||    
T  24120976 ttaaaataattaatttcgatactctgtgggtacgtatccgcgagtatccgtggagtatcagtat 24120913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 323
Target Start/End: Complemental strand, 45472539 - 45472455
Alignment:
Q  237 aaaaaagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    |||||| ||||||||||||| |||||||||   ||||||||||| | |||||| || ||||||| || ||||||||||| |||||||    
T  45472539 aaaaaaaattaaaatttaaa-taattaatttcaatacttcgtggatgcgtatc-gcgagtatccgtggagtatcggtatccgatacg 45472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 12176695 - 12176743
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatcc 300  Q
    |||||||||||||||  |||||| ||||||||||||||||  |||||||    
T  12176695 ttaaaataattaattccgatactccgtgggtacgtatccgagagtatcc 12176743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 16343080 - 16343032
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatcc 300  Q
    |||||| ||||||||||||||||  |||||||||||||||  |||||||    
T  16343080 ttaaaagaattaattatgatactctgtgggtacgtatccgagagtatcc 16343032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 45648218 - 45648540
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||||| |||||||||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  45648218 acaagaagtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgt 45648317  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| | |||||  |||||||||||||||| |||||| ||||||| ||||||||||  |||||||||||| |||   ||| ||| | ||||    
T  45648318 ctcacttttttactcctcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt-atgtatctgtggagtatcacataagtacccgata 45648416  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||| |   ||||||| |||||||||||||||  |||||||||||||||||||||||| ||||||| || ||| || |||| |||||||||||||| ||||    
T  45648417 aaatatttattaaaaattaaaataattaattccgatacttcgtgggtacgtatccgcgagtatccgtggagtttcagtatccgatacgggtacgtctcca 45648516  T
Q  336 ttttgcagtattcggacttcatag 359  Q
    ||||| ||||||||| ||||||||    
T  45648517 ttttggagtattcgggcttcatag 45648540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 39 - 359
Target Start/End: Original strand, 47843761 - 47844083
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| |||| ||  |||||||||||| |||| ||||||||||||||| || ||||||| |||||| | |||||||||||||||    
T  47843761 acaagaagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgt 47843860  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    || ||||| ||||||||||||  ||||||||||||| ||  ||||| ||||||| ||||||||||| | |||||| ||| |||  |||| ||||| ||||    
T  47843861 ctaacttttttacccttcatctttttctaggatacgcatacgtgaagtatcttagaagtatccttg-tctatctgcggagtatcatataagtatccgata 47843959  T
Q  238 aaaaagatt--aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||| |  ||  |||| | |||||||||||||  |||||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||| ||      
T  47843960 aaatatttttaaaaaatcaaaataattaattgagatacttcgtgggtacgtatccgcgagtatccgtggagtatcggtatccgatacgggtacgtctctg 47844059  T
Q  336 ttttgcagtattcggacttcatag 359  Q
    ||||| ||||| ||| ||||||||    
T  47844060 ttttgtagtatccgggcttcatag 47844083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 39 - 315
Target Start/End: Original strand, 42040451 - 42040730
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  |||||||||| |||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  42040451 acaagaagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 42040550  T
Q  139 ctcac-tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagat 236  Q
    ||||| ||| |||| |||||||  ||||||| |||||| | || ||| ||||||| ||||||||||| ||||||||| || ||| | ||| ||||| |||    
T  42040551 ctcactttttttactcttcatctttttctagaatacgtgtctgcgaagtatcttagaagtatccttg-tgtatctgtagagtatcccataagtatccgat 42040649  T
Q  237 aaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    |||| |   ||||||| |||||||||  |||||||||||||||||  ||||||||| ||||||||| || |||||||||||    
T  42040650 aaaatatttattaaaaattaaaataaccaattatgatacttcgtgaatacgtatccacaagtatccgtggagtatcggtat 42040730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 315
Target Start/End: Complemental strand, 48153159 - 48152880
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||| |||| |||||||||||||||||| || |||| ||| ||||||||||| |||||||||| |||||  ||| ||||||||||| |    
T  48153159 acaagaagtataatttcaagtggttcatcgagaaacaattctagtgatgcatgtctaaaattgaatcgtatacatctctacggaatgtttacaacatttt 48153060  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||  |||||||  |||||||||||||||| |||||||||||||||||||||||||| ||||||||  || |||  |||| ||||| | |     
T  48153059 ctcacttttttattcttcatctttttctaggatacgtatatgtgaaatatcttataagtatccttg-tgtatctgcagagtatcgtataagtatccgttt 48152961  T
Q  238 aaa---aagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    |||       |||||| || |||||||||||| ||||||||||||||| ||| ||||| ||||||| || |||||| ||||    
T  48152960 aaatgtttttttaaaaatttaaataattaattctgatacttcgtgggtgcgtgtccgcgagtatccgtggagtatcagtat 48152880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 346
Target Start/End: Original strand, 3751481 - 3751799
Alignment:
Q  31 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 129  Q
    |||||||| |||| |||| |||||||||||  |||||||||||||||||||| |||| ||||||||||||||| || ||||||| |||||||| |||| |    
T  3751481 ccttcattcacaagaagtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttca 3751580  T
Q  130 caacattgtctcac-tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacg 228  Q
    |||||||||||||| ||| ||||||| |||| ||| || |||| |||| |||||| ||||||| ||||||  ||| ||||||| || | ||   |||| |    
T  3751581 caacattgtctcactttttttaccctgcatcttttttaagatatgtatatgtgaagtatcttaaaagtatttttg-tgtatctctgcagtaacatataag 3751679  T
Q  229 tatcagataaa--aaagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggt 326  Q
    |||| ||||||  ||   |||| | || |||||||||| |  ||||| |||||||||||||||| | | ||||| || ||||||| ||| ||||||||||    
T  3751680 tatctgataaaataatttttaacaattgaaataattaactccgatacgtcgtgggtacgtatccacgaatatccgtggagtatcgatatccgatacgggt 3751779  T
Q  327 acgtttccattttgcagtat 346  Q
    |||| ||| ||||| |||||    
T  3751780 acgtctccgttttggagtat 3751799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 53 - 284
Target Start/End: Complemental strand, 34471874 - 34471642
Alignment:
Q  53 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 152  Q
    ||||||| | ||||| ||||||| || ||  ||| ||||||||||||||| |  ||||||| |||||| ||||| ||||||||||| ||||||| ||||     
T  34471874 tttaagtggctcatcaagaaacagttctagagatgcatatctaaaattgaattatatacatctctactgaatttctacaacattgtgtcacttttttaca 34471775  T
Q  153 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaa 250  Q
    ||||||  || ||||||||||||| |||||| |||||||||||||| |||| ||||||| || | ||| ||||| ||||||||||||| |    || |||    
T  34471774 cttcatatttcctaggatacgtatatgtgaagtatcttataagtattcttg-tgtatctatgaagtatcctataagtatcagataaaatatttttttaaa 34471676  T
Q  251 tttaaaataattaattatgatacttcgtgggtac 284  Q
     ||||||||||||||| |||||||||||||||||    
T  34471675 attaaaataattaattctgatacttcgtgggtac 34471642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 40836511 - 40836356
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| || |||| || ||||||| || |||||||| |||||||||    
T  40836511 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatagatctctactagatgtttacaacgttgtctcac 40836412  T
Q  144 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    ||| |||| | |||||  |||||| ||||||||| |||||| || |||||||||||    
T  40836411 ttttttactcctcatctttttctatgatacgtatctgtgaagtaccttataagtat 40836356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 43495758 - 43495908
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||| || ||||||  || ||||||| ||||||||||||| |    
T  43495758 taattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctctactggatgtttacaagattgtctcacttttt 43495857  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    ||| ||||| |  ||| |||||||| ||| |||||| ||||||||||||||    
T  43495858 tactcttcacctttttataggatacatatctgtgaagtatcttataagtat 43495908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 39 - 346
Target Start/End: Complemental strand, 45492290 - 45491977
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||  | |||||||||  ||| || ||||||||||||||| || ||||| | ||| || |||||||||||||||||    
T  45492290 acaagaagtataattttaagtgattcactgtgaaacaattcgactaatgcatatctaaaattgaatcatatacgtctctcctgaatttttacaacattgt 45492191  T
Q  139 ctcactttctta----cccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatca 233  Q
    |||||||| |||    |||||||||  |||||||||||| ||| || ||| ||||||||||||||| ||| |||| || |||| |||  |||| |||||     
T  45492190 ctcacttttttaatttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattg-tgtacctatggagtatcatataagtatcc 45492092  T
Q  234 gataaaaaaga--ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtt 331  Q
    ||||| | | |  ||  || |||||||||||||||  |||||||| || ||| |||||||| | ||||| || ||||| ||||| ||||||||||||||     
T  45492091 gataatatatattttttaaattaaaataattaattccgatacttcatgagtatgtatccgcgaatatccgtggagtattggtatccgatacgggtacgtc 45491992  T
Q  332 tccattttgcagtat 346  Q
    ||| ||||| |||||    
T  45491991 tccgttttgaagtat 45491977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 2185763 - 2185986
Alignment:
Q  70 gaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-atttctagg 168  Q
    ||||||||| |||| || ||||||||||||||| || |||| || ||| || ||||||||||||||||||||  ||| ||||| || |||  ||||||||    
T  2185763 gaaacaattctactaatgcatatctaaaattgaatcatatatatctctccttaatttttacaacattgtctcgtttttttaccttttatctttttctagg 2185862  T
Q  169 atacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaataattaatt 266  Q
    |||| ||| |||||| ||||||||||||||||||| ||||| | |||| |||  |||| ||||| ||||| | |    |||||| ||||| |||||||||    
T  2185863 atacatatatgtgaagtatcttataagtatccttg-tgtatatatggagtatcatataagtatccgataatatattttttaaaaattaaattaattaatt 2185961  T
Q  267 atgatacttcgtgggtacgtatccg 291  Q
     ||||||||| || |||| ||||||    
T  2185962 ctgatacttcatgagtacatatccg 2185986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 198
Target Start/End: Complemental strand, 22201217 - 22201069
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||| |||||||||||||| ||| ||| || |||||||||| |  | ||||||| || ||| |||||||| |||||||||||| ||| |    
T  22201217 taattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttt 22201119  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    |||| |||||| |||||| ||||||||  |||||| ||||||||||||||    
T  22201118 taccattcatcttttctatgatacgtacctgtgaagtatcttataagtat 22201069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 22236604 - 22236752
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||| |||||||||||||| ||| ||| || |||||||||| |  | ||||||| || ||| |||||||| |||||||||||| ||| |    
T  22236604 taattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttt 22236702  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    |||| |||||| |||||| ||||||||  |||||| ||||||||||||||    
T  22236703 taccattcatcttttctatgatacgtacctgtgaagtatcttataagtat 22236752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 340
Target Start/End: Original strand, 31397217 - 31397488
Alignment:
Q  71 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctagga 169  Q
    |||||||| || ||||| |||||| ||||||| || |||| ||||| | | |||||| ||||||  |||||||||| ||||| ||| |  ||| | ||||    
T  31397217 aaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacacagtctcacttttttacctttcgtttttttccagga 31397316  T
Q  170 tacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat--taaaatttaaaataattaatta 267  Q
    ||||||| ||||||| ||||||||||||||  ||| |||  ||| ||||||  |||| ||||| ||||||| | ||  |  || |||||||||||||||     
T  31397317 tacgtatgtgtgaaacatcttataagtatctgtgt-gtacatgtcgaatatcttataagtatccgataaaatatatattttaaattaaaataattaattc 31397415  T
Q  268 tgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttg 340  Q
     |||||| |||| |||| ||| ||| ||||||| ||||||||| |||| |||||| ||||||| |||||||||    
T  31397416 cgatactccgtgtgtacctattcgcgagtatccgtgaagtatcagtatccgatacaggtacgtctccattttg 31397488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 360
Target Start/End: Complemental strand, 45804852 - 45804739
Alignment:
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtat 346  Q
    |||| |||||||||||||||  |||||||||||  ||||||||| | | ||||| ||||||||||||||  ||||||||||||| ||| ||||  |||||    
T  45804852 aaaaattaaaataattaattccgatacttcgtgaatacgtatcctcgaatatccgtgaagtatcggtatctgatacgggtacgtctccgttttagagtat 45804753  T
Q  347 tcggacttcatagg 360  Q
    | || |||||||||    
T  45804752 ttgggcttcatagg 45804739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 339
Target Start/End: Complemental strand, 48138601 - 48138325
Alignment:
Q  65 atcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt- 163  Q
    ||||| ||| |||| || |||||||||||| ||||||| || ||||||| || | |||||||| | ||||  |||||| ||  |||  ||||||  |||     
T  48138601 atcgaaaaataattatagtgattcatatcttaaattgaatcatatacatctccattaaattttcagaacacagtctcatttatttaagcttcattttttt 48138502  T
Q  164 ctaggatacgtatttgtgaaatatcttataagtatccttgt-tgtatctgtggaatattctatacgtatcagataaaaaagat--taaaatttaaaataa 260  Q
    | ||||||||| | |||||| ||||||||||||||  |||| ||||||||| || |||  |||| ||||| ||||||| | ||  |  || |||||||||    
T  48138501 ccaggatacgtctctgtgaagtatcttataagtat--ttgtgtgtatctgtcgagtatcttataagtatccgataaaatatatattttaaattaaaataa 48138404  T
Q  261 ttaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccatttt 339  Q
    ||||||  |||| ||||| ||||||||||||  ||||||| || | ||||| ||| |||||||||| ||| ||||||||    
T  48138403 ttaattccgatatttcgtaggtacgtatccgagagtatccgtggattatcgatatccgatacgggtgcgtctccatttt 48138325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 24699756 - 24699651
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcgga 351  Q
    |||||||||||||||  |||||| ||||| ||||||||||  |||||||  | |||||| |||| |||||| | ||||| ||||||||| ||||| ||||    
T  24699756 ttaaaataattaattccgatactccgtggatacgtatccgagagtatccgcggagtatcagtatccgatacagatacgtctccattttggagtatccgga 24699657  T
Q  352 cttcat 357  Q
    ||||||    
T  24699656 cttcat 24699651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 311
Target Start/End: Original strand, 25482695 - 25482883
Alignment:
Q  123 atttttacaacattgtctcactttcttacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatatt 221  Q
    |||||||||||||||||||||||| |||   ||||| | ||||||  ||||||||||||||| ||||||| |||||||  || ||||| |||||| |||     
T  25482695 atttttacaacattgtctcacttttttaattttcatccttttctaaaatacgtatttgtgaagtatcttagaagtatc--tg-tgtatatgtggagtatc 25482791  T
Q  222 ctatacgtatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcg 311  Q
      |||  |||| ||||||| |   ||||||| ||||||||||||||| | ||| |||||  |||||||||| |  ||||| |||||||||||    
T  25482792 acataaatatccgataaaatatttattaaaaattaaaataattaatttttatatttcgtatgtacgtatccacgtgtatcgatgaagtatcg 25482883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 42509269 - 42509175
Alignment:
Q  75 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggata 171  Q
    |||| |||| || ||| ||||||||||| |  |||| |||| |||| ||||||||||||||||||||||||| |||||| ||||| | |||||||||    
T  42509269 aattctactaatgcatgtctaaaattgaat--tatatatttttactgaatttttacaacattgtctcacttttttacccatcatcttgtctaggata 42509175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 44798409 - 44798448
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  44798409 ttaaaataattaattatgatacttcatgggtacgtatccg 44798448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 7858014 - 7857940
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacat 113  Q
    ||||||| | || |||||||| |||||  ||||||||||| ||||| ||||||||||||||||| || |||||||    
T  7858014 acaataaatatatttttaagtggttcaatgagaaacaattctactgtttcatatctaaaattgaatcatatacat 7857940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 25310999 - 25311080
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctact 120  Q
    |||| |||| ||||||||||| ||||||| |||||||||| ||||| | ||||| ||||||| | || ||||||| ||||||    
T  25310999 acaagaagtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctctact 25311080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 9229554 - 9229593
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  9229554 ttaaaataattaattctgatactccgtgggtacgtatccg 9229593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 2483680 - 2483638
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaa 294  Q
    |||||||||||||||||||||||  ||||||||||||| ||||    
T  2483680 ttaaaataattaattatgatactctgtgggtacgtatctgcaa 2483638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Original strand, 25482611 - 25482672
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacat 113  Q
    ||||||||  |||||||| |||||||| || |||| ||||||||||||||| || |||||||    
T  25482611 ttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattgaatcatatacat 25482672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 36467325 - 36467052
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||    
T  36467325 taattttaagtggttcatcgagaaacaattttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcactttct 36467226  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa-aagatta 247  Q
    ||||| ||||||| |||||  ||| ||| |||||| ||||||||||||||| ||| |||||||||||| ||| ||||| ||||||||||||| |   ||     
T  36467225 tacccgtcatcatctctagtttacatatctgtgaagtatcttataagtatctttg-tgtatctgtggattatcctataagtatcagataaaatatttttt 36467127  T
Q  248 aaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
     || |||||||||||||||  ||||||||||| |||||||| | ||||||||  || ||||||||||| ||||||    
T  36467126 taaattaaaataattaattccgatacttcgtgagtacgtattcacaagtatctgtggagtatcggtatccgatac 36467052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 39 - 346
Target Start/End: Complemental strand, 7017963 - 7017652
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||| |||||||||||||| |||  || ||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  7017963 acaagaagtataattttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgt 7017864  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgt---ggaatattctatacgtatcag 234  Q
    |||||||| ||||||||||||  ||||||||| || ||| |||||| |||||||||| |||| ||| ||||| |||   ||| |||  |||| ||||| |    
T  7017863 ctcacttttttacccttcatctttttctaggaaacatatatgtgaagtatcttataaatatctttg-tgtatttgtggaggagtatcatataagtatccg 7017765  T
Q  235 ataaaaaa---gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtt 331  Q
    |||||| |     ||||||||| ||||||||||||  |||| ||||||||||||||||||| ||||||| |||||| || |||| ||||||||||||||     
T  7017764 ataaaatatttttttaaaattt-aaataattaattccgata-ttcgtgggtacgtatccgcgagtatccgtgaagtgtcagtatccgatacgggtacgtc 7017667  T
Q  332 tccattttgcagtat 346  Q
    ||| ||||| |||||    
T  7017666 tccgttttgaagtat 7017652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 38 - 315
Target Start/End: Original strand, 11562719 - 11562993
Alignment:
Q  38 tacaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 137  Q
    ||||| |||| ||||||||||| ||| |||||||||||||| |  ||||||||||| |||||||| || |||| || |||||| ||||| ||||||||||    
T  11562719 tacaagaagtataattttaagtggtttatcgagaaacaattgt--tgattcatatccaaaattgaatcatatatatctctactgaatttctacaacattg 11562816  T
Q  138 tctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    ||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||||||||  ||| ||||| |  ||  || || ||| ||||||||||    
T  11562817 tctcacttttttacccttcatcttttctcgaatacgtatttgtgaagtatcttataagtatttttg-tgtatttacggggta-tccataagtatcagata 11562914  T
Q  238 aaaaagatt--aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||| |  ||  |||| ||||||| ||||| |  | |||||||||| ||||||||||| ||||||| ||||||||||||||    
T  11562915 aaatatttttaaaaaattaaaattattaa-tccggtacttcgtggatacgtatccgcgagtatccgtgaagtatcggtat 11562993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 49 - 289
Target Start/End: Complemental strand, 35298554 - 35298312
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||||||||| |||| || |||| ||| ||||||||||| |  ||||||| |||||| ||||||||||||||||||||||||| |    
T  35298554 taattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcacttttt 35298455  T
Q  149 tacccttcatc--atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaa-aaagat 245  Q
    |||| || |||   ||||||| |||||||| |||||| |||||||||| |||| ||| |||||||||||| |||  |||| ||||| || ||| ||   |    
T  35298454 taccttttatcttttttctagaatacgtatatgtgaagtatcttataaatatctttg-tgtatctgtggagtatcatataagtatccgaaaaataattct 35298356  T
Q  246 taaaatttaaaataattaattatgatacttcgtgggtacgtatc 289  Q
    |  || ||||||||||||||| ||||||||||||||||||||||    
T  35298355 tttaaattaaaataattaattctgatacttcgtgggtacgtatc 35298312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 41324017 - 41323867
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  41324017 acaagaagtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgt 41323918  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatc 188  Q
    |||||||| ||||| ||||||  |||||||||||| ||| |||||| ||||    
T  41323917 ctcacttttttaccgttcatctttttctaggatacatatatgtgaagtatc 41323867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 315
Target Start/End: Original strand, 38221608 - 38221886
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  |||||| |||||||||| || |||| |||||| |||||||| || ||||||| |||| | ||| |||||||||||||    
T  38221608 acaagaagtataattttaagtgattcatcaagaaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaacattgt 38221707  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||| | |||| |||||||  |||||||||||| ||| |||||| |||||| ||| |||||||| |||||||| | | |||  |||| ||||  | ||    
T  38221708 ctcactcttttactcttcatctttttctaggatacatatatgtgaagtatcttgtaaatatccttg-tgtatctgcgaagtatcgtataagtattcgtta 38221806  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||| |    |||||| || ||||||||||||  |||||||||||||| ||||||||| ||||||| || |||||||||||    
T  38221807 aaatattttttaaaaatttaaataattaattccgatacttcgtgggtgcgtatccgcgagtatccgtggagtatcggtat 38221886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 42794768 - 42794930
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    ||||||||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| ||  |||||| | || | |||||||||||||||||    
T  42794768 acaataagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgt 42794867  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatcc 200  Q
    |||||||| |||| |||||||  |||||||||||||| |||||||| ||||  ||||||||||    
T  42794868 ctcacttttttactcttcatctttttctaggatacgtgtttgtgaagtatcccataagtatcc 42794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 44 - 213
Target Start/End: Original strand, 37272909 - 37273078
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| ||||||||| ||||||||||| |||| ||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||    
T  37272909 aagtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttac 37273008  T
Q  144 tttcttacccttcatcatt-tctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgt 213  Q
    ||| ||||| |||||| || | |||  ||| ||| |||||||||||||| ||||||| ||| |||||||||    
T  37273009 ttttttacctttcatctttgtttagattacatatatgtgaaatatcttacaagtatcattg-tgtatctgt 37273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 30485719 - 30485559
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||| ||||||| ||||| |||||||||||| || |||| |||||||||||||||  |  | |||| |||||| |||||||| | |||| |    
T  30485719 acaagaagtataaatttaagtggttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctctactgaatttttagagcattat 30485620  T
Q  139 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 199  Q
    |||||||| ||||| |||||| ||||||| |||| ||||||||||||||||||||||||||    
T  30485619 ctcacttttttacctttcatcttttctagaatacatatttgtgaaatatcttataagtatc 30485559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 16496802 - 16496955
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac-tttctta 150  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||| |  | | |||||| ||||||||||| ||| ||| |||    
T  16496802 ttttaagtggttcatcgagaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcacaacattgtcccacttttttta 16496901  T
Q  151 cccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    | ||| ||| |||||||||||| ||| ||| || |||||||| |||||||||||    
T  16496902 ctctttatcttttctaggatacatatatgttaagtatcttattagtatccttgt 16496955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 39 - 238
Target Start/End: Complemental strand, 17328835 - 17328636
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||| ||||||| ||||  || |||||||||  ||| || ||||||||||||||| || ||||||| ||| || |||||||||||| ||||    
T  17328835 acaagaagtataactttaagtggttccccgtgaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaatttttacaaccttgt 17328736  T
Q  139 ctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    ||||||||  ||| ||||||| ||| ||||||||| ||| |||||| ||||||||||||||| ||| ||||||| |||| |||  |||| ||||| ||||    
T  17328735 ctcacttttctacgcttcatcttttcctaggatacatatatgtgaagtatcttataagtatcattg-tgtatctatggagtatcatataagtatccgata 17328637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 96 - 320
Target Start/End: Complemental strand, 40498652 - 40498426
Alignment:
Q  96 aaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataa 194  Q
    ||||||| |||||||||| |||||| ||| |||||||||||||||||||||  ||| ||||||| ||| ||||||||||||| | |||| ||||||||||    
T  40498652 aaattgaatcgtatacatctctactgaatgtttacaacattgtctcacttttatactcttcatcttttcctaggatacgtatatatgaagtatcttataa 40498553  T
Q  195 gtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgc 292  Q
     |||||||| |||||||  ||| |||  |||| ||||| | ||||| |    |||||| || |||||||||| |  |||||||||||||| ||||||| |    
T  40498552 atatccttg-tgtatctacggagtatcttataagtatccgttaaaatattttttaaaaatttaaataattaagttcgatacttcgtgggtgcgtatccac 40498454  T
Q  293 aagtatccatgaagtatcggtattcgat 320  Q
     ||||||  || ||||||||||| ||||    
T  40498453 gagtatctgtggagtatcggtatccgat 40498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 2789001 - 2788872
Alignment:
Q  69 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 168  Q
    ||||||||||||||| || ||||| ||||||||| |  |||||||||| | |||| ||| |||| ||||||||||||| ||| | |||||| |||||| |    
T  2789001 agaaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcacttttttaacattcatcttttctatg 2788902  T
Q  169 atacgtatttgtgaaatatcttataagtat 198  Q
    ||| |||| |||||| |||| |||||||||    
T  2788901 atatgtatgtgtgaagtatcatataagtat 2788872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 3353228 - 3353078
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 151  Q
    |||||| | ||| ||||| |||||||| || |||||||||||| ||||||| || |||||||||| | |||||||| ||||||| |||||||||| | ||    
T  3353228 ttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatagtctcactttttgac 3353129  T
Q  152 ccttcatcatttct----aggatacgtatttgtgaaatatcttataagtat 198  Q
     ||||||  ||| |    | ||||||| |||||||||||||||||||||||    
T  3353128 tcttcatttttttttttcaagatacgtctttgtgaaatatcttataagtat 3353078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 346
Target Start/End: Complemental strand, 38140690 - 38140401
Alignment:
Q  62 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatt----tctactaaatttttacaacattgtctcactttcttacccttca 157  Q
    ||||||||||| ||||| || |||| ||||||||||||||| || |||||||     | || | |||| ||||||||||||||||| || |||| |||||    
T  38140690 ttcatcgagaa-caattatattgatgcatatctaaaattgaatcatatacatcaatctataatgaattcttacaacattgtctcacatttttactcttca 38140592  T
Q  158 tcatttc-taggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaattta 254  Q
    || |||| |||||||||||| |||||| ||||||  || |||| ||| ||||| |||||| |||   |||  |||| ||||||| |   ||||||| |||    
T  38140591 tcttttcttaggatacgtatatgtgaagtatcttggaaatatcattg-tgtatgtgtggagtatcacataaatatccgataaaatatttattaaaaatta 38140493  T
Q  255 aaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtat 346  Q
    |||||||||||| ||||||||| | | ||| |||| || |  |||| |||| |||||||||  ||||| ||||||| ||| ||||| |||||    
T  38140492 aaataattaattttgatacttcattgatacatatcagcgaacatccgtgaaatatcggtatctgatactggtacgtctccgttttggagtat 38140401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 35428824 - 35428727
Alignment:
Q  107 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||| || ||| |||||| | | |||||||||||||| |||||||||||| ||| || ||||||||| |||||| |||||| |||||||||||||    
T  35428824 tatacatctccactgaattttcagatcattgtctcacttttttacccttcatcttttgtaagatacgtatgtgtgaagtatcttctaagtatccttgt 35428727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 167
Target Start/End: Original strand, 38558643 - 38558769
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||||||  |||||||||||||| ||| ||| || |  | |||||||| |||||  |||    
T  38558643 acaagaagtgtaattttaagtggttca-cgagaaacaattatactgatatatatctaaaattgaatcg-atatatcttcaataaattttcacaactctgt 38558740  T
Q  139 ctcactttcttacccttcatcatttctag 167  Q
    |||||||| ||||| |||||| |||||||    
T  38558741 ctcacttttttacctttcatcttttctag 38558769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 244 - 323
Target Start/End: Original strand, 42794943 - 42795022
Alignment:
Q  244 attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||||| |||||||||| |||| ||||||||| ||| ||||||||||| ||||||| || ||||||||||||| |||||    
T  42794943 attaaaaattaaaataatcaattctgatacttcatggatacgtatccgcgagtatccgtggagtatcggtattccatacg 42795022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 44364368 - 44364254
Alignment:
Q  69 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 168  Q
    ||||||||||  | |||| | |||||||||||||  |||| |||| |||||| ||||||||||||| | ||||||||| |||||||||||| |||||| |    
T  44364368 agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaag 44364269  T
Q  169 atacgtatttgtgaa 183  Q
    | || ||||| ||||    
T  44364268 acacatatttatgaa 44364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 40498744 - 40498676
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtataca 112  Q
    |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| || ||||||    
T  40498744 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 315
Target Start/End: Complemental strand, 26352705 - 26352443
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 151  Q
    |||||| | ||| |||||||||||||| || ||| |||||||| ||||||| || || |||| || | | |||||| |||| |  | |||||||| ||||    
T  26352705 ttttaattggttaatcgagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaacagactcacttttttac 26352606  T
Q  152 ccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat--taaa 249  Q
    | |||||  ||| |||||||||| | |||||| ||||||||||||||   ||| |||| | | || |||  |||| |||||  |||||| | ||  |  |    
T  26352605 ctttcat--tttttaggatacgtttatgtgaagtatcttataagtatatgtgt-gtatttatcgagtatcttataagtatccaataaaatatatatttta 26352509  T
Q  250 atttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    | |||||||||||||||  ||||||  |||||||||||||||| ||||||  ||||||||||||||    
T  26352508 aattaaaataattaattccgatactcagtgggtacgtatccgcgagtatctgtgaagtatcggtat 26352443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 30382908 - 30383063
Alignment:
Q  161 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagatt--aaaatttaaaat 258  Q
    ||||| ||||||||||  |||||| |||||||||| | | |||| |||| |||||| |||  |||| ||||| ||||||| |  ||  |||| |||||||    
T  30382908 tttctgggatacgtataagtgaaaaatcttataaggacctttgt-gtatttgtggattatcatatatgtatccgataaaatattttttaaaaattaaaat 30383006  T
Q  259 aattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    |||||| |  |||||||||||||||||||||||| ||||| | || |||||| ||||    
T  30383007 aattaactccgatacttcgtgggtacgtatccgcgagtattcgtggagtatctgtat 30383063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 36925427 - 36925371
Alignment:
Q  305 agtatcggtattcgatacgggtacgtttccattttgcagtattcggacttcataggt 361  Q
    ||||||||||||||||||  |||||| | ||||||| ||||||||||||||||||||    
T  36925427 agtatcggtattcgatactagtacgtcttcattttggagtattcggacttcataggt 36925371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 323
Target Start/End: Complemental strand, 14749482 - 14749411
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||||||||||||| ||||||| ||||||||||||||||  |||||||  | |||||||| || |||||||    
T  14749482 ttaaaataattaattctgatactccgtgggtacgtatccgagagtatccgcggagtatcggaatccgatacg 14749411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 35428688 - 35428582
Alignment:
Q  254 aaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccat-tttgcagtattcggac 352  Q
    ||||||||||||| | |||||||||| ||||||||  || |||||  ||| ||||||||||| |||||| ||||||| ||| | |||| |||||  ||||    
T  35428688 aaaataattaattttaatacttcgtgagtacgtatttgcgagtatatatggagtatcggtatccgatacaggtacgtctccgtatttggagtatctggac 35428589  T
Q  353 ttcatag 359  Q
    |||||||    
T  35428588 ttcatag 35428582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 40363940 - 40363774
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||| |  |||||||| |||||||  || ||||   ||||||||||||| || || |||| | |||| ||| |||||||||||||    
T  40363940 acaaaaagtataattttaaattattcatcgacaaacaatcatagtgatctgtatctaaaattgaatcatacacatctttactgaatgtttacaacattgt 40363841  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    |||||||| || | |||  ||  ||||||||||| |||| |||||| ||| ||| ||||||| ||||    
T  40363840 ctcacttttttgctctttttctttttctaggataagtatctgtgaagtattttaaaagtatcattgt 40363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 18561171 - 18561094
Alignment:
Q  95 aaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatac 172  Q
    |||||||| || |||||||||| ||| |||||| | |||||||||||||||| |||| ||||||  ||| ||||||||    
T  18561171 aaaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttactcttcatgttttataggatac 18561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 18858380 - 18858273
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcgga 351  Q
    ||||||||||||||| |||||||| ||| ||   |  |||| ||||||| || ||||||| ||| ||||||  |||||  ||||||||| ||||||| ||    
T  18858380 ttaaaataattaattttgatactttgtgagtgtttgcccgcgagtatccgtggagtatcgatatccgatacatgtacgcctccattttgaagtattcaga 18858281  T
Q  352 cttcatag 359  Q
    ||||||||    
T  18858280 cttcatag 18858273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 138
Target Start/End: Original strand, 30382804 - 30382903
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||| ||||||| |||||||||||||||||| || ||||  |||||||||| |||    || |||| |||| | |||||||||||||||||    
T  30382804 acaagaagtataaatttaagtggttcatcgagaaacaattctaatgatgtatatctaaaagtgaacaatacacatctctaatgaatttttacaacattgt 30382903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 21813044 - 21812979
Alignment:
Q  94 taaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc 159  Q
    ||||||||| || ||| |||||| | | ||||| ||||||||||||||||||| |||| |||||||    
T  21813044 taaaattgaatcatattcatttccattgaatttatacaacattgtctcacttttttactcttcatc 21812979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 31 - 349
Target Start/End: Complemental strand, 25430159 - 25429837
Alignment:
Q  31 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 129  Q
    |||||||| |||| |||| ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||| || |||| || | |  | ||||||||    
T  25430159 ccttcattcacaagaagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaattttta 25430060  T
Q  130 caacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacg 228  Q
    ||||||||||||||||| ||||||||||||  |||||||||||| ||| || ||| ||||||||||||||||||| |||||||||||| |||  |||| |    
T  25430059 caacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttg-tgtatctgtggattatcatataag 25429961  T
Q  229 tatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat-tcgatacggg 325  Q
    ||||   ||| | |    |||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| || ||||| |||||  |||||||||    
T  25429960 tatccattaatatattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggagtattggtatcccgatacggg 25429861  T
Q  326 tacgtttccattttgcagtattcg 349  Q
    ||||| ||| ||||| ||||||||    
T  25429860 tacgtctccgttttgtagtattcg 25429837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 31 - 359
Target Start/End: Original strand, 24888754 - 24889085
Alignment:
Q  31 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 129  Q
    |||||||| |||| |||| ||||||||||| ||||| || ||||||||| |||| || ||||||||||||||| || |||| |||| |  | ||||||||    
T  24888754 ccttcattcacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgaatcatatatatttgtcatgaattttta 24888853  T
Q  130 caacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacg 228  Q
    ||| ||||||||||||  ||||||||||||  ||| |||||||| ||| || ||| ||||||||||||||||||| | ||| |||||| |||  |||| |    
T  24888854 caatattgtctcacttgtttacccttcatctttttttaggatacatatatgcgaagtatcttataagtatccttg-tctatttgtggagtatcatataag 24888952  T
Q  229 tatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggt 326  Q
    ||||  |||| | |    |||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||| || | ||| ||||| ||||||||||    
T  24888953 tatccaataatatattttttaaaaattaaaataattaattctgatacttcatgggtacgtatccgcgagtatccgtggaatattggtatccgatacgggt 24889052  T
Q  327 acgtttccattttgcagtattcggacttcatag 359  Q
    |||| ||| ||||| ||||||||  ||||||||    
T  24889053 acgtctccgttttgtagtattcgagcttcatag 24889085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 315
Target Start/End: Original strand, 11789368 - 11789646
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  |||||||||||||| || || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  11789368 acaagaagtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 11789467  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    ||||||||||||| |||||||  ||||||||||| || | |||||| ||||||  ||||||| ||| ||||| |||||| |||   | | ||||| ||||    
T  11789468 ctcactttcttactcttcatctttttctaggatatgtgtctgtgaagtatcttggaagtatcattg-tgtatttgtggagtatcacacaagtatccgata 11789566  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||| |   ||||||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||| || |||||||||||    
T  11789567 aaatatttattaaaaattaaaataattaattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtat 11789646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 291
Target Start/End: Complemental strand, 6166552 - 6166309
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||| || | ||||||||||||||||||||||||| |    
T  6166552 taattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttt 6166453  T
Q  149 tacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 245  Q
    ||| ||||||   |||||||||||||||| | | || ||||||| || |||||||| ||||| ||| || |||   ||| ||||| ||||||| |   ||    
T  6166452 tactcttcatgtttttctaggatacgtatctataaagtatcttagaaatatccttg-tgtatatgtagagtatcacataagtatccgataaaatatttat 6166354  T
Q  246 taaaatttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    ||||| ||||||||||||| |||||||||||||| |||||||||||    
T  6166353 taaaaattaaaataattaa-tatgatacttcgtgcgtacgtatccg 6166309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 43 - 330
Target Start/End: Complemental strand, 12006837 - 12006553
Alignment:
Q  43 taagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 142  Q
    ||||| ||||||||||  ||||||| | |||||||| || |||| ||||||||||||||| || ||||||| || ||| |||||| ||||||||||| ||    
T  12006837 taagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaacattgtc-ca 12006739  T
Q  143 ctttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa 242  Q
    |||| | |||||| ||  |||||||||| ||||| || ||||||||||||||||| |  || ||||| |||||| ||| ||||| ||||| |||||        
T  12006738 ctttttcaccctttattttttctaggatgcgtatatgggaaatatcttataagta-cactggtgtatttgtggagtatcctataagtatccgataatttt 12006640  T
Q  243 gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgt 330  Q
      || ||| |||||||| |||||| ||||||||||||||| ||||||||  |||||||||||| ||||||||| ||||| || |||||    
T  12006639 tttttaaa-ttaaaatatttaattctgatacttcgtgggttcgtatccgagagtatccatgaaatatcggtatccgatatggatacgt 12006553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 32856146 - 32855981
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| || |||||||| |||||||||||||||||| || |||| ||||||||||||||| || ||||||| |||||| ||| |||||||||||||    
T  32856146 acaagaagtatagttttaagtggttcatcgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgt 32856048  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| |||| |||| |||||||  |||||||||||||||| |||||| ||||||||||||||| ||||    
T  32856047 ctcgcttttttactcttcatctttttctaggatacgtatctgtgaagtatcttataagtatcattgt 32855981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 323
Target Start/End: Complemental strand, 9410058 - 9409774
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  |||||||||||| |||| || ||||  |||| ||||||||| || ||||||| | || | ||||||||||| |  ||    
T  9410058 acaagaagtataattttaagtgtttcatcgagaaataattctattgatgaatatgtaaaattgagtcatatacatctataatgaatttttacaaaa--gt 9409961  T
Q  139 ctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    || ||||| |||| ||||||  ||| ||||||||| | | | |||| ||||||| |||||||||||| ||||||||||| ||| | ||| ||||| ||||    
T  9409960 cttacttttttactcttcatttttttctaggatacatgtctctgaagtatcttagaagtatccttgt-gtatctgtggagtatcccataagtatccgata 9409862  T
Q  238 aaaaag--attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    | | |   ||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||| || ||||||||||| |||||||    
T  9409861 acatatttattaaaaattaaaataattaattatgatacttcgtggatacgtatccgtgagtatccgtggagtatcggtatccgatacg 9409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 62 - 299
Target Start/End: Complemental strand, 13003466 - 13003232
Alignment:
Q  62 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcat 161  Q
    ||||||||||||||||| || | || ||||||||||||||| || ||||||  |||| | ||||| ||||||||||||||||||| |||| ||||||  |    
T  13003466 ttcatcgagaaacaattctagttatgcatatctaaaattgaatcatataca--tctattgaatttctacaacattgtctcacttt-ttacacttcatatt 13003370  T
Q  162 ttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa-aagattaaaatttaaaataa 260  Q
    ||||| ||| | ||| ||||||||||||| |||||||| ||| || |||| |||| |||  |||| |||| |||||||| |   || ||| |||||||||    
T  13003369 ttctacgatgcatatatgtgaaatatcttgtaagtatctttg-tgaatctatggagtatcatataagtattagataaaatattttttaaaattaaaataa 13003271  T
Q  261 ttaattatgatacttcgtgggtacgtatccgcaagtatc 299  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  13003270 ttaattatgatactttgtgggtacgtatccgcgagtatc 13003232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 18928566 - 18928721
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| || ||||||| || | | ||||||||||||||||||||| ||| |    
T  18928566 taattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaattttt 18928665  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| | ||||  ||||||||||| |||| ||| || ||||||||||||||| ||||    
T  18928666 tactcctcatattttctaggataagtatatgtaaagtatcttataagtatcattgt 18928721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 71 - 359
Target Start/End: Original strand, 17748925 - 17749215
Alignment:
Q  71 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctagga 169  Q
    |||||||| || |||| ||||||  ||||||| || ||||||| |||||| ||| | |||||| |||||||||||| |||| |||| |  ||| ||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctctactgaatgtatacaacgttgtctcacttttttactcttcgtatttttctagga 17749024  T
Q  170 tacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaataattaatta 267  Q
    |||||||||||||| |||||||||||||||| || |||||||| | | |||  |||| ||||| | ||||| |    |||||| || ||||||||||||     
T  17749025 tacgtatttgtgaagtatcttataagtatccatg-tgtatctgcgaagtatcgtataagtatccgttaaaatattttttaaaaatttaaataattaattc 17749123  T
Q  268 tgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcggacttcatag 359  Q
    || |||||||||||| ||||||||||| ||||  || ||||||||||| |||||  ||||||| || ||||   ||||| ||| ||||||||    
T  17749124 tgttacttcgtgggtgcgtatccgcaaatatctgtggagtatcggtatccgatataggtacgtctcaatttcagagtatccgggcttcatag 17749215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 39 - 204
Target Start/End: Original strand, 23877387 - 23877553
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    ||||||||| ||||||||||| ||||||||  |||||||| || | || ||||||||||||||| || |||| || |||||| ||| ||||||||||  |    
T  23877387 acaataagtataattttaagtggttcatcggaaaacaattctagtcatgcatatctaaaattgaatcatatatatctctactgaatgtttacaacatgat 23877486  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||||||||| |||||||  ||| ||||||| || | |||||| ||| ||||||||||| ||||    
T  23877487 ctcactttcttactcttcatctttttgtaggatatgtttatgtgaagtattttataagtatcattgt 23877553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 24728632 - 24728715
Alignment:
Q  122 aatttttacaacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||| || ||| ||||||||||||||||||||    
T  24728632 aatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgt 24728715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 11990863 - 11990590
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||| ||| ||| ||| |||||||||| |||| || ||||||||||||||| |  ||||||| || ||| ||||||  ||||| |||| ||||||      
T  11990863 taatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatatacatatccactgaattttcgcaacaatgtcacacttttc 11990764  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat-ta 247  Q
    ||||||||||| ||||||||||| |||| | | || ||| ||||||||||  ||| ||||||  |||| ||| |||||  ||||  ||||      |  |    
T  11990763 tacccttcatcttttctaggatatgtatattttaagtattttataagtatttttg-tgtatccatggagtatcctataactatccaataatttttttaaa 11990665  T
Q  248 aaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
    ||| |||||||||| |||| | |||||  ||| ||||||||| |||||||||| |||||||||||||| ||||||    
T  11990664 aaaattaaaataatcaattctaatactaggtgagtacgtatcagcaagtatccgtgaagtatcggtatccgatac 11990590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 161 - 315
Target Start/End: Original strand, 11755785 - 11755940
Alignment:
Q  161 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaat 258  Q
    ||||||||||| |||| |||||| |||||||||||||||| || | ||||||| ||||||  |||| ||||| ||||||| |    |||||| |||||||    
T  11755785 tttctaggatatgtatatgtgaagtatcttataagtatcc-tggtctatctgtagaatatcttataagtatccgataaaatattttttaaaaattaaaat 11755883  T
Q  259 aattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    | |||||||| ||||||||||  |||||||||   ||||||| | ||||||| ||||    
T  11755884 atttaattataatacttcgtgaatacgtatccaagagtatccgtaaagtatcagtat 11755940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 18320814 - 18320731
Alignment:
Q  62 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcacttt 146  Q
    |||||| ||||||| || |||| || ||||||||||||||| || ||||||| || |||||| ||| ||||||||||||||||||    
T  18320814 ttcatcaagaaacatttctacttatgcatatctaaaattgaatcatatacatctccactaaa-tttcacaacattgtctcacttt 18320731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 16591524 - 16591642
Alignment:
Q  112 atttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatct 211  Q
    ||||| |||||||||| ||||||||||||| |||| |||| ||| ||  ||| |||||||| || || |||| ||| ||||||||||| ||| |||| ||    
T  16591524 atttccactaaattttcacaacattgtctcgcttttttactcttaattttttataggatacatacttttgaagtattttataagtatctttg-tgtaact 16591622  T
Q  212 gtggaatattctatacgtat 231  Q
    || || ||||||||| ||||    
T  16591623 gtagagtattctataagtat 16591642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 195
Target Start/End: Original strand, 31431397 - 31431544
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaa-aattgattcgtatacatttctactaaatttttacaacattgtctcactttc 147  Q
    ||||||||||| ||||||| | |||||||| || | || ||||||||| |||||| || ||||||| |   || ||||||||||| ||||||||||| |     
T  31431397 taattttaagtggttcatcaaaaaacaattctattaatacatatctaataattgaatcatatacatctgcgctgaatttttacaatattgtctcactctt 31431496  T
Q  148 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataag 195  Q
    ||| ||| |||| |||||||| || |||| | | || |||||||||||    
T  31431497 ttatcctccatcttttctaggttatgtatatctaaattatcttataag 31431544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 9136733 - 9136883
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||| | ||| ||||| |||||||| || |||||| ||| | ||||||| || ||||  | || | | |||||| ||||||   ||||||||| |    
T  9136733 taattttaattggttaatcgaaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcacttttt 9136832  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 199  Q
    ||||||||||  |||| ||||||||| | |||||| ||| |||||||||||    
T  9136833 tacccttcattttttccaggatacgtctctgtgaagtatgttataagtatc 9136883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 18320730 - 18320690
Alignment:
Q  161 tttctaggatacgtatttgtgaaatatcttataagtatcct 201  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  18320730 tttctaggatacgtatatgtgaagtatcttataagtatcct 18320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 37231859 - 37231784
Alignment:
Q  83 tgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcat 158  Q
    |||||||||||| ||||||| |||||||||| || | | |||||| ||||||   ||||||||| |||||||||||    
T  37231859 tgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacacaatctcacttttttacccttcat 37231784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 11755705 - 11755763
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattga 102  Q
    |||| ||||||||||  ||||||| |||||||||| |||| || |||||||||||||||    
T  11755705 aagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattga 11755763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Complemental strand, 35536848 - 35536811
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatc 289  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  35536848 ttaaaataattaattatgatactccgtgagtacgtatc 35536811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 39 - 362
Target Start/End: Original strand, 688074 - 688399
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| |  ||||||| | || | |||||||||| ||||||    
T  688074 acaagaagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctataatgaatttttacagcattgt 688173  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||| ||| |||| |||||||  |||||  |||||||||  ||||| ||||||| ||||||||||| |||||| || || |||   ||| ||||| ||||    
T  688174 ctcatttttttactcttcatctttttctttgatacgtatacgtgaagtatcttagaagtatccttg-tgtatccgttgagtataacataagtatctgata 688272  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||| |   ||||||| ||||||||| ||||| ||||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||||||| | ||||    
T  688273 aaatatttattaaaaattaaaataaataattctgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacgggtacatctcca 688372  T
Q  336 ttttgcagtattcggacttcataggta 362  Q
    ||||| ||||| || |||| |||||||    
T  688373 ttttggagtatccgaactttataggta 688399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 49 - 291
Target Start/End: Original strand, 2988133 - 2988376
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||||| |||||| ||| |||| |||||| ||| ||||| |    
T  2988133 taattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatctctactgaatgtttataacattatctgacttt-t 2988231  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 245  Q
    ||| |||||||  ||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||| |||  |||| ||||| | ||||| |    |    
T  2988232 tactcttcatctttttctaggatacgtatttgtgaactatcttataagtatcattg-tgtatctgcggagtatcgtataagtatccgttaaaatattttt 2988330  T
Q  246 taaaatttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    ||||| || |||||||||||| |||||||| ||| || ||||||||    
T  2988331 taaaaatttaaataattaattctgatactttgtgtgtgcgtatccg 2988376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 39 - 323
Target Start/End: Original strand, 2032350 - 2032637
Alignment:
Q  39 acaataagtgtaattttaagtagttcatc-gagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 137  Q
    |||| |||| |||||||||||  |||||| ||||||||||| || |||| ||||||||||||||| || |||||||   || | ||||||||||| ||||    
T  2032350 acaagaagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacatcaataatgaatttttacaatattg 2032449  T
Q  138 tctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagat 236  Q
    ||||||||| |||| ||||| |  |||||||||||| | | |||||| ||||||| ||||||||||| ||||| |||||| |||   |||  |||| |||    
T  2032450 tctcacttttttactcttcacctttttctaggatacatgtctgtgaagtatcttagaagtatccttg-tgtatatgtggagtatcacataaatatccgat 2032548  T
Q  237 aaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    |||| |   ||||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||    
T  2032549 aaaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacg 2032637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 49 - 323
Target Start/End: Original strand, 12312028 - 12312303
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtc-tcactttc 147  Q
    |||||| |||| ||| |||||||||||||| || |||| ||||||||||||||| | ||||||||||| ||| | |||| ||||||||||| | ||||||    
T  12312028 taatttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtctttactttc 12312127  T
Q  148 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaa-aaagatt 246  Q
    |||||||||||  |||||||||||| ||| | |||| ||||||||||||||| ||| |||| || |||| |||  |||| ||||  ||||||  |   ||    
T  12312128 ttacccttcattttttctaggatacatatctttgaagtatcttataagtatcattg-tgtaactatggagtatcttataagtattggataaattattttt 12312226  T
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
     ||| |||||||||||||||  |||||||| | ||||||||||||||||||||| |  |||||| |||| |||||||    
T  12312227 taaaattaaaataattaattccgatacttcataggtacgtatccgcaagtatccgtagagtatcagtatccgatacg 12312303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 311
Target Start/End: Complemental strand, 8486064 - 8485797
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||  ||||||| |||||||||| ||||||| ||||||||||||||| || ||||||| |  ||| || ||| |||||| | |||||     
T  8486064 aagtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatctcaa 8485966  T
Q  144 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa- 242  Q
    ||| |||||||| ||  |||||||||||||||| |||||| | ||||||||||||| | | ||||||| |||| |||  |||| ||||   |||||| |     
T  8485965 ttttttaccctttattttttctaggatacgtatatgtgaagtgtcttataagtatcatag-tgtatctatggagtatcttataagtattcaataaaatat 8485867  T
Q  243 -gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcg 311  Q
       || ||| |||||||| ||||||  |||||||||||||||||||||    ||||||| ||||||||||    
T  8485866 ttttttaaaattaaaatatttaattcagatacttcgtgggtacgtatctaagagtatccgtgaagtatcg 8485797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 39 - 359
Target Start/End: Complemental strand, 10229573 - 10229251
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||||||| | |||||||| || | || |||||||| |||||| || ||||||| ||||   ||| ||| |||||||||    
T  10229573 acaagaagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgt 10229474  T
Q  139 ctcactttcttacccttcatcatttcta-ggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| ||||||| |||  | |||||||||| |||||||||||| |||||| | ||||| ||||| |  ||  ||  |||| |||||   ||    
T  10229473 ctcacttttttactcttcatctttttgaaggatacgtatatgtgaaatatct-ataagtgttcttgt-gtatccgcagagaatcgtataagtatccatta 10229376  T
Q  238 aaaaagatta----aaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttc 333  Q
    ||| |  ||     ||||||||| ||||||||| ||||||||||||||| ||||||||| | ||| | || |||||||||||  ||||||||||||| ||    
T  10229375 aaatatttttttttaaatttaaa-taattaattctgatacttcgtgggtgcgtatccgcgaatatacgtggagtatcggtatctgatacgggtacgtctc 10229277  T
Q  334 cattttgcagtattcggacttcatag 359  Q
    | ||||| ||||| | ||||||||||    
T  10229276 cgttttgaagtatccagacttcatag 10229251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 278
Target Start/End: Original strand, 32340276 - 32340509
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||| | ||||||||| |||||||| || |||| ||||| | ||||||| |  ||||||| | |||| |||||| |||||||||||||||    
T  32340276 aagtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactgaatttt-acaacattgtctcac 32340374  T
Q  144 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa 242  Q
    ||| ||||||||||||  |||||||||||| ||| |||||| ||||||| || ||| |||| |||||||||| |||||   ||| ||||| ||||||| |    
T  32340375 ttttttacccttcatctttttctaggatacatatatgtgaagtatcttagaattat-cttg-tgtatctgtgaaatatcacataagtatccgataaaata 32340472  T
Q  243 --gattaaaatttaaaataattaattatgatacttcgt 278  Q
        ||||||| | |||||||||||||| |||||||||    
T  32340473 ttttttaaaatgt-aaataattaattataatacttcgt 32340509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 146
Target Start/End: Complemental strand, 30928436 - 30928334
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| ||||||| |||||||||| ||||| | ||||| ||||||||| || ||||||| |||||| ||||| |||||||||||||| |    
T  30928436 aagtataattttaagtggttcatcaagaaacaattatactggtgcatatataaaattgaatcatatacatctctacttaatttctacaacattgtctcgc 30928337  T
Q  144 ttt 146  Q
    |||    
T  30928336 ttt 30928334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 323
Target Start/End: Original strand, 12283903 - 12283974
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| || ||||||||||| |||||||    
T  12283903 ttaaaataattaattttgatacttcgtgggtacatatccgcaaatatccgtggagtatcggtatccgatacg 12283974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 183
Target Start/End: Complemental strand, 22053983 - 22053869
Alignment:
Q  69 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 168  Q
    ||||||||||  | |||| | |||||||||||||  |||| |||| |||||| ||||||||||||| | ||||||||| |||||||||||| |||||| |    
T  22053983 agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaag 22053884  T
Q  169 atacgtatttgtgaa 183  Q
    | || ||||| ||||    
T  22053883 acacatatttatgaa 22053869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 7495258 - 7495328
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
    |||||||||||||||  |||||| | | | || |||||||||||||||||||||||||| |||||| ||||    
T  7495258 ttaaaataattaatttcgatactccatagatatgtatccgcaagtatccatgaagtatcagtattcaatac 7495328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 204
Target Start/End: Original strand, 22297370 - 22297486
Alignment:
Q  88 catatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaata 186  Q
    ||||||||||||| | || ||||||| |||| | |||||||||||| |||||||||||| || |||||||||  ||| || ||||||| | |||||| ||    
T  22297370 catatctaaaattaagtcatatacatctctattgaatttttacaacgttgtctcacttt-tttcccttcatctttttttatgatacgtttctgtgaagta 22297468  T
Q  187 tcttataagtatccttgt 204  Q
      ||| ||||||||||||    
T  22297469 cgttacaagtatccttgt 22297486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 6724483 - 6724590
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctact-aaatttttacaacattgtctcactttctta 150  Q
    |||||| | ||| ||||| |||||||| ||||||||||||||| ||||||| || ||||||| || | | ||||||| ||||||  | |||||||| |||    
T  6724483 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcacaacacagcctcactttttta 6724582  T
Q  151 cccttcat 158  Q
    || |||||    
T  6724583 ccattcat 6724590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 10567407 - 10567349
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaa 97  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||    
T  10567407 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaa 10567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 39 - 301
Target Start/End: Complemental strand, 4775918 - 4775659
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    ||||||||| ||||||||||| | | ||||||||||||||    |||| |||||||||||||||| | |||||||||| |||||||| | ||||||||||    
T  4775918 acaataagtataattttaagtggattatcgagaaacaattactttgatgcatatctaaaattgat-catatacatttccactaaattatcacaacattgt 4775820  T
Q  139 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 238  Q
    |||||||| |||||||||||| |||||||||||  ||||||||||  ||||||||||||| ||||  |||| ||| || ||||||||| ||||| |||||    
T  4775819 ctcacttttttacccttcatcttttctaggatatatatttgtgaagcatcttataagtattcttg-ggtatttgttgagtattctataagtatc-gataa 4775722  T
Q  239 aa-aagattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatcca 301  Q
    || |   |||||| |||||||||||||||||||||||| || ||||||||||||||||||||||    
T  4775721 aatatttttaaaaattaaaataattaattatgatactttgt-ggtacgtatccgcaagtatcca 4775659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 339
Target Start/End: Complemental strand, 45774134 - 45773839
Alignment:
Q  42 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 141  Q
    |||||| ||||||||||| |||||||||||||||||| || ||||  |||||||||||||| || ||||||| | || | ||||||||||||||||||||    
T  45774134 ataagtataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctc 45774035  T
Q  142 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 240  Q
    ||||| |||  |||||||  |||||||||||||||| |||||| ||||||| || ||     |  |||||| |||| |||   ||| ||||| |||||||    
T  45774034 acttttttattcttcatctttttctaggatacgtatctgtgaagtatcttaaaatta-----gaggtatctttggagtatcacataagtatccgataaaa 45773940  T
Q  241 aa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattt 338  Q
     |   ||||||| |||||||||||||||  |||||||| | | ||||||||||||||||||| |||||||||| ||| |||||| || |||| |||||||    
T  45773939 tatttattaaaaattaaaataattaatttcgatacttcatagatacgtatccgcaagtatccgtgaagtatcgatatccgatacaggcacgtctccattt 45773840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 39 - 315
Target Start/End: Complemental strand, 2295502 - 2295225
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||||||||||||||| || ||||  |||||| ||||||| || ||||||| | || | |||||||||||||||||    
T  2295502 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgagtcctatacatctataatgaatttttacaacattgt 2295403  T
Q  139 ctcactttcttacccttcatcatttct-aggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||| ||| |||  ||||||| ||| | ||||||||| | |||||| ||||||| ||||||| |||| ||||||||||||||| | |||  |||| ||||    
T  2295402 ctcaattt-ttattcttcatctttttttaggatacgtgtctgtgaagtatcttagaagtatcattgt-gtatctgtggaatatcccataaatatctgata 2295305  T
Q  238 aaaaag--attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||| |   ||||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||| || |||||||||||    
T  2295304 aaatatttattaaaaattaaaataattaattccgatacttcgtggatacgtatccgcgagtatccttggagtatcggtat 2295225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 50 - 356
Target Start/End: Original strand, 47922951 - 47923260
Alignment:
Q  50 aattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctt 149  Q
    |||||||| | ||||||| ||||||||||||| |||| | ||||||||||||| || |||  || |||||  | ||||||||||||| | ||||||| ||    
T  47922951 aattttaactggttcatcaagaaacaattttattgatgcgtatctaaaattgaatcatatggatctctacagagtttttacaacattatgtcactttgtt 47923050  T
Q  150 acccttcatcatttct--aggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagatta 247  Q
    || ||||||  ||| |  | |||| |||  |||||| ||||||| ||||||| |||| ||||||||| |||||  |||| ||||| ||||||| |  ||     
T  47923051 actcttcattttttttttaagatatgtaaatgtgaagtatcttagaagtatcattgt-gtatctgtgaaatatcatataagtatccgataaaatattttt 47923149  T
Q  248 --aaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagta 345  Q
      ||| ||||||||||||||||||||||| |||||||||||||| || ||||||| |||||||| ||||| |||||||||||||| ||| ||||  ||||    
T  47923150 ttaaaattaaaataattaattatgatactccgtgggtacgtatctgcgagtatccgtgaagtattggtatccgatacgggtacgtctccgttttagagta 47923249  T
Q  346 ttcggacttca 356  Q
    ||||| |||||    
T  47923250 ttcgggcttca 47923260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 44 - 199
Target Start/End: Complemental strand, 53586524 - 53586368
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||||| ||||||| || ||||||| |||| | ||| ||||||||||||||||||    
T  53586524 aagtataattttaagtagttcatcgagaaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcac 53586425  T
Q  144 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatc 199  Q
    | | ||||||||||||  |||||||||||||||| |||||| |||||||||||||||    
T  53586424 tattttacccttcatctttttctaggatacgtatctgtgaagtatcttataagtatc 53586368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 10037870 - 10038137
Alignment:
Q  51 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 150  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||||||||||| || ||||||| || | | ||||||  ||||||||||||||||| |||    
T  10037870 attttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcactttttta 10037969  T
Q  151 cccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatat--tctatacgtatcagataaaaaa--gatt 246  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||| ||||| || | ||| |||||| |||  | |||| ||||| ||||||| |    ||    
T  10037970 cccttcatcttttctaggatacatatatgtgaaatatcttataattatccatg-tctatatgtggagtatcctatataagtatccgataaaatatttttt 10038068  T
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    || |  |||||||||||||| | ||| ||||||| |||| |||||  |||||||||| || ||||||||    
T  10038069 aataactaaaataattaattttaatatttcgtggatacgcatccgtgagtatccatggagcatcggtat 10038137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 44987394 - 44987234
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||| || | ||||| || | | ||||||||||||||| |    
T  44987394 acaagaagtataattttaagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattat 44987295  T
Q  139 ctcac-tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    ||||| ||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  44987294 ctcactttttttacctttcatcttttctaggatacgtatttgtgaaacatcttataagtat 44987234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 39 - 291
Target Start/End: Original strand, 35103508 - 35103762
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||||  ||| ||||| || |||| ||||||||||||||| || ||||||||| || | |||||||||||||||||    
T  35103508 acaagaagtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgt 35103607  T
Q  139 ctcactttcttacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| ||||||   |||||||||||| ||| | |||| ||||||| ||||||| ||||| ||| ||| || |||   ||  ||||| ||||    
T  35103608 ctcacttttttactcttcatgtttttctaggatacatatctatgaagtatcttagaagtatctttgtt-tatatgtagagtatcacattagtatctgata 35103706  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    ||| |    |||||| ||||||||||||||| |||||||||||| |||||||||||    
T  35103707 aaatatttgttaaaaattaaaataattaattttgatacttcgtgagtacgtatccg 35103762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 35823608 - 35823742
Alignment:
Q  65 atcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttc 164  Q
    |||||||||||||| |||| |||||||||||||||||| |  |||||||||| | ||  |||| ||||||||||||||||||||||||||||||| ||||    
T  35823608 atcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttacccttcatcttttc 35823707  T
Q  165 taggatacgtatttgtgaaatatcttataagtatc 199  Q
    || |||| | || | |||| |||||||||||||||    
T  35823708 tacgataggcatctttgaagtatcttataagtatc 35823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 24913890 - 24913782
Alignment:
Q  128 tacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatac 227  Q
    |||||||| |||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| | |||     
T  24913890 tacaacatcgtctcacttttttccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttg-tgtatctgcggagtatacaataa 24913792  T
Q  228 gtatcagata 237  Q
    ||||||||||    
T  24913791 gtatcagata 24913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 53018559 - 53018810
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    ||||||||| ||||||||| |  ||||| ||||||||||| || |||| ||||||||||||||| || ||||||  |  | | |||||||| || |||||    
T  53018559 acaataagtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattgaatcatatacagctagaatgaatttttaaaagattgt 53018658  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||| ||| |||| |||||||  |||||||||||||||| |||||| ||||||| | ||||||||| ||||| |||||| |||   ||| ||||| ||||    
T  53018659 ctcatttttttactcttcatctttttctaggatacgtatatgtgaagtatcttagatgtatccttg-tgtatatgtggagtatcaaataagtatccgata 53018757  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtat 288  Q
     || |   ||||||| ||||||||| ||||| | ||||||||||| |||||||    
T  53018758 taatatttattaaaaattaaaataactaattttaatacttcgtggatacgtat 53018810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 299
Target Start/End: Original strand, 15476750 - 15477002
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| |||||||   ||||||||  | | || ||||||||||||||| || || |||| | || | |||| ||||||||||||||||| || |    
T  15476750 taattttaagtggttcatcagtaaacaattcaattaatgcatatctaaaattgaatcttacacatctataatgaattcttacaacattgtctcacctttt 15476849  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 245  Q
    ||| |||||||  |||||| ||||||||| | |||| ||||||| ||||||||||| |||||||||||| |||   | | ||||| ||||||| |   ||    
T  15476850 tactcttcatctttttctaagatacgtatctttgaagtatcttagaagtatccttg-tgtatctgtggagtatcacacaagtatctgataaaacatttat 15476948  T
Q  246 taaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatc 299  Q
    ||||| |||||||| ||||||  ||||||||||  |||||||||||| ||||||    
T  15476949 taaaaattaaaatagttaattccgatacttcgtcagtacgtatccgcgagtatc 15477002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 24917643 - 24917499
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| |||||||||||||||||| |||| ||  |||||||||||||| || |  |||| |||||           ||||| |||||||||| |    
T  24917643 taattttaagtggttcatcgagaaacaattctactaatgtatatctaaaattgaatctttaacatctctac-----------aacatcgtctcacttttt 24917555  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  24917554 tccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttgt 24917499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 266
Target Start/End: Original strand, 19721701 - 19721930
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  || || ||||||||||| || |||| |||||| |||||| | || |||| || | || | |||||||||||||| ||    
T  19721701 acaagaagtataattttaagtgtttaattgagaaacaattctattgatgcatatccaaaattaagtcatatatatctataatgaatttttacaacatcgt 19721800  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| |||||||  |||||||||||||| | |||||| ||||||| || |||| ||| |||||||||||| |||   ||| ||||| ||||    
T  19721801 ctcacttttttactcttcatctttttctaggatacgtgtatgtgaagtatcttagaaatatcattg-tgtatctgtggagtatcacataagtatccgata 19721899  T
Q  238 aaaaa--gattaaaatttaaaataattaatt 266  Q
    ||| |   ||||||| |||||||||||||||    
T  19721900 aaatatttattaaaaattaaaataattaatt 19721930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 289
Target Start/End: Complemental strand, 40217673 - 40217435
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 151  Q
    |||||||| ||| ||| |||||||||| ||| ||  ||||  ||||||||| || ||||||| | |||| |||||||| |||||||||||||||| ||||    
T  40217673 ttttaagt-gtttatcaagaaacaattctaccgacgcatacataaaattgaatcatatacatctttactgaatttttataacattgtctcacttttttac 40217575  T
Q  152 ccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaa----agatt 246  Q
    ||||||||  ||||||||||| |||| |||||| |||| ||||||||||    |||||| | |||| |||  |||| ||||| ||||||||       ||    
T  40217574 ccttcatctttttctaggatatgtatatgtgaagtatcatataagtatc---tttgtatttatggagtatcatataagtatccgataaaaatattttttt 40217478  T
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatc 289  Q
    |||| || |||||||||||| ||||||||| ||||||||||||    
T  40217477 aaaaatttaaataattaattctgatacttcatgggtacgtatc 40217435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 27675539 - 27675401
Alignment:
Q  68 gagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttca--tcatttct 165  Q
    ||||||||||| || |||| ||||||||||||||| || ||||||| ||| || ||| || |||||||||||||||| | ||||||||||  |  |||||    
T  27675539 gagaaacaattctattgatgcatatctaaaattgaatcatatacatctctgctgaatcttcacaacattgtctcactattttacccttcattttttttct 27675440  T
Q  166 aggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||||||| |||||| | |||||||| | |||||||    
T  27675439 aggatacgtatatgtgaagtgtcttataaatgtccttgt 27675401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 28102017 - 28102139
Alignment:
Q  53 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 152  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||| |  ||||||| || ||| |||||| | ||||| |||||| ||| |||||    
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataacatcgtctca-ttttttacc 28102115  T
Q  153 cttcatcatttctaggatacgtat 176  Q
    ||||||| ||| || | |||||||    
T  28102116 cttcatcttttataagttacgtat 28102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 4214134 - 4214204
Alignment:
Q  245 ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    |||||| ||||||||||||||| || ||||||||||||||||||| || |||| || ||||||||||||||    
T  4214134 ttaaaaattaaaataattaattctggtacttcgtgggtacgtatctgcgagtacccgtgaagtatcggtat 4214204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 47724801 - 47724841
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgc 292  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  47724801 ttaaaataattaattctgatacttcgtgggtacgtatccgc 47724841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 53586321 - 53586253
Alignment:
Q  255 aaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||||||||||||||||||| |||||| | ||||||| || |||| ||  ||||||||||||||||||    
T  53586321 aaataattaattatgatacttggtgggtgcctatccgcgagcatccgtggcgtatcggtattcgatacg 53586253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 322
Target Start/End: Original strand, 34075281 - 34075438
Alignment:
Q  166 aggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat--taaaatttaaaataatta 263  Q
    ||||||||| |||||||| |||||||||||||||  ||| ||||| || || |||   ||| ||||| ||||||| | ||  |  || ||||||||||||    
T  34075281 aggatacgtctttgtgaagtatcttataagtatctatgt-gtatccgtcgagtatctcataagtatccgataaaatatatattttaaattaaaataatta 34075379  T
Q  264 attatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
    |||  ||||||  |||||||||||||||  |||||||| | ||||||||||| ||||||    
T  34075380 attccgatactctgtgggtacgtatccgagagtatccacggagtatcggtatccgatac 34075438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 298
Target Start/End: Original strand, 2243064 - 2243118
Alignment:
Q  244 attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtat 298  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||| ||| |||||    
T  2243064 attaaaaattaaaataattaattctgatacttcatgggtacgtattcgcgagtat 2243118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 204
Target Start/End: Complemental strand, 45661911 - 45661801
Alignment:
Q  94 taaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttata 193  Q
    ||||||||| || ||||| || | ||| |||||| |||||||||||||||||| |||| ||||||| ||| |||||||  ||| | |||| |||| || |    
T  45661911 taaaattgaatcatatacgttcccactgaattttcacaacattgtctcacttttttactcttcatcttttataggatagatatctttgaagtatcgtaaa 45661812  T
Q  194 agtatccttgt 204  Q
    |||||| ||||    
T  45661811 agtatcattgt 45661801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 151
Target Start/End: Complemental strand, 6008333 - 6008221
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| |||||||||||||||||| || | || |||||||| |||||| || ||| | | ||| |||||| ||||  | ||||     
T  6008333 acaagaagtataattttaagtggttcatcgagaaacaattctagttatacatatctataattgaatcatatccctctctcctaaatgtttaacaaattgc 6008234  T
Q  139 ctcactttcttac 151  Q
    |||||||| ||||    
T  6008233 ctcacttttttac 6008221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 27675359 - 27675303
Alignment:
Q  245 ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatcca 301  Q
    |||||| |||||||||||| ||  |||||||| ||||||||||||||| ||||||||    
T  27675359 ttaaaaattaaaataattatttccgatacttcatgggtacgtatccgcgagtatcca 27675303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 1052422 - 1052369
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattga 102  Q
    ||||||||||| ||| |||||||||||||| || |||| ||||| |||||||||    
T  1052422 taattttaagtggttaatcgagaaacaattctagtgatgcatatgtaaaattga 1052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 7208693 - 7208786
Alignment:
Q  253 taaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtat 346  Q
    |||||||||||||||  ||||||||||| ||  |||| |  ||||||  |||||||||| ||| ||||||| |||||| ||| ||||| |||||    
T  7208693 taaaataattaattacaatacttcgtggatatatatctgagagtatctgtgaagtatcgatatccgatacgtgtacgtctccgttttggagtat 7208786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 339
Target Start/End: Complemental strand, 1052280 - 1052196
Alignment:
Q  255 aaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccatttt 339  Q
    |||||||||| |  ||||||||||  || ||||||||| | ||||| |  ||||||||||| | |||||||||||| ||||||||    
T  1052280 aaataattaactccgatacttcgttagtgcgtatccgcgaatatccgtagagtatcggtatccaatacgggtacgtctccatttt 1052196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2242922 - 2242978
Alignment:
Q  107 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt 163  Q
    ||||||| | || |||||||||| |||||||||||||||| ||||  ||||||||||    
T  2242922 tatacatctataataaatttttataacattgtctcacttttttactgttcatcattt 2242978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 4110251 - 4110374
Alignment:
Q  107 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttg 206  Q
    |||||||||| ||| |||||| ||||||||||  |||||| |||| ||||||| |||  | ||||| ||| | | || ||||||| || ||| ||| ||     
T  4110251 tatacatttccacttaattttcacaacattgtaccacttttttactcttcatcttttaaaagatacatatctttaaagtatcttacaaatatactt-ttc 4110349  T
Q  207 tatctgtggaatattctatacgtat 231  Q
    |||||||||||||| ||||| ||||    
T  4110350 tatctgtggaatatcctataagtat 4110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 28103609 - 28103669
Alignment:
Q  254 aaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggta 314  Q
    ||||||||||||||  ||| ||| ||||||||||  ||| |||||| ||||||||||||||    
T  28103609 aaaataattaattacaatatttcatgggtacgtactcgcgagtatctatgaagtatcggta 28103669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 62 - 315
Target Start/End: Complemental strand, 8008 - 7753
Alignment:
Q  62 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-a 160  Q
    ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | || | ||||||||||||||||||||||||| |||| |||||||      
T  8008 ttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctt 7909  T
Q  161 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaat 258  Q
    |||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||| |||   ||| ||||  ||||||| |   ||||||| |||||||    
T  7908 tttctaggatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgtggagtatcacataagtattcgataaaatatttattaaaaattaaaat 7810  T
Q  259 aattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||||||||  |||||||||||| ||||||||||| ||||||| |  |||||||||||    
T  7809 aattaattccgatacttcgtggatacgtatccgcgagtatccgtagagtatcggtat 7753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 315
Target Start/End: Original strand, 31513615 - 31513890
Alignment:
Q  42 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 141  Q
    |||||| ||||||||| |  ||||||||||||||||| || |||| ||||||||||||||| || ||||||  | || ||||||||||||||||||||||    
T  31513615 ataagtataattttaactgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacacctataataaatttttacaacattgtctc 31513714  T
Q  142 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 240  Q
    ||||| |||| | |||||  |||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||| |||   ||| ||||| |||||||    
T  31513715 acttttttactcctcatctttttctaggatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgtggagtatcacataagtatccgataaaa 31513813  T
Q  241 aa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
     |   ||||||| |||||||||||||||  |||| ||||||| || |||||||| ||||||| | ||||||||||||    
T  31513814 tatttattaaaaattaaaataattaattccgatagttcgtggatatgtatccgcgagtatccgtaaagtatcggtat 31513890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 39 - 340
Target Start/End: Complemental strand, 14287147 - 14286844
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||||| || ||||||||| |||| || ||||||||||||||  || ||||||| ||| || |||||||||||||||||    
T  14287147 acaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgt 14287048  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| || |||||||||  |||||||||||| ||| || ||| ||||||||||||||| ||| ||||||| |||| |||  |||| ||||| ||||    
T  14287047 ctcactttttttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattg-tgtatctatggagtatcatataagtatccgata 14286949  T
Q  238 aaaaaga--ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    | | | |  ||  || |||||||||||||||  |||||||| || ||| |||||||| ||||||| || ||||| ||||| |||||||||||||| |||     
T  14286948 atatatattttttaaattaaaataattaattccgatacttcatgagtatgtatccgcgagtatccgtggagtattggtatccgatacgggtacgtctccg 14286849  T
Q  336 ttttg 340  Q
    |||||    
T  14286848 ttttg 14286844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 49 - 323
Target Start/End: Original strand, 11767650 - 11767926
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||| ||||||||| |||| || | || ||||||||||||||| || |||| ||  ||||  |||||||||||||||||||||| || |    
T  11767650 taattttaagtggttaatcgagaaaaaattctagttatgcatatctaaaattgaatcatatatatcgctaccgaatttttacaacattgtctcacatttt 11767749  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagatta 247  Q
    ||| |||||||  |||||||||||||||| | |||| ||||||||||||||| ||| | ||| |||||| |||  |||| ||||| | ||||     |||    
T  11767750 tactcttcatctttttctaggatacgtatctctgaagtatcttataagtatctttg-tatatttgtggagtatcgtataagtatccgttaaattttttta 11767848  T
Q  248 aaat--ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||  || |||||||||||| ||||||||||||||| ||||||||| ||||||| | |||||||||||| |||||||    
T  11767849 aaataatttaaataattaattttgatacttcgtgggtgcgtatccgcgagtatccgtaaagtatcggtatccgatacg 11767926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 44 - 323
Target Start/End: Complemental strand, 40694054 - 40693772
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| |||||||||||  |||||||| |||||||| || |||| ||||||||| ||||| || |||||||   || | ||||||||||||||||||||||    
T  40694054 aagtataattttaagtgtttcatcgaaaaacaattctattgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcac 40693955  T
Q  144 tttcttac-ccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaa 241  Q
    ||| |||| |||||||  ||| |||| |||||| | |||||| ||||||| |||||| ||||| ||||| ||||| |||   ||| ||||| |||||||     
T  40693954 ttttttactccttcatatttttctagaatacgtttctgtgaagtatcttagaagtattcttgt-gtatccgtggagtatcacatatgtatccgataaaat 40693856  T
Q  242 ag--attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    |   ||||||| |||||||||||||||   ||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||    
T  40693855 atttattaaaaattaaaataattaattccaatacttcgtggatacgtatccgcgagtatccgtggagtatcggtatccgatacg 40693772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 323
Target Start/End: Complemental strand, 17116378 - 17116090
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  |||||||| ||| |||| || |||| ||||||||||||||| || ||||||| | ||   ||||||||||||||| |    
T  17116378 acaagaagtataattttaagtgtttcatcgaaaaataattctattgatgcatatctaaaattgagtcatatacatctataaagaatttttacaacattat 17116279  T
Q  139 ctcactttcttacccttcatc-atttctagg--atacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcaga 235  Q
    |||||||| |||| |||||||  ||||||||  |||||| | |||||| ||||||| |||||| |||| |||||||||||| |||    || ||||| ||    
T  17116278 ctcacttttttactcttcatctttttctaggatatacgtgtatgtgaagtatcttagaagtattcttg-tgtatctgtggagtatcacctaagtatccga 17116180  T
Q  236 taaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||||| |   | ||||| |||||||||||||||  |||||||||||| |||||| |||| ||||||| |||||||||||||| |||||||    
T  17116179 taaaatatttaataaaaattaaaataattaattccgatacttcgtggatacgtacccgcgagtatccgtgaagtatcggtatccgatacg 17116090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 39 - 291
Target Start/End: Complemental strand, 13558610 - 13558358
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||||||  ||| | ||| |||||||||||||    
T  13558610 acaagaagtataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgt 13558511  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| |||||||  ||| |||||||| ||| |||||| |||| ||||| |||||||| |||||||| ||| |||  |||| ||||| | ||    
T  13558510 ctcacttttttactcttcatctttttttaggatacatatatgtgaagtatc-tataattatccttg-tgtatctgcggagtatcgtataagtatccgtta 13558413  T
Q  238 aaaaagatt-aaaatttaaaataattaattatgatacttcgtgggtacgtatccg 291  Q
    || |   || |||| || ||||||||||||  |||||||||||| | ||||||||    
T  13558412 aatatttttaaaaaatttaaataattaattccgatacttcgtggatgcgtatccg 13558358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 298
Target Start/End: Original strand, 4973086 - 4973337
Alignment:
Q  51 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 150  Q
    ||||||||| |||||||||||||||||| ||| |||  |||||||||||||| || |||| || || ||| ||||||||||| ||||||||||||| ||     
T  4973086 attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaatttttacaatattgtctcactttattg 4973185  T
Q  151 cccttca---tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa---ga 244  Q
    |||||||   |  |||||||||||| ||| ||| || ||||||||||||||| ||| ||||| |||||| |||  |||| ||||| ||||||| |         
T  4973186 cccttcatttttttttctaggatacatatatgtaaagtatcttataagtatctttg-tgtatttgtggagtatcatataagtatctgataaaatattttt 4973284  T
Q  245 ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtat 298  Q
    ||||||||| |||||||||||| | ||| ||||||||||||||||||| |||||    
T  4973285 ttaaaattt-aaataattaattctcatatttcgtgggtacgtatccgcgagtat 4973337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 16122912 - 16122756
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||| | | || ||| |||||||||||||||    
T  16122912 aagtgtaatttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaacattgtctcac 16122814  T
Q  144 tttcttacccttcatcattt---ctaggatacgtatttgtgaaatatcttataagtat 198  Q
    ||| |||||||||||  |||   ||| ||||||||| |||||| ||||||||||||||    
T  16122813 ttttttacccttcattttttgtcctatgatacgtatatgtgaagtatcttataagtat 16122756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 51 - 292
Target Start/End: Complemental strand, 4966800 - 4966555
Alignment:
Q  51 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 150  Q
    ||||||||| |||||||||||||||||| ||| |||  |||||||||||||| || |||| || | || | || |||||||| ||||||||||||| |||    
T  4966800 attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctatagtgaa-ttttacaatattgtctcactttatta 4966702  T
Q  151 cccttca--tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa-----g 243  Q
    |||||||  |  |||||||||||| ||| ||| || ||||||||||||||||||| ||||| |||||| |||  |||| ||||| ||||||  |          
T  4966701 cccttcattttttttctaggatacatatatgtaaagtatcttataagtatccttg-tgtatttgtggagtatcatataagtatccgataaattatttttt 4966603  T
Q  244 attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgc 292  Q
     ||||||||| |||||||||||| | |||||||||||||||||||||||    
T  4966602 tttaaaattt-aaataattaattctcatacttcgtgggtacgtatccgc 4966555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 38682926 - 38683077
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||| |||||||||||||| || |||| ||||||||||||||| || ||||||| || |||||||| |||||||||| | ||| ||| |    
T  38682926 taattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctccactaaattgttacaacattatttcatttttt 38683025  T
Q  149 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatc 199  Q
    |||||||||||  |||||||||||| ||| |||||| ||| ||| |||||||    
T  38683026 tacccttcatctttttctaggatacatatctgtgaagtattttagaagtatc 38683077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 271050 - 270896
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    |||||||||||  ||||| |||||| |||| |||||||  |||||||||||||| || |||| || || |   |||||| |||||||||||| || || |    
T  271050 taattttaagtgattcatagagaaagaattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaacattgtcttacctt-t 270952  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    || |||||||| |||||| ||| || |||||||||||||||||||||||| |||||    
T  270951 tatccttcatcttttctaagatgcgcatttgtgaaatatcttataagtattcttgt 270896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 204
Target Start/End: Complemental strand, 10443657 - 10443528
Alignment:
Q  75 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgt 174  Q
    |||| |||||||  |||||||||||||| || ||||||| ||||||  |||| ||||||||| ||||||||| |||  ||||||| |||||||||||| |    
T  10443657 aattctactgatgaatatctaaaattgaatcatatacatctctactggatttctacaacattctctcacttttttatacttcatcttttctaggatacat 10443558  T
Q  175 atttgtgaaatatcttataagtatccttgt 204  Q
    || ||| || ||||||  ||||||||||||    
T  10443557 atatgtaaagtatcttggaagtatccttgt 10443528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 50726780 - 50726663
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||   ||||||||||||||||| || |||  ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  50726780 acaagaagtataattttaagcgtttcatcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 50726681  T
Q  139 ctcactttcttacccttc 156  Q
    |||||||| |||| ||||    
T  50726680 ctcacttttttactcttc 50726663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 13643894 - 13643778
Alignment:
Q  88 catatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttc-taggatacgtatttgtgaaata 186  Q
    ||||||||||||||| || ||||||| |||| | |||||||||||| |||||||||||| || ||||||||| |||| || ||||||| | |||||| ||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcacttt-tttcccttcatcttttcttatgatacgtgtatgtgaagta 13643796  T
Q  187 tcttataagtatccttgt 204  Q
     |||| ||||||||||||    
T  13643795 ccttacaagtatccttgt 13643778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 330
Target Start/End: Original strand, 30902574 - 30902651
Alignment:
Q  253 taaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgt 330  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||  |||||| || |||| ||||||| ||||||    
T  30902574 taaaataattaattctgatactttgtgggtacgtatccgcgagtatctgtgaagtttctgtatccgatacgtgtacgt 30902651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 321
Target Start/End: Original strand, 51898929 - 51899213
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| ||||||||||||  || |||||||||||||||||| ||  | | ||| ||||||||  | || |||||||||  ||  |||||| ||||| ||||    
T  51898929 acaagaagtgtaattttcggtggttcatcgagaaacaattatatcggtgcatgtctaaaataaaatcatatacattttcaccgaattttcacaactttgt 51899028  T
Q  139 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 238  Q
    |||  ||| ||| ||| |||| ||  || ||||| ||||| |||||||||||||||| |||||||  ||||||||||| |||  || | | ||| |||||    
T  51899029 ctccgtttttta-cctacatctttgataagatacatatttttgaaatatcttataagcatccttg-cgtatctgtggagtatcatacaagcatccgataa 51899126  T
Q  239 aaaaga----ttaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgata 321  Q
    || | |    ||  || ||||||||| ||||| |||||||||||||||| |||||| | ||||||| |||| ||||| ||| |||||    
T  51899127 aatatatattttttaaattaaaataagtaattctgatacttcgtgggtatgtatccacgagtatccctgaaatatcgatatccgata 51899213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 346
Target Start/End: Original strand, 17936410 - 17936504
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtat 346  Q
    |||||||||||||||  |||||| ||||||||||||| ||  |||||||  | ||||||| |||  ||||||||||||| ||||||||| |||||    
T  17936410 ttaaaataattaattccgatactccgtgggtacgtattcgagagtatccgcggagtatcgatatctgatacgggtacgtctccattttggagtat 17936504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 355
Target Start/End: Complemental strand, 40032628 - 40032453
Alignment:
Q  185 tatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggt 282  Q
    ||||||| ||||||||||| | |||||||||| |||  |||| ||||| ||||||| |    |||||| |||||||||| ||||  ||||||||||||||    
T  40032628 tatcttagaagtatccttg-tatatctgtggagtatcatataagtatctgataaaatattttttaaaaattaaaataataaattccgatacttcgtgggt 40032530  T
Q  283 ac----gtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcggacttc 355  Q
    ||    ||||| || ||||||| || ||||||||||| |||||| |||| || ||| ||||| ||||| || |||||    
T  40032529 acatatgtatctgcgagtatccgtggagtatcggtatccgatacaggtatgtctccgttttgaagtatccgaacttc 40032453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 50727163 - 50727123
Alignment:
Q  252 ttaaaataattaattatgatacttcgtgggtacgtatccgc 292  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  50727163 ttaaaataattaattatgatacttcgtggatacgtatccgc 50727123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 29488301 - 29488210
Alignment:
Q  107 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 198  Q
    ||||||| || |||||||||| ||||||  |||||||||| |  ||||||||  |||| |||||||||||  ||||| ||||||||||||||    
T  29488301 tatacatctccactaaattttcacaacaaagtctcactttttcccccttcattttttccaggatacgtatcagtgaagtatcttataagtat 29488210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 10443508 - 10443401
Alignment:
Q  192 taagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagatta-aaatttaaaataattaattatgatacttcgtgggtacgtatcc 290  Q
    |||||||||| || |||||| || ||||| ||||| |||| |||||||| |  ||  ||| |||||||||||||||  ||||||| ||||||||||||||    
T  10443508 taagtatcctcgt-gtatctatgaaatatcctataagtattagataaaatattttttaaaattaaaataattaattccgatactttgtgggtacgtatcc 10443410  T
Q  291 gcaagtatc 299  Q
    || ||||||    
T  10443409 gcgagtatc 10443401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 50709630 - 50709492
Alignment:
Q  65 atcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca-ctttcttacccttcatcattt 163  Q
    ||||| |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| |||||| |||||||  ||| |||| ||||||  |||    
T  50709630 atcgaaaaacaattataatgattcatatcttaaattgaatcatatacatctccattgaattttcacaacactgtctcattttttttacacttcatttttt 50709531  T
Q  164 ct---aggatacgtatttgtgaaatatcttataagtatc 199  Q
     |   ||||||||| | ||| ||||||||||||||||||    
T  50709530 ttttcaggatacgtctctgtaaaatatcttataagtatc 50709492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 46594245 - 46594324
Alignment:
Q  63 tcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 142  Q
    ||||||| |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| ||||||| ||||||    
T  46594245 tcatcgaaaaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcacaacatagtctca 46594324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 290
Target Start/End: Original strand, 22791116 - 22791338
Alignment:
Q  71 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca-ctttcttacccttca-tcatttctagg 168  Q
    |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| ||||||  ||||||  ||| |||| ||||| |  |||| |||    
T  22791116 aaacaattgtagtgattcatatcttaaattgaatcatatacatatccattgaattttcacaacacagtctcattttttttacacttcatttttttccagg 22791215  T
Q  169 atacgtatttgtgaaatatcttataagtatccttgt-tgtatctgtggaatattctatacgtatcagataaa--aaagattaaaatttaaaataattaat 265  Q
    |||||| |||||||| || |||||||||||  |||| ||||| ||| || |||  |||| ||||| ||||||  | | |||  || ||||||||||||||    
T  22791216 atacgtctttgtgaagtaacttataagtat--ttgtgtgtatttgtcgagtatcttataagtatccgataaaatatacattttaaattaaaataattaat 22791313  T
Q  266 tatgatacttcgtgggtacgtatcc 290  Q
    |  ||||||  ||||||||||||||    
T  22791314 ttcgatactctgtgggtacgtatcc 22791338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 41827709 - 41827628
Alignment:
Q  139 ctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatat 220  Q
    |||||||| |||| ||||||| ||| |||| |||||| | |||||| ||||||| ||||||||||| |||||||| |||||||    
T  41827709 ctcacttttttactcttcatctttttctagaatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgcggaatat 41827628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 781937 - 781814
Alignment:
Q  80 tactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttg 179  Q
    ||||| ||||||||||||||||| || ||||||| |  | | |||||| ||||||||||||||  || ||| | |||||| || |||| |||  ||| ||    
T  781937 tactgtttcatatctaaaattgaatcatatacatattcattgaattttcacaacattgtctcaaatttttaactttcatctttcctagtataattatctg 781838  T
Q  180 tgaa--atatcttataagtatcct 201  Q
    ||||  ||||||||||| ||||||    
T  781837 tgaagtatatcttataaatatcct 781814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 22791367 - 22791407
Alignment:
Q  318 gatacgggtacgtttccattttgcagtattcggacttcata 358  Q
    ||||||||||||| ||||||||| ||||| |||||||||||    
T  22791367 gatacgggtacgtctccattttggagtatccggacttcata 22791407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 50726584 - 50726540
Alignment:
Q  244 attaaaatttaaaataattaattatgatacttcgtgggtacgtat 288  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||    
T  50726584 attaaaaattaaaataattaattccgatacttcgtggatacgtat 50726540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 49 - 322
Target Start/End: Complemental strand, 7057218 - 7056947
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||| ||||  ||| || ||||||| |||||| ||||| ||||||||||||||||||| |    
T  7057218 taattttaagttgttcatcgagacacaattatactgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcacttt-t 7057120  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gatt 246  Q
    ||||||||||  |||||||||||| ||| ||||||  |||||||||||||||||| ||||||| |||| ||| ||||| ||||||||||||| |    ||    
T  7057119 tacccttcat-ttttctaggatacatatatgtgaagcatcttataagtatccttg-tgtatctatggagtatcctataagtatcagataaaatatttttt 7057022  T
Q  247 aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
    |||| ||||||| |||||||  |||||||||||||||||||| | | ||||||| |  ||||||||||| ||||||    
T  7057021 aaaaattaaaat-attaatttcgatacttcgtgggtacgtattcacgagtatccgtagagtatcggtatccgatac 7056947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 39 - 323
Target Start/End: Original strand, 29231072 - 29231358
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  29231072 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 29231171  T
Q  139 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||  |||||||  |||||||||||||| | |||||| ||||||| || |||||||| ||||| |||||| |||   ||| ||||| ||||    
T  29231172 ctcacttttttagtcttcatctttttctaggatacgtgtctgtgaagtatcttaaaaatatccttg-tgtatatgtggagtatcacataagtatccgata 29231270  T
Q  238 aaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    ||| |   ||||||| |||||||||||||||  |||||||| ||| |||||||| || | ||||| || ||||||||||| |||||||    
T  29231271 aaatatttattaaaaattaaaataattaattccgatacttcttggatacgtatctgcgaatatccgtggagtatcggtatccgatacg 29231358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 38 - 359
Target Start/End: Complemental strand, 3387409 - 3387087
Alignment:
Q  38 tacaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 137  Q
    ||||| |||| ||| ||||||| |||||| ||||||||||| || |||| ||||  |||||||||    || || | |||||| ||||||||||||||||    
T  3387409 tacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctctactgaatttttacaacattg 3387310  T
Q  138 tctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||  |||||||||||||  ||| |||||| ||| | |||  |||| ||||  ||||    
T  3387309 tctcacttttttacccttcatcttttctaggatacgtatttgcgaagcatcttataagtatttttg-tgtatccgtgaagtatcttatatgtatttgata 3387211  T
Q  238 aaaaagatt--aaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||  |  ||  |||| ||||||||||||||| |||||||||||||||| |||||||| | ||||  || ||||||||||| |||||  ||||| |  |||    
T  3387210 aattatttttcaaaaattaaaataattaattttgatacttcgtgggtatgtatccgcgaatatctttggagtatcggtatccgatataggtacatcacca 3387111  T
Q  336 ttttgcagtattcggacttcatag 359  Q
    ||||| ||||| ||| | ||||||    
T  3387110 ttttggagtatccgggcctcatag 3387087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 136 - 359
Target Start/End: Original strand, 19100124 - 19100349
Alignment:
Q  136 tgtctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcag 234  Q
    ||||||||||| |||| ||| ||| ||| ||||||||||||| |||||| ||||||| |||||||||||| |||| |||||| |||   ||| ||||| |    
T  19100124 tgtctcacttttttactctttatctttttctaggatacgtatctgtgaagtatcttagaagtatccttgt-gtatatgtggagtatcacataagtatccg 19100222  T
Q  235 ataaaaaag--attaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgttt 332  Q
    |||||| |   ||||||| |||||||||||||||   ||||||||| ||||| ||||||| ||||||| |||||||||||||| |||||||||||||| |    
T  19100223 ataaaatatttattaaaaattaaaataattaatttcaatacttcgtaggtacatatccgcgagtatccgtgaagtatcggtatccgatacgggtacgtct 19100322  T
Q  333 ccattttgcagtattcggacttcatag 359  Q
    |||||||| ||||| | | ||||||||    
T  19100323 ccattttggagtatccaggcttcatag 19100349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 13407260 - 13407420
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||| | |||||||||||||||||| |||||||  |||||||||||||| || ||||  |||||||| ||||| |||||||||||||||     
T  13407260 aagtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatataagtttctactgaatttctacaacattgtctcaa 13407359  T
Q  144 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| ||  |||||||| ||||||||||||||||||||||  |||||||||| ||| |||||    
T  13407360 ttttttctccttcatcttttctaggatacgtatttgtgacgtatcttataaatattcttgt 13407420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 2627962 - 2628124
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| ||||||||| |||||||| || | || ||||||||||||||| || ||||||| |||||| ||| ||||||||| ||||||||    
T  2627962 aagtataattttaagtggttcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcac 2628061  T
Q  144 tttcttacccttcatc--atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| |||| |||||||   |||||||||||| ||| |||||| ||||||||||||| ||||||    
T  2628062 ttttttactcttcatcttttttctaggatacatatatgtgaagtatcttataagtaaccttgt 2628124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 204
Target Start/End: Complemental strand, 27925673 - 27925522
Alignment:
Q  53 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 152  Q
    ||||||| |||||||||||||||||| |||||||  |||||||||||||| || || | || ||| || ||||| ||||||||||||||| ||| ||||     
T  27925673 tttaagtggttcatcgagaaacaattctactgatgaatatctaaaattgaatcatagatatctctgctgaatttctacaacattgtctcatttttttaca 27925574  T
Q  153 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||||| |||||||||||||||| |||||| |||||| ||||| |||||||    
T  27925573 cttcatcttttctaggatacgtatatgtgaagtatcttgtaagtgtccttgt 27925522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 360
Target Start/End: Original strand, 31113980 - 31114314
Alignment:
Q  27 ttacccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatt 125  Q
    |||||||||||  |||| |||| ||||||||||| ||||| || |||||||||||||| || ||||||||||||||| || ||||||| ||| || ||||    
T  31113980 ttacccttcatccacaagaagtataattttaagtggttcaccgtgaaacaattttactaatgcatatctaaaattgaatcatatacatctctccttaatt 31114079  T
Q  126 tttacaacattgtctcactttcttacccttca-tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattcta 224  Q
    |||  || ||||||||||||| |||||||||| |  ||||||||||||  || || ||| |||||||||||||||  || ||||| | || | |||| ||    
T  31114080 ttt--aatattgtctcacttttttacccttcatttttttctaggatacacatatgcgaagtatcttataagtatcaatg-tgtatttttgaagtattata 31114176  T
Q  225 tacgtatcagataaaaaa--gattaaaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
    || ||||| ||||| | |    |||||| ||||||||||||||| ||||||||  ||| |||| |||||| ||||| | |  |||||| |||| ||||||    
T  31114177 taagtatctgataatatattttttaaaaattaaaataattaattctgatactttatggatacgcatccgcgagtatgcgtagagtatcagtatccgatac 31114276  T
Q  323 gggtacgtttccattttgcagtattcggacttcatagg 360  Q
    ||||| || ||  ||||| ||||| ||| |||||||||    
T  31114277 gggtatgtctcagttttggagtatccgggcttcatagg 31114314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 42 - 204
Target Start/End: Complemental strand, 26565080 - 26564917
Alignment:
Q  42 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 141  Q
    |||||| ||||||||||| ||| ||| |||||||||| || |||| ||||||||||||||| || |||||||| ||| | ||| ||||||||||| ||||    
T  26565080 ataagtataattttaagtggtttatcaagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctc 26564981  T
Q  142 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||||| |||| |||||||  |||||||||||  ||| | |||| ||||||||||||||| ||||    
T  26564980 acttttttactcttcatctttttctaggatagatatctttgaagtatcttataagtatctttgt 26564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 5836627 - 5836480
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| |||||||||||||||||| ||| ||| ||||| ||||||||| || ||||||| |  ||| |||||| ||||||||||||||| ||      
T  5836627 taattttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaacattgtctcacctttg 5836528  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagt 196  Q
     |||||||||  ||||||| |||||||| | |||| ||||||||||||    
T  5836527 cacccttcatattttctagaatacgtatctctgaagtatcttataagt 5836480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 32076531 - 32076658
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||| ||||||| |||  |||||||||||||||| |||| |||||||||||||||    || |||| |||||| || ||||||||||||||    
T  32076531 acaagaagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgt 32076630  T
Q  139 ctcactttcttacccttcatcatttcta 166  Q
    |||||||| |||||||||||| ||||||    
T  32076631 ctcacttttttacccttcatcttttcta 32076658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 322
Target Start/End: Complemental strand, 39935734 - 39935459
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||| ||||||| ||| |||||||||||| | || ||||  ||||||||||||||  | |||     |||| | ||||||||||||||||||||||    
T  39935734 aagtataaatttaagtggtttatcgagaaacaactctaatgatgtatatctaaaattgaaccatatc----tctaatgaatttttacaacattgtctcac 39935639  T
Q  144 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaag 243  Q
    ||| ||| | |||||| ||||||| |||| ||| | | || ||||||||||||||| |||| |||| ||| || |||| |||| ||||| ||||||| |     
T  39935638 ttttttatctttcatcttttctagcatacatatctat-aagtatcttataagtatctttgt-gtatatgtagagtattttatatgtatccgataaaatat 39935541  T
Q  244 attaa---aatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatac 322  Q
     ||     || ||||||||||||||||||||||||||||  ||||||||||| ||||||| || | ||||| ||| ||||||    
T  39935540 ttttttttaaattaaaataattaattatgatacttcgtgaatacgtatccgcgagtatccgtggaatatcgatatccgatac 39935459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 44 - 204
Target Start/End: Complemental strand, 34510965 - 34510804
Alignment:
Q  44 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 143  Q
    |||| ||||||||||| ||||||||| ||||||| ||| | || |||||||||| || | || ||||||| |||| | | | ||||||| ||| ||||||    
T  34510965 aagtataattttaagtggttcatcgaaaaacaatgttagttatgcatatctaaatttaaatcatatacatctctattgagtgtttacaatattatctcac 34510866  T
Q  144 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 204  Q
    ||| |||| |||||||  |||||| ||||||||| | |||| ||||||||||||||||||||    
T  34510865 ttttttactcttcatctttttctacgatacgtatctctgaagtatcttataagtatccttgt 34510804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 31210891 - 31211010
Alignment:
Q  75 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgt 174  Q
    |||| ||||||| ||| | ||||||| | || |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||  |||||| ||||| |    
T  31210891 aattctactgatgcatgtttaaaattaaatcatatacatttctactgaatttttacaacactgtctcatttttttacccttcatattttctaagatacat 31210990  T
Q  175 atttgtgaaatatcttataa 194  Q
    || |||||| ||||||||||    
T  31210991 atctgtgaagtatcttataa 31211010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 16756081 - 16756231
Alignment:
Q  49 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 148  Q
    ||||||||||| ||  ||||| ||||||||||||| || ||||||||||||||| || ||||||| ||   | || |||  ||||||||||||||||| |    
T  16756081 taattttaagtggtcaatcgataaacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtctcacttttt 16756180  T
Q  149 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 199  Q
    |  |||||||  |||||||||||| |||  || ||||||||||||||||||    
T  16756181 tgtccttcatattttctaggatacatatacgtaaaatatcttataagtatc 16756231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 359
Target Start/End: Original strand, 34764723 - 34764905
Alignment:
Q  177 ttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagatt---aaaatttaaaataattaattatgatac 273  Q
    ||||||| || ||||||||||||||||| |||| |||||| |||  |||| ||||  ||||||| |  ||   |||||||||| ||||||||| ||||||    
T  34764723 ttgtgaagtaccttataagtatccttgt-gtatttgtggagtatcatataagtattcgataaaatatttttttaaaatttaaa-taattaattctgatac 34764820  T
Q  274 ttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttccattttgcagtattcggacttcatag 359  Q
    ||||||||| ||||||||| ||||||| || ||||| ||||  |||||||||||||| ||  ||||| ||||| ||| ||||||||    
T  34764821 ttcgtgggtgcgtatccgcgagtatccgtggagtattggtagccgatacgggtacgtctctgttttg-agtatccgggcttcatag 34764905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 193
Target Start/End: Complemental strand, 41368733 - 41368580
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||| ||| ||||||| ||||||| ||  || ||| ||||||||||||||| |    ||||||||  || |||||| |||| |||||    
T  41368733 acaaaaagtataatttttagtggttcatcaagaaacatttacaccgatgcatatctaaaattgaataacgtacatttcg-ctgaattttcacaagattgt 41368635  T
Q  139 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttata 193  Q
    |||||||| ||||| |||||| ||||||||||| |||||||| |||||| |||||    
T  41368634 ctcacttttttacctttcatcttttctaggatatgtatttgtaaaatattttata 41368580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 8229407 - 8229316
Alignment:
Q  51 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 142  Q
    |||||||||  ||||| ||||||||||| || |||| ||||||||||| | | || ||||||| |||| | ||| |||||||||||||||||    
T  8229407 attttaagtgattcattgagaaacaattctagtgatgcatatctaaaactaaatcatatacatctctattgaatgtttacaacattgtctca 8229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 12118426 - 12118286
Alignment:
Q  52 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 151  Q
    |||||| ||||| ||||| ||||| || ||||||||||||||| ||||||| || |||||||||  | | |||||| ||||||     ||||||| ||||    
T  12118426 ttttaattagttaatcgaaaaacagttatactgattcatatcttaaattgaatcatatacattttcattgaattttcacaaca--cattcacttttttac 12118329  T
Q  152 ccttcatcatttctaggatacgtatttgtgaaatatcttataa 194  Q
    |||||||  |||| ||||||||||| ||| || ||| ||||||    
T  12118328 ccttcattttttccaggatacgtatctgtaaagtatattataa 12118286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 42990778 - 42990547
Alignment:
Q  72 aacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctt-acccttcatcatt-tctagga 169  Q
    ||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| ||||||  |||||| ||| || || ||||||  || || ||||    
T  42990778 aacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcacaacacagtctcattttttttacacttcatttttgtccagga 42990679  T
Q  170 tacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaagat--taaaatttaaaataattaatta 267  Q
    ||||| | ||| || |||||||||||||||  ||| |||||||| || |||  |||| |||||  |||||| | ||  |  || |||||||||||||||     
T  42990678 tacgtctctgtaaagtatcttataagtatctgtgt-gtatctgtcgagtatcttataagtatccaataaaatatatattttaaattaaaataattaattc 42990580  T
Q  268 tgatacttcgtgggtacgtatccgcaagtatcc 300  Q
    |||| |||| ||| |||||||||| ||||||||    
T  42990579 tgattcttcatggatacgtatccgaaagtatcc 42990547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 32076657 - 32076714
Alignment:
Q  258 taattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtat 315  Q
    ||||||||| ||||| || |||||||||||||||| | ||||| | ||||||||||||    
T  32076657 taattaattctgatattttgtgggtacgtatccgcgaatatccttaaagtatcggtat 32076714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 359
Target Start/End: Complemental strand, 6288 - 5969
Alignment:
Q  39 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 138  Q
    |||| |||| ||||||||||| ||||||| | |||||||| || | || |||||||| |||||| || ||||||| ||||   ||| ||| |||||||||    
T  6288 acaagaagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgt 6189  T
Q  139 ctcactttcttacccttcatcatttcta-ggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 237  Q
    |||||||| |||| ||||||| |||  | |||||||||| |||||||||||| |||||| | ||||| ||||| |  ||  ||  |||| |||||   ||    
T  6188 ctcacttttttactcttcatctttttgaaggatacgtatatgtgaaatatct-ataagtgttcttgt-gtatccgcagagaatcgtataagtatccatta 6091  T
Q  238 aaaaagatta--aaatttaaaataattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacgggtacgtttcca 335  Q
    ||| |  ||   ||||||||  ||||||||| ||||||||||||||| ||||||||| | ||| | || |||||||||||  ||||||||||||| |||     
T  6090 aaatatttttttaaatttaa--taattaattctgatacttcgtgggtgcgtatccgcgaatatacgtggagtatcggtatctgatacgggtacgtctccg 5993  T
Q  336 ttttgcagtattcggacttcatag 359  Q
    ||||| ||||| | ||||||||||    
T  5992 ttttgaagtatccagacttcatag 5969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 10106 - 10046
Alignment:
Q  129 acaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatct 189  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||| || |||||| |||||    
T  10106 acaacattgtctcacttttttaccctttatattttctaggatacgcatctgtgaagtatct 10046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 38481 - 38523
Alignment:
Q  245 ttaaaatttaaaataattaattatgatacttcgtgggtacgta 287  Q
    |||||| |||||||||||||||  |||||||||||||||||||    
T  38481 ttaaaaattaaaataattaatttcgatacttcgtgggtacgta 38523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 53716 - 53652
Alignment:
Q  259 aattaattatgatacttcgtgggtacgtatccgcaagtatccatgaagtatcggtattcgatacg 323  Q
    |||||||| |||||||| |||||||||||||||  |||||||  | |||||| | ||||||||||    
T  53716 aattaattctgatactttgtgggtacgtatccgagagtatccgcggagtatcagaattcgatacg 53652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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