View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5922_high_6 (Length: 322)

Name: NF5922_high_6
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5922_high_6
NF5922_high_6
[»] chr3 (31 HSPs)
chr3 (6-322)||(52203477-52203776)
chr3 (173-309)||(45472804-45472942)
chr3 (155-307)||(7628816-7628969)
chr3 (190-309)||(27163755-27163876)
chr3 (67-136)||(52203459-52203528)
chr3 (210-285)||(43472053-43472127)
chr3 (211-319)||(36505017-36505127)
chr3 (220-319)||(38489559-38489654)
chr3 (157-283)||(46978982-46979107)
chr3 (183-285)||(21854054-21854156)
chr3 (190-285)||(21858549-21858644)
chr3 (155-285)||(52695221-52695351)
chr3 (208-285)||(12176452-12176528)
chr3 (179-312)||(51240618-51240752)
chr3 (219-278)||(21842915-21842974)
chr3 (210-285)||(36171907-36171981)
chr3 (220-285)||(2111721-2111785)
chr3 (225-265)||(17063819-17063859)
chr3 (217-285)||(35433585-35433652)
chr3 (226-312)||(20368965-20369054)
chr3 (183-319)||(29324413-29324551)
chr3 (211-285)||(16343248-16343321)
chr3 (216-278)||(47014725-47014787)
chr3 (220-285)||(2119214-2119279)
chr3 (247-321)||(20178762-20178838)
chr3 (190-306)||(31489175-31489292)
chr3 (241-285)||(24121416-24121460)
chr3 (175-285)||(12736808-12736915)
chr3 (221-263)||(49508045-49508087)
chr3 (201-266)||(10224169-10224234)
chr3 (216-272)||(22610311-22610367)
[»] chr8 (22 HSPs)
chr8 (153-319)||(23877122-23877289)
chr8 (155-285)||(17748432-17748558)
chr8 (156-285)||(11789003-11789130)
chr8 (183-285)||(2813419-2813521)
chr8 (174-307)||(16591071-16591203)
chr8 (174-309)||(24728192-24728328)
chr8 (210-285)||(37232148-37232223)
chr8 (155-307)||(9410211-9410366)
chr8 (185-312)||(31430981-31431110)
chr8 (235-309)||(13003587-13003663)
chr8 (203-285)||(12007077-12007159)
chr8 (191-272)||(39296614-39296695)
chr8 (221-309)||(11755405-11755495)
chr8 (174-285)||(14180468-14180579)
chr8 (219-285)||(9136405-9136471)
chr8 (210-279)||(24888449-24888518)
chr8 (225-309)||(32856224-32856309)
chr8 (191-264)||(31332273-31332346)
chr8 (234-267)||(32425396-32425429)
chr8 (201-266)||(36484458-36484523)
chr8 (181-253)||(11991101-11991173)
chr8 (216-272)||(13422647-13422703)
[»] chr2 (19 HSPs)
chr2 (158-321)||(36467474-36467637)
chr2 (220-309)||(40364016-40364107)
chr2 (173-309)||(35306432-35306570)
chr2 (154-309)||(7018166-7018323)
chr2 (210-309)||(40498828-40498928)
chr2 (175-312)||(26352934-26353070)
chr2 (214-286)||(8948347-8948419)
chr2 (175-285)||(36925885-36925993)
chr2 (220-309)||(5591051-5591142)
chr2 (179-312)||(38595719-38595853)
chr2 (190-278)||(43344555-43344642)
chr2 (210-284)||(14749645-14749718)
chr2 (167-309)||(17329059-17329207)
chr2 (185-320)||(30382465-30382601)
chr2 (220-322)||(41324223-41324324)
chr2 (175-285)||(3353485-3353595)
chr2 (173-285)||(11458169-11458280)
chr2 (165-283)||(38141972-38142082)
chr2 (235-307)||(37272614-37272689)
[»] chr4 (35 HSPs)
chr4 (155-307)||(19721333-19721486)
chr4 (187-307)||(53586595-53586716)
chr4 (184-319)||(6008400-6008537)
chr4 (184-285)||(34072678-34072778)
chr4 (220-309)||(40217904-40217995)
chr4 (208-312)||(22198549-22198655)
chr4 (187-285)||(38947541-38947638)
chr4 (173-268)||(2295755-2295850)
chr4 (215-286)||(54163089-54163162)
chr4 (203-280)||(42399349-42399426)
chr4 (220-285)||(47724571-47724635)
chr4 (214-272)||(6332305-6332363)
chr4 (225-279)||(47922699-47922753)
chr4 (224-309)||(25059081-25059166)
chr4 (181-266)||(49195925-49196010)
chr4 (250-285)||(1052556-1052591)
chr4 (220-312)||(28101696-28101790)
chr4 (155-307)||(45774347-45774500)
chr4 (227-306)||(15476442-15476522)
chr4 (250-309)||(22588344-22588405)
chr4 (181-275)||(44746772-44746866)
chr4 (174-307)||(2242523-2242661)
chr4 (225-309)||(7208217-7208304)
chr4 (247-312)||(44987611-44987678)
chr4 (246-307)||(45662010-45662073)
chr4 (251-282)||(1052522-1052553)
chr4 (210-285)||(43770273-43770348)
chr4 (221-312)||(4776091-4776184)
chr4 (220-286)||(25204311-25204377)
chr4 (223-280)||(9656188-9656245)
chr4 (201-266)||(24784965-24785030)
chr4 (201-266)||(24823236-24823301)
chr4 (201-266)||(42630014-42630079)
chr4 (210-266)||(49470782-49470838)
chr4 (250-307)||(53018290-53018349)
[»] chr6 (10 HSPs)
chr6 (168-285)||(8486307-8486423)
chr6 (155-309)||(7435026-7435183)
chr6 (220-309)||(2987953-2988044)
chr6 (154-307)||(2031977-2032130)
chr6 (220-309)||(10229652-10229743)
chr6 (155-284)||(22296979-22297113)
chr6 (203-285)||(1929255-1929336)
chr6 (221-322)||(30928577-30928680)
chr6 (192-285)||(17533111-17533203)
chr6 (220-283)||(12283466-12283529)
[»] chr1 (28 HSPs)
chr1 (155-312)||(10443771-10443930)
chr1 (183-285)||(22790805-22790906)
chr1 (214-285)||(31183818-31183889)
chr1 (156-307)||(31513254-31513406)
chr1 (183-285)||(50709816-50709917)
chr1 (167-320)||(41828003-41828152)
chr1 (154-320)||(2137133-2137300)
chr1 (220-309)||(11767469-11767560)
chr1 (161-285)||(17116623-17116746)
chr1 (156-275)||(13558703-13558821)
chr1 (183-285)||(46593940-46594041)
chr1 (192-285)||(30193732-30193824)
chr1 (220-309)||(4967030-4967120)
chr1 (183-285)||(17936092-17936193)
chr1 (220-307)||(25294327-25294415)
chr1 (220-285)||(4972762-4972827)
chr1 (218-285)||(9380384-9380451)
chr1 (220-285)||(49899528-49899593)
chr1 (248-284)||(13644144-13644180)
chr1 (175-263)||(51898494-51898581)
chr1 (175-274)||(29488948-29489047)
chr1 (226-308)||(14287365-14287448)
chr1 (218-285)||(42603219-42603286)
chr1 (250-309)||(38682637-38682698)
chr1 (247-284)||(35160468-35160505)
chr1 (210-266)||(28658429-28658485)
chr1 (210-266)||(38949178-38949234)
chr1 (174-278)||(46285771-46285874)
[»] chr5 (23 HSPs)
chr5 (203-319)||(2627766-2627884)
chr5 (155-307)||(19099674-19099827)
chr5 (167-319)||(8229486-8229640)
chr5 (159-309)||(31113624-31113776)
chr5 (183-309)||(34764452-34764581)
chr5 (154-309)||(13406942-13407096)
chr5 (183-285)||(39730539-39730641)
chr5 (155-285)||(39935983-39936114)
chr5 (226-312)||(7057346-7057435)
chr5 (180-282)||(26565191-26565293)
chr5 (195-285)||(39329756-39329845)
chr5 (220-285)||(16755761-16755826)
chr5 (156-285)||(32076157-32076286)
chr5 (217-310)||(36906974-36907067)
chr5 (217-285)||(7732574-7732641)
chr5 (232-286)||(8802512-8802566)
chr5 (218-312)||(27925816-27925912)
chr5 (155-239)||(29230720-29230804)
chr5 (210-272)||(18001525-18001587)
chr5 (210-268)||(42455124-42455182)
chr5 (201-266)||(26794011-26794076)
chr5 (226-279)||(31210550-31210603)
chr5 (250-307)||(29230799-29230857)
[»] chr7 (18 HSPs)
chr7 (183-285)||(40837306-40837408)
chr7 (155-320)||(43728256-43728423)
chr7 (155-307)||(42040084-42040236)
chr7 (187-285)||(43495543-43495641)
chr7 (155-309)||(25310636-25310792)
chr7 (175-309)||(22542585-22542717)
chr7 (185-285)||(48138805-48138904)
chr7 (210-285)||(9229313-9229387)
chr7 (217-287)||(44797877-44797947)
chr7 (221-309)||(48153236-48153326)
chr7 (175-264)||(46191908-46191996)
chr7 (175-282)||(47278293-47278400)
chr7 (226-308)||(45492514-45492597)
chr7 (218-285)||(24699962-24700028)
chr7 (216-266)||(3393522-3393572)
chr7 (210-272)||(21180325-21180387)
chr7 (220-307)||(45647920-45648008)
chr7 (238-307)||(7858214-7858285)
[»] scaffold0027 (1 HSPs)
scaffold0027 (180-285)||(8997-9102)
[»] scaffold0015 (1 HSPs)
scaffold0015 (210-322)||(38249-38363)
[»] scaffold0495 (1 HSPs)
scaffold0495 (218-309)||(6367-6459)
[»] scaffold0051 (1 HSPs)
scaffold0051 (203-285)||(53892-53973)
[»] scaffold0464 (1 HSPs)
scaffold0464 (175-281)||(5813-5917)
[»] scaffold0565 (1 HSPs)
scaffold0565 (173-285)||(8274-8388)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 52203477 - 52203776
Alignment:
Q  6 agaagcataggcaaaataacggaaagaagaaagtaagagaaaattaggatttcatcccaatttgcacacacagatgaaaagaaccataagcaaaataacg 105  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52203477 agaaccataagcaaaataacggaaagaagaaagtaagagaaaattaggatttcatcacaatttgcacacacagatgaaaagaaccataagcaaaataacg 52203576  T
Q  106 gaaagaagaaaataagagaaaataaggattttttatgatggatatgagcctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatac 205  Q
    ||||||||||||||||||||||| |||||||||||| |                 ||||||||||||||||||||||||| ||||||||||||| |||||    
T  52203577 gaaagaagaaaataagagaaaattaggattttttataa-----------------agcccagatacagatacgggtgcggatacgatacgatacggatac 52203659  T
Q  206 gtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatatatgtaaagcacttgaagaaa 305  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  52203660 gtgaatacgcaaattttttaaaatttaggatacgattcggctaagatacgttaacaaaaattttatactaaaacttatatatgtaaaacacttgaagaaa 52203759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 45472942 - 45472804
Alignment:
Q  173 gatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    |||||||||||| |||||||||||||| | |||| | ||| || || ||||||||||||||||||||||| |||||||||| ||||||||||  ||||||    
T  45472942 gatacgggtgcgagtacgatacgatacgggtacgcggatatgcgaattttttaaaatttaggatacgatatggctaagatatgttaacaaaatttttata 45472843  T
Q  273 ctaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
     |||||||||||  ||||||||  |||||||||||||||    
T  45472842 ttaaaacttatatgtatgtaaaatacttgaagaaaataa 45472804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 7628816 - 7628969
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| ||||| ||||||| |||| |||||||||| ||| | ||||   |||||| || ||||||||||||||||||| |||||| || |||||    
T  7628816 ctatgaagccccgatacggatacggttgcgagtacgatacggtacgggtacgcagatacgcgaattttttaaaatttaggatacaatacggttaggatac 7628915  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||| ||||||||||| | |||||||||  |||||||| ||||||||||||||    
T  7628916 gttaac-aaaaatttataattaaacttatatgtatgtaaaacacttgaagaaaat 7628969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 27163755 - 27163876
Alignment:
Q  190 gatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaact--tatatat 287  Q
    |||||||||||  || ||| ||| || |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  27163755 gatacgatacaagtatgtggataagcgaaattttttaaatttaagatacgatacggctaagatacgttaacaaaaattttatactaaaacttatatatat 27163854  T
Q  288 gtaaagcacttgaagaaaataa 309  Q
    |||||   ||||||||||||||    
T  27163855 gtaaaattcttgaagaaaataa 27163876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 52203459 - 52203528
Alignment:
Q  67 ttgcacacacagatgaaaagaaccataagcaaaataacggaaagaagaaaataagagaaaataaggattt 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  52203459 ttgcacacacagatgaaaagaaccataagcaaaataacggaaagaagaaagtaagagaaaattaggattt 52203528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 43472127 - 43472053
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  43472127 atacgcaaaatttttaaaatt-aggatacgatacggctaagatacgttaacaaaatatttatactaaaatttatat 43472053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 36505127 - 36505017
Alignment:
Q  211 tacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat--atatgtaaagcacttgaagaaaata 308  Q
    ||||| || |||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||||||||  ||| ||||||||||    
T  36505127 tacgcgaatttttcaaaatataggatacgatacgtctaagatatgttaacaaaaaatttatactaaaacttatatatatgtaaaatactcgaagaaaata 36505028  T
Q  309 agcactaatta 319  Q
    | || ||||||    
T  36505027 aacattaatta 36505017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 38489559 - 38489654
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatatatgtaaagcacttgaagaaaataagcactaatta 319  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    ||  ||||||||||||||| || ||||||    
T  38489559 ttttcaaaatttaggatacgatacggttaaaatacgttaacaaaaaatttatactaaaacttatata----aaatacttgaagaaaataaacattaatta 38489654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 283
Target Start/End: Original strand, 46978982 - 46979107
Alignment:
Q  157 atgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgt 256  Q
    ||||||| | ||||| ||||||||||||||||||||||||||  |||||| | |||||| || ||||| |||||||||||| |||||||  | |||||||    
T  46978982 atgaagctccgatacggatacgggtgcgggtacgatacgatatggatacgcggatacgcgaatttttttaaatttaggatatgatacggtcaggatacgt 46979081  T
Q  257 taacaaaaaatttatactaaaacttat 283  Q
    |||| ||||||||||| ||||| ||||    
T  46979082 taac-aaaaatttataataaaatttat 46979107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 21854156 - 21854054
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||| | |||| | |||| | ||| ||||||||||||||||| |||| |||||||||||| |||||||| ||||||| ||||| |||    
T  21854156 cgggtacgatacgatacgggtacgcggatacacgaaaattttaaaatttaggatatgatatggctaagatacgataacaaaatatttatagtaaaattta 21854057  T
Q  283 tat 285  Q
    |||    
T  21854056 tat 21854054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 21858644 - 21858549
Alignment:
Q  190 gatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||| | |||| | |||| | | |||||||||||| |||||||||||| | |||||||||||||||||| ||||||||||||| ||||||    
T  21858644 gatacgatacgggtacgcggatacacgatatttttaaaattcaggatacgatacagttaagatacgttaacaaaatatttatactaaaatttatat 21858549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 52695221 - 52695351
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| | ||| |||||  ||||||||||||||||||||   ||||  |||||||||| | ||| ||||||| |||||||||| ||||| ||||    
T  52695221 ctatgaagcccgggtacggatacaagtgcgggtacgatacgatacgagtacgcaaatacgcaaattattttaaatttaagatacgatacagctaaaatac 52695320  T
Q  255 gttaacaaaaaatttatactaaaacttatat 285  Q
    ||| ||||||  || ||||||||||| ||||    
T  52695321 gttgacaaaattttgatactaaaactcatat 52695351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 12176452 - 12176528
Alignment:
Q  208 gaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||  |||| |||||||| ||||||    
T  12176452 gaatacgcgaaatttttaaaatt-aggatacgatacggttaagatacgttaacaaattatttgtactaaaatttatat 12176528  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 51240618 - 51240752
Alignment:
Q  179 ggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaa 278  Q
    ||||||||||||||| ||||  | |||| | |||||| || |||||||| ||||||||||||||||| |||||||| || ||||||  ||||||||||||    
T  51240618 ggtgcgggtacgatatgatatgggtacgcggatacgcgaactttttaaa-tttaggatacgatacggttaagatacattgacaaaatttttatactaaaa 51240716  T
Q  279 ct--tatatatgtaaagcacttgaagaaaataagca 312  Q
    ||  ||| | ||||||  ||||||||| ||||||||    
T  51240717 ctcatatgtgtgtaaaatacttgaagataataagca 51240752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 21842974 - 21842915
Alignment:
Q  219 atttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaa 278  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  21842974 atttttaaaattcaggatacgatacaactaagatacgttaacaaaatatttatactaaaa 21842915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 36171907 - 36171981
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||  ||||||||||| | ||||||    
T  36171907 atacgcaaaatttttaaaatt-aggatacgatatggctaagatactttaacaaattatttatactaatatttatat 36171981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 2111785 - 2111721
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  2111785 tttttaaaatt-aggatacgatacggctaagatacattaacaaaatatttataccaaaatttatat 2111721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 17063819 - 17063859
Alignment:
Q  225 aaaatttaggatacgatacggctaagatacgttaacaaaaa 265  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17063819 aaaatttaggatacgatacggctaagatacgttaacaaaaa 17063859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 35433652 - 35433585
Alignment:
Q  217 aaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||  ||||||||||||| ||||||    
T  35433652 aaatttttaaaatt-aggatacgatacgtttaagatacgttaacaaattatttatactaaaatttatat 35433585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 20368965 - 20369054
Alignment:
Q  226 aaatttaggatacgatacggctaagatacgttaacaaaaaa---tttatactaaaacttatatatgtaaagcacttgaagaaaataagca 312  Q
    ||||||| |||| |||||||||||||| ||||||||| |||   ||||||||||||||||| | | ||||  ||||||||||||||||||    
T  20368965 aaatttaagatatgatacggctaagattcgttaacaacaaaaattttatactaaaacttatgtgtataaaatacttgaagaaaataagca 20369054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 319
Target Start/End: Complemental strand, 29324551 - 29324413
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||| | |||  | |||||| || | ||| |||||||||||||||| ||| || ||||| || |||||||||| ||| | |||||||    
T  29324551 cgggtacgatacgatacgggtacacggatacgcgaattattttaaatttaggatacgattcggttatgatacattgacaaaaaattcataatgaaactta 29324452  T
Q  283 tat--atgtaaagcacttgaagaaaataagcactaatta 319  Q
    |||  |||||||  ||||||| ||||||| || ||||||    
T  29324451 tatgcatgtaaaatacttgaaaaaaataaacattaatta 29324413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 16343321 - 16343248
Alignment:
Q  211 tacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||| |||||||| ||||| |||||||||||||| |||||||||| ||||||  ||||||||||||| ||||||    
T  16343321 tacgcgaaattttttaaatt-aggatacgatacggttaagatacgtcaacaaattatttatactaaaatttatat 16343248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 47014787 - 47014725
Alignment:
Q  216 aaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaa 278  Q
    ||||||||||||||| |||||||||||||| | | |||||||||||||| ||||| |||||||    
T  47014787 aaaatttttaaaattaaggatacgatacggatcaaatacgttaacaaaatatttacactaaaa 47014725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 2119279 - 2119214
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||| |||||||||||||||||||   |||||||| | |||||||||||||||||||| |||||||    
T  2119279 ttttaaaaatttaggatacgatacaattaagatacatcaacaaaaaatttatactaaagcttatat 2119214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 20178762 - 20178838
Alignment:
Q  247 taagatacgttaacaaaaaatttatactaaaact--tatatatgtaaagcacttgaagaaaataagcactaattacc 321  Q
    |||||||||| ||||||||||||||| |||||||  ||||||||||||  ||||||| |||||||||| | ||||||    
T  20178762 taagatacgtcaacaaaaaatttatattaaaacttatatatatgtaaaatacttgaaaaaaataagcattgattacc 20178838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 31489175 - 31489292
Alignment:
Q  190 gatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat--at 287  Q
    |||||||||| |||||||| ||| || ||||||| ||||||  |||||| |||||||||| | ||||||||| |  ||||||||||||| | ||||  ||    
T  31489175 gatacgatacggatacgtggatatgcgaaatttt-aaaattctggatacaatacggctaatacacgttaacacattatttatactaaaattaatatgcat 31489273  T
Q  288 gtaaagcacttgaagaaaa 306  Q
    ||||| |||||||| ||||    
T  31489274 gtaaaacacttgaaaaaaa 31489292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 24121460 - 24121416
Alignment:
Q  241 tacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||| |||||||||||||| ||||||||||||| ||||||    
T  24121460 tacggctaatatacgttaacaaaatatttatactaaaatttatat 24121416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 12736915 - 12736808
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    |||| ||||||||| |||| ||||| | |||||| |||| |||  || | ||| |||||  |||||||||||||||||| | |||| |||| ||||||||    
T  12736915 tacgagtgcgggtatgatatgatacgggtacgtggatacacaa--ttctaaaattttagagtacgatacggctaagatatggtaac-aaaattttatact 12736819  T
Q  275 aaaacttatat 285  Q
    |||||||||||    
T  12736818 aaaacttatat 12736808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 49508045 - 49508087
Alignment:
Q  221 ttttaaaatttaggatacgatacggctaagatacgttaacaaa 263  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||    
T  49508045 ttttaaaatttagaatacgatacgtctaagatactttaacaaa 49508087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 10224169 - 10224234
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||||| |||||| |||| |||||||| | | ||||||||||||||  |||||||||| ||||||    
T  10224169 gatacgtcaatacggaaaaattttaaaaatcaagatacgatacggctgggatacgttaataaaaaa 10224234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 22610311 - 22610367
Alignment:
Q  216 aaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    |||||||| |||| | | |||||||||||||| ||||||||||| |||||| |||||    
T  22610311 aaaattttcaaaaatcaagatacgatacggctgagatacgttaaaaaaaaaattata 22610367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 23877122 - 23877289
Alignment:
Q  153 gcctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagat 252  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||| ||||||   |||||| |  |||| ||||||||||||||||||||||||||||    
T  23877122 gcctatgaagcccggatacagatacgggtgcggata-gatacgatacggatacgcagatacgctagtttttcaaaatttaggatacgatacggctaagat 23877220  T
Q  253 acgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagcactaatta 319  Q
    ||||||||||||||||||||||| ||||||||  || |||||  ||||||||||||||| || ||||||    
T  23877221 acgttaacaaaaaatttatactacaacttatatgtaagtaaaatacttgaagaaaataaacattaatta 23877289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 17748432 - 17748558
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||| ||| ||||| ||||||||||||||||||||||    | | || | | ||||||||| |||| |||||||||||||| ||||||||||||||     
T  17748432 ctatgaatcccggatacggatacgggtgcgggtacgatac----cgggtatgcggatacgcaaatttttcaaaatttaggatacaatacggctaagataa 17748527  T
Q  255 gttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||||||||||||||||||||    
T  17748528 gttaacaaaaaatttatactaaaacttatat 17748558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 11789003 - 11789130
Alignment:
Q  156 tatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacg 255  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||| ||||   |||||   |||||||||||||||||||||||||||| || ||||||    
T  11789003 tatgaagccccgatacggatacgggtgcgggtacgatacaatacaggtacgcagatacg-tgaatttttaaaatttaggatacgatacggttaggatacg 11789101  T
Q  256 ttaacaaaaaatttatactaaaacttatat 285  Q
    ||||| |||| |||||| ||||||||||||    
T  11789102 ttaac-aaaattttataataaaacttatat 11789130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 2813419 - 2813521
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||| | ||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||| ||||| |||    
T  2813419 cgggtacgaaatgatacggatacgcggatacgcgaaatttttaaaatttaggatacgatacggctaagatgtgttaacaaaatatttatattaaaattta 2813518  T
Q  283 tat 285  Q
    |||    
T  2813519 tat 2813521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 16591071 - 16591203
Alignment:
Q  174 atacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatac 273  Q
    |||||| ||| ||||||||||||||| ||||||||  ||||| |||||||||||||||||| |   |||||| ||||||||||||||||||| ||||||     
T  16591071 atacggatgctggtacgatacgatac-gatacgtg--tacgcgaaatttttaaaatttagggttttatacggttaagatacgttaacaaaaattttataa 16591167  T
Q  274 taaaacttatat--atgtaaagcacttgaagaaaat 307  Q
    ||||||||||||  |||||||  |||||||||||||    
T  16591168 taaaacttatatgcatgtaaaatacttgaagaaaat 16591203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 309
Target Start/End: Original strand, 24728192 - 24728328
Alignment:
Q  174 atacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatac 273  Q
    |||| |||||||||||||||| |||| |||||| | |||| | || | |||||| |||||||||| ||| | || ||||| |||||||||||||||||||    
T  24728192 atacaggtgcgggtacgatacaatacggatacgcggatacacgaattatttaaa-tttaggatacaataagtctgagataagttaacaaaaaatttatac 24728290  T
Q  274 taaaactta--tatatgtaaagcacttgaagaaaataa 309  Q
    |||||||||  | ||||||||  |||||||||||||||    
T  24728291 taaaacttatttgtatgtaaaatacttgaagaaaataa 24728328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 285
Target Start/End: Complemental strand, 37232223 - 37232148
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||| |||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||    
T  37232223 atacgcgaaatttttaaaattcaagatacgatatggctaagatacgttaacaaaatatttatattaaaatttatat 37232148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 9410366 - 9410211
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaa--aatttaggatacgatacggctaagat 252  Q
    ||||||||||  ||||| |||| |||||| ||||||||||||||| | |||  | |||||| |  |||||    ||||||||||||||||||| ||||||    
T  9410366 ctatgaagcctcgatacggataggggtgctggtacgatacgatacgggtacacggatacgcgatttttttttttaatttaggatacgatacggttaagat 9410267  T
Q  253 acgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||||||||||| ||||| |||||||||||  |||| |||  |||||||||||||    
T  9410266 acgttaacaaaaaa-ttataataaaacttatatgtatgaaaaatacttgaagaaaat 9410211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 31430981 - 31431110
Alignment:
Q  185 ggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata 284  Q
    ||||||||||||||  |  ||||  ||| |||||||||| ||||||||||| | |||||| |||| ||||||||| ||||  | ||||||||||||||||    
T  31430981 ggtacgatacgatatgggcacgttcatatgcaaaattttgaaaatttaggagatgatacgactaaaatacgttaataaaatttgtatactaaaacttata 31431080  T
Q  285 t--atgtaaagcacttgaagaaaataagca 312  Q
    |  |||||||  ||||||||||||||||||    
T  31431081 tgcatgtaaaatacttgaagaaaataagca 31431110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 13003663 - 13003587
Alignment:
Q  235 atacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||  ||||||||  | |||||||||||||    
T  13003663 atacaatacgcctaagatacgttaacaaaaaatttatactaaaacttatatgtatgtaaaatatttgaagaaaataa 13003587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 12007159 - 12007077
Alignment:
Q  203 tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||| ||||||||| | ||||||||||||||||||||||  ||||||||||||||||||   ||||||| ||| |||||||    
T  12007159 tacgtggatacgcaaactatttaaaatttaggatacgatacaactaagatacgttaacaaattttttataccaaatcttatat 12007077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 39296614 - 39296695
Alignment:
Q  191 atacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    |||||||||  ||| ||| ||| ||||||||||| |||||||||||| |||||| ||||||||| |||| ||||||||||||    
T  39296614 atacgatacgaatatgtggatatgcaaaattttttaaatttaggatatgatacgactaagataccttaataaaaaatttata 39296695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 11755405 - 11755495
Alignment:
Q  221 ttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat--atatgtaaagcacttgaagaaaataa 309  Q
    ||||||||||||||||| ||||| |||||||||||||||||||   |||||| ||||||||||    |||||||  |||||||||||||||    
T  11755405 ttttaaaatttaggatatgatactgctaagatacgttaacaaattttttatattaaaacttatgcgcatgtaaaatacttgaagaaaataa 11755495  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 14180579 - 14180468
Alignment:
Q  174 atacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatac 273  Q
    |||||||| || ||||||||| |||  | |||| | ||| | ||| |||||||||||||  |||| || | |||||||||||||||||||| ||||||||    
T  14180579 atacgggtacgtgtacgatacaatatgggtacgcggatatgtaaattttttaaaatttaaaatacaatgctgctaagatacgttaacaaaatatttatac 14180480  T
Q  274 taaaacttatat 285  Q
    ||||| ||||||    
T  14180479 taaaatttatat 14180468  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 9136405 - 9136471
Alignment:
Q  219 atttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||| |||||| |||||  |||| |||||||||||||| || |||||||||| ||||||    
T  9136405 atttttaaaattcaggatatgatacatctaaaatacgttaacaaaatatatatactaaaatttatat 9136471  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 24888449 - 24888518
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaac 279  Q
    |||||||||  |||| ||||||||||||||||||| |  |||||||||||||||   |||||||||||||    
T  24888449 atacgcaaatctttttaaatttaggatacgatacgaccgagatacgttaacaaattttttatactaaaac 24888518  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 32856309 - 32856224
Alignment:
Q  225 aaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||||||| ||||||||||| |||||||||||||||||    ||||| ||||||||||||  ||||||||  ||||||| |||||||    
T  32856309 aaaatttatgatacgatacgactaagatacgttaacaatttttttat-ctaaaacttatatgtatgtaaaatacttgaacaaaataa 32856224  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Original strand, 31332273 - 31332346
Alignment:
Q  191 atacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaa 264  Q
    ||||||| |||||| ||| |||| | || ||||||||||||| |||| |||||| ||||||||| || ||||||    
T  31332273 atacgattcagatatgtggatacacgaattttttaaaatttaagataagatacgactaagatactttgacaaaa 31332346  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 32425429 - 32425396
Alignment:
Q  234 gatacgatacggctaagatacgttaacaaaaaat 267  Q
    |||||||||||||||||||||||||| |||||||    
T  32425429 gatacgatacggctaagatacgttaataaaaaat 32425396  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 36484523 - 36484458
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||||||  ||||| |||||||| |||| | | |||||||||||||| ||||||||||| ||||||    
T  36484523 gatacgtcgatacggaaaattttcaaaaatcaagatacgatacggctgagatacgttaataaaaaa 36484458  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 11991173 - 11991101
Alignment:
Q  181 tgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagata 253  Q
    |||||||| |||||||||||  || | | |||||  |||||||||||||||| |||| |||| ||||||||||    
T  11991173 tgcgggtatgatacgatacaagtatgcggatacgtgaaatttttaaaatttaagatatgatatggctaagata 11991101  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 13422703 - 13422647
Alignment:
Q  216 aaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    ||||||||||||| | | ||||||||||||||  |||||||||| |||||| |||||    
T  13422703 aaaatttttaaaaatcaagatacgatacggctgggatacgttaataaaaaaattata 13422647  T

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Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 158 - 321
Target Start/End: Complemental strand, 36467637 - 36467474
Alignment:
Q  158 tgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgtt 257  Q
    ||||| |||||||||||||||| ||| ||||||||| ||||| | |||| | | || |||  |||  ||||||||||||||||||||||||| |||||||    
T  36467637 tgaagtccagatacagatacggatgcaggtacgatatgatacgggtacgcggagacacaatttttcaaaaatttaggatacgatacggctaaaatacgtt 36467538  T
Q  258 aacaaaaaatttatactaaaacttatatatgtaaagcacttgaagaaaataagcactaattacc 321  Q
    |||||||  ||||||||||||  |||||||||||| ||||||||||||||||||||| ||||||    
T  36467537 aacaaaatttttatactaaaatatatatatgtaaaacacttgaagaaaataagcacttattacc 36467474  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 40364107 - 40364016
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  || |||||  |||||||||||||||    
T  40364107 tttttaaaatttaggatacgatacgactaagatacgttaacaaaaaatttatactaaaacttatatgtacgtaaaatacttgaagaaaataa 40364016  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 35306570 - 35306432
Alignment:
Q  173 gatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    ||||||||||| |||||||||||| || | |||||| ||||||||| ||| | |||||||||||| ||||||| || ||||||||||||||||| | |||    
T  35306570 gatacgggtgcaggtacgatacgagacgggtacgtggatacgcaaattttattaaatttaggatatgatacggttaggatacgttaacaaaaaaataata 35306471  T
Q  273 ctaaaacttatat--atgtaaagcacttgaagaaaataa 309  Q
    |||||| ||||||  |||||||  |||||||||||||||    
T  35306470 ctaaaatttatatgcatgtaaaatacttgaagaaaataa 35306432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 309
Target Start/End: Complemental strand, 7018323 - 7018166
Alignment:
Q  154 cctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagata 253  Q
    |||||||||||| ||||   ||||||||| |||||||||| ||||||| ||   ||||||   |  ||||| ||||||||||||||||||||||||||||    
T  7018323 cctatgaagccctgatattaatacgggtgtgggtacgatatgatacaggtatacgaatacatgattttttttaaatttaggatacgatacggctaagata 7018224  T
Q  254 cgttaacaaaaaatttatactaaaactt--atatatgtaaagcacttgaagaaaataa 309  Q
    |||||||||||  |||||||||||||||  || ||||||||  |||||||||||||||    
T  7018223 cgttaacaaaatttttatactaaaacttacatgtatgtaaaatacttgaagaaaataa 7018166  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 40498928 - 40498828
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||  |||||||||||||    
T  40498928 atacggaaattttttaaaatttaggatacgatacagctaagatacgttaa-aaaaaatttatactaaaacttatatgtatgtaaaatacttgaagaaaat 40498830  T
Q  308 aa 309  Q
    ||    
T  40498829 aa 40498828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 26353070 - 26352934
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    |||||||| || ||| ||| | ||||| ||||||||||| | ||||||| |||||| ||||||| ||||||||||||||||||||||||| |||||||||    
T  26353070 tacgggtggggatacaatatgctacaggtacgtgaatacacgaaatttt-aaaattcaggataccatacggctaagatacgttaacaaaatatttatact 26352972  T
Q  275 aaaacttatat-atgtaaagcacttgaagaaaataagca 312  Q
    |||| |||||| |||||||  ||||||| ||||||||||    
T  26352971 aaaatttatatcatgtaaaatacttgaa-aaaataagca 26352934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 8948419 - 8948347
Alignment:
Q  214 gcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatata 286  Q
    |||||| ||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||    
T  8948419 gcaaaaattttaaaatttaggatatgatacaactaagatacgttaacaaaaaatttatactaaaacttatata 8948347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 36925993 - 36925885
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    ||||||||| ||||||||||||||| | ||||   |||||||||||| ||||| |||||||||| || ||||||||||||||||| |||| |||||||||    
T  36925993 tacgggtgcaggtacgatacgatacgggtacgcagatacgcaaaattattaaa-tttaggatacaat-cggctaagatacgttaataaaatatttatact 36925896  T
Q  275 aaaacttatat 285  Q
    |||| ||||||    
T  36925895 aaaatttatat 36925885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 5591142 - 5591051
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| ||||||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||  |||| |||  |||||||||||||||    
T  5591142 ttttaaaaatttaggatacgatgcggttaagatatgttaataaaaaatttatactaaaacttatatttatgcaaattacttgaagaaaataa 5591051  T

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Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 312
Target Start/End: Original strand, 38595719 - 38595853
Alignment:
Q  179 ggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaa 278  Q
    ||||||||||||||| ||||  | |||| | |||||| || |||||||| ||||||||||||||||| |||||||| || ||||||  ||||||||||||    
T  38595719 ggtgcgggtacgatatgatatgggtacgcggatacgcgaactttttaaa-tttaggatacgatacggttaagatacattgacaaaatttttatactaaaa 38595817  T
Q  279 ct--tatatatgtaaagcacttgaagaaaataagca 312  Q
    ||  ||| | ||||||  ||||||||| ||||||||    
T  38595818 ctcatatgtgtgtaaaatacttgaagataataagca 38595853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 43344555 - 43344642
Alignment:
Q  190 gatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaa 278  Q
    ||||||||||||||| | |||||||| |||||||||||| ||||  ||||||||  |||||||||| |||||||| |||||||||||||    
T  43344555 gatacgatacagatatgcgaatacgcgaaatttttaaaa-ttagactacgatacaactaagatacgctaacaaaatatttatactaaaa 43344642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 14749718 - 14749645
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata 284  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||| |||  ||||||||||||| |||||    
T  14749718 atacgcaaaatttttaaaatt-aggatacgatacgagtaagatacgttaagaaattatttatactaaaatttata 14749645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 17329207 - 17329059
Alignment:
Q  167 gatacagatacgggtgcgggtacgatacgatacagatacgt----gaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaa 262  Q
    |||||||||||  |||||||||||||||||||| | ||||     | |||| | || ||||| |||||||||||||||||| ||  ||||||||||||||    
T  17329207 gatacagatacaagtgcgggtacgatacgatacgggtacgcacgcggatacacgaatttttttaaatttaggatacgatacagccgagatacgttaacaa 17329108  T
Q  263 aaaatttatactaaaactta--tatatgtaaagcacttgaagaaaataa 309  Q
    |   ||||||||||||||||  | ||||| ||  |||||||||||||||    
T  17329107 attttttatactaaaacttatttgtatgtgaaatacttgaagaaaataa 17329059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 30382465 - 30382601
Alignment:
Q  185 ggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaact--ta 282  Q
    ||||||||||||||| | |||||| |||| | |  |||||||||||||| ||||||||||||||| ||||||| ||||||   ||||| |||||||  ||    
T  30382465 ggtacgatacgatacgggtacgtggatacacgat-tttttaaaatttagaatacgatacggctaaaatacgttgacaaaattattatattaaaactcata 30382563  T
Q  283 tatatgtaaagcacttgaagaaaataagcactaattac 320  Q
    | | ||||||  || ||||||||||||| | |||||||    
T  30382564 tgtgtgtaaattacatgaagaaaataagtattaattac 30382601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 41324324 - 41324223
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagcactaat 317  Q
    |||||||||||||||||| ||||||| ||||||||||||| |||||   |||  |||||||||||  ||||||||  ||||||| ||||||| || | ||    
T  41324324 tttttaaaatttaggatatgatacggttaagatacgttaaaaaaaa---tatgataaaacttatatgtatgtaaaatacttgaacaaaataaacattgat 41324228  T
Q  318 taccc 322  Q
    |||||    
T  41324227 taccc 41324223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 3353595 - 3353485
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    |||| ||||||||||| |||||||| | || ||| |||||| ||| | |||||||| |||||| |||||  |||||||| || || |||| |||||| ||    
T  3353595 tacgagtgcgggtacggtacgatacgggtatgtggatacgcgaaaatattaaaattcaggatatgatacaactaagatatgtaaagaaaatatttatgct 3353496  T
Q  275 aaaacttatat 285  Q
    |||| ||||||    
T  3353495 aaaatttatat 3353485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 11458280 - 11458169
Alignment:
Q  173 gatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    |||||| ||| ||||| ||||||||||  ||| || ||||||||||| ||| |||||| | ||||||||||| |||| |||| |||||||    ||||||    
T  11458280 gatacgagtgtgggtatgatacgatacgaataagtaaatacgcaaaaattt-aaaattgaagatacgatacgactaaaatacattaacaatttttttata 11458182  T
Q  273 ctaaaacttatat 285  Q
    | |||||||||||    
T  11458181 caaaaacttatat 11458169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 38142082 - 38141972
Alignment:
Q  165 cagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaa 264  Q
    ||||||| |||||||||||||||| ||||| |||| ||||||||| |        ||||| |||||||||||| ||||| | || ||||||||||  |||    
T  38142082 cagatacggatacgggtgcgggtaagatacaatacggatacgtgatt-------tttttttaaatttaggatatgataccgttaggatacgttaa-taaa 38141991  T
Q  265 aatttatactaaaacttat 283  Q
    |||||||| ||||||||||    
T  38141990 aatttataataaaacttat 38141972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 37272614 - 37272689
Alignment:
Q  235 atacgatac-ggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    ||||||||| || ||||||||||||||||||||||||||  |||| |||||  ||||||||  ||||||| |||||    
T  37272614 atacgatacaggttaagatacgttaacaaaaaatttatataaaaatttatatgtatgtaaaatacttgaaaaaaat 37272689  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 19721333 - 19721486
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||| | ||||||||||||||||||||||||||||||||  | |||| | ||||||  | ||||||||||||||||||||||| || || |||||    
T  19721333 ctatgaagctccgatacagatacgggtgcgggtacgatacgatatgggtacgcggatacgcggattttttaaaatttaggatacgatatggttaggatac 19721432  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||| ||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  19721433 gttaac-aaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaat 19721486  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 307
Target Start/End: Complemental strand, 53586716 - 53586595
Alignment:
Q  187 tacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata-- 284  Q
    ||||||||||||| | |||||| |||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  53586716 tacgatacgatacgggtacgtggatacgcgaatttttcaaaatttag-atacgatacggctaagatacgttaacaaaaaatttatactaaaacttatatt 53586618  T
Q  285 tatgtaaagcacttgaagaaaat 307  Q
    ||||||||  |||||||||||||    
T  53586617 tatgtaaaatacttgaagaaaat 53586595  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 184 - 319
Target Start/End: Complemental strand, 6008537 - 6008400
Alignment:
Q  184 gggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat 283  Q
    ||||||||||||||||||||| | | |||||  ||  ||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||    
T  6008537 gggtacgatacgatacagatatgcggatacgtgaatatttcaaaatttaggatacgatacggctaagatacttaaacaaaaaatttatattaaaacttat 6008438  T
Q  284 a--tatgtaaagcacttgaagaaaataagcactaatta 319  Q
    |  ||||||||  ||||||||||||||| || ||||||    
T  6008437 atgtatgtaaaatacttgaagaaaataaacattaatta 6008400  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 34072678 - 34072778
Alignment:
Q  184 gggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat 283  Q
    |||||| ||||||||| |||||||  |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  34072678 gggtacaatacgatacggatacgtagatacgcgaaatttttaaaact-aggatacgatacggctaagatacgttaacaaaatatttatactaaaatttat 34072776  T
Q  284 at 285  Q
    ||    
T  34072777 at 34072778  T

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Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 40217995 - 40217904
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| ||||  |||||||||||||||    
T  40217995 tttttgaaatttaggatacgatacggctaagatacgttaacaaaatatttatactaaaacttatatgtatataaaatacttgaagaaaataa 40217904  T

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Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 22198549 - 22198655
Alignment:
Q  208 gaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaa 305  Q
    |||||||| || ||||||||||| |||| | |||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||  ||||||| |||    
T  22198549 gaatacgcgaagtttttaaaattcaggacaagatacggctaagatgcgttaacaaaatatttatactaaaacttatatacatgtaaaatacttgaaaaaa 22198648  T
Q  306 ataagca 312  Q
    |||||||    
T  22198649 ataagca 22198655  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 38947541 - 38947638
Alignment:
Q  187 tacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||| | |||| | ||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||    
T  38947541 tacgatacgatacgggtacgcggatatgcaaaatttttaaaatt-aggatacgatacggttaagatatgttaacaaaatatttatactaaaatttatat 38947638  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 2295850 - 2295755
Alignment:
Q  173 gatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatt 268  Q
    ||||||||||| |||| |||||||||| | |||| | |||| | |  ||||| |||||||||||||||||||| || |||||||||||||||||||    
T  2295850 gatacgggtgcaggtaagatacgatacgggtacgcggatacacgattttttttaaatttaggatacgatacggttaggatacgttaacaaaaaatt 2295755  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 54163089 - 54163162
Alignment:
Q  215 caaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatac--taaaacttatata 286  Q
    |||||||| ||||| |||||||||||||  |||||||||| ||||||||||||||||||  |||||||||||||    
T  54163089 caaaatttataaaacttaggatacgatatagctaagatactttaacaaaaaatttatactataaaacttatata 54163162  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 42399426 - 42399349
Alignment:
Q  203 tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaact 280  Q
    |||||| |||||| ||||||||  |||||||||||||||||| ||||||||||| |||||||  |||| |||||||||    
T  42399426 tacgtggatacgctaaatttttttaatttaggatacgatacgactaagatacgtcaacaaaatttttaaactaaaact 42399349  T

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Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 47724571 - 47724635
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||| ||||||    
T  47724571 tttttaaaatt-aggatacgatacggctaatatacgttaacaaattatttatactaaaatttatat 47724635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 6332363 - 6332305
Alignment:
Q  214 gcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    |||||| |||||||||||||||||| |||||||||||| | |||||||||| |||||||    
T  6332363 gcaaaaattttaaaatttaggatacaatacggctaagaaaagttaacaaaatatttata 6332305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 47922699 - 47922753
Alignment:
Q  225 aaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaac 279  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||    
T  47922699 aaaatttagaatacgatacggatatgatacgttaacaaaaaatttataataaaac 47922753  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 309
Target Start/End: Original strand, 25059081 - 25059166
Alignment:
Q  224 taaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatatatgtaaagcacttgaagaaaataa 309  Q
    |||||||||| |||| |||||  ||||||| ||||||||||| |||||||||||   ||| ||||||||  |||||||||||||||    
T  25059081 taaaatttagaatacaatacgattaagatatgttaacaaaaattttatactaaattatatgtatgtaaaatacttgaagaaaataa 25059166  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 49196010 - 49195925
Alignment:
Q  181 tgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||| ||||||||||| ||| |||| ||||||   ||  |||| |||||||||||||||||||||||||||||  |||||||||||    
T  49196010 tgcgagtacgatacgaaacatatacatgaatatataagtttttaaaaatttaggatacgatacggctaagatatattaacaaaaaa 49195925  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 285
Target Start/End: Complemental strand, 1052591 - 1052556
Alignment:
Q  250 gatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||||||||||||||||||||||||||    
T  1052591 gatacgttaacaaaaaatttatactaaaacttatat 1052556  T

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Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 312
Target Start/End: Original strand, 28101696 - 28101790
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaataagca 312  Q
    |||||| |||||||||||||||||| ||||||||| ||| |||||   | || |||||||||||||  ||| |||  ||||||||||||||||||    
T  28101696 tttttacaatttaggatacgatacgactaagatacattaccaaaattgtaatcctaaaacttatatgcatgcaaaatacttgaagaaaataagca 28101790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 45774500 - 45774347
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| |||||||||||||||||| |||  | ||||||| | |||| | ||||   || || || |||||||||||||| ||||| || |||||    
T  45774500 ctatgaagccccgatacagatacgggtgcgagtatcaaacgatacggctacgcggatacatgaatttctttaaatttaggatacggtacggttaggatac 45774401  T
Q  255 gttaacaaaaaatttatactaaaactta--tatatgtaaagcacttgaagaaaat 307  Q
     ||||| ||||| ||||| ||| |||||  ||||||||||  |||| ||||||||    
T  45774400 attaac-aaaaacttataataatacttatctatatgtaaaatacttcaagaaaat 45774347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Original strand, 15476442 - 15476522
Alignment:
Q  227 aatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaa 306  Q
    |||||||||||| |||||| || ||||||||||| ||||||||||| ||||| |||||  ||||||||  ||||||||||||    
T  15476442 aatttaggatacaatacggttaggatacgttaac-aaaaatttataataaaatttatatgtatgtaaaatacttgaagaaaa 15476522  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 22588405 - 22588344
Alignment:
Q  250 gatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    ||||||||||||||||| |||||||||||||||||  ||| ||||  |||||||||||||||    
T  22588405 gatacgttaacaaaaaaattatactaaaacttatatgtatataaaatacttgaagaaaataa 22588344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 275
Target Start/End: Complemental strand, 44746866 - 44746772
Alignment:
Q  181 tgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatacta 275  Q
    |||||||| | ||||||||||||||| ||| | |  |||||||||||||| |||||| | |||  |||| | |||||||||||| ||||||||||    
T  44746866 tgcgggtaagttacgatacagatacgagaaaaagtgaaatttttaaaattcaggatatggtaccactaaaacacgttaacaaaatatttatacta 44746772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 307
Target Start/End: Original strand, 2242523 - 2242661
Alignment:
Q  174 atacgggtgcgggtacgatacgatacaga-----tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatt 268  Q
    |||||| | |||||||||||||||||| |     || ||| |||| |||| ||||||||||||||||||| |||| | || ||||| ||||  |||||||    
T  2242523 atacggatacgggtacgatacgatacaaaacgggtatgtggatacacaaattttttaaaatttaggatacaatac-gttatgatacattaa-gaaaaatt 2242620  T
Q  269 tatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||| |||||||||||  ||||||||  |||||||||||||    
T  2242621 tataataaaacttatatgtatgtaaaatacttgaagaaaat 2242661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 309
Target Start/End: Original strand, 7208217 - 7208304
Alignment:
Q  225 aaaatttaggatacgatacggctaagatacgttaac-aaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| |||||||||||||||| || ||||| ||||| |||||| |||| ||||||||||||  ||||||||  | |||||||||||||    
T  7208217 aaaaattaggatacgatacggttaggatacattaacaaaaaaaattatcctaaaacttatatgtatgtaaaatatttgaagaaaataa 7208304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Complemental strand, 44987678 - 44987611
Alignment:
Q  247 taagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaataagca 312  Q
    ||||||||||||||||||    |||||||||||||||||  |||||||  ||||||||||||||||||    
T  44987678 taagatacgttaacaaaattcatatactaaaacttatattcatgtaaaatacttgaagaaaataagca 44987611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 45662073 - 45662010
Alignment:
Q  246 ctaagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaat 307  Q
    |||||||||||||||||||  |||||||||||||||||||  |||||||  | |||||||||||    
T  45662073 ctaagatacgttaacaaaatttttatactaaaacttatatgcatgtaaaatatttgaagaaaat 45662010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 1052553 - 1052522
Alignment:
Q  251 atacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||||||||||||||||||    
T  1052553 atacgttaacaaaaaatttatactaaaactta 1052522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 43770273 - 43770348
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||| ||||| |||||||| || |||  |||||| ||||||| ||||||| || ||||||||||||| ||||||    
T  43770273 atacgcgaaattcttaaaattcagaatataatacggttaagatatgttaacataatatttatactaaaatttatat 43770348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 4776184 - 4776091
Alignment:
Q  221 ttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagca 312  Q
    ||||||||||||| ||||||| | ||||| ||||||||| || |  |||||| |||||||||||  ||||||||  ||||||  ||||||||||    
T  4776184 ttttaaaatttagaatacgatgcagctaaaatacgttaataatatttttatattaaaacttatatgtatgtaaaatacttgataaaaataagca 4776091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 25204311 - 25204377
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatata 286  Q
    |||| ||||||||| ||||||||||  |||||||| || | ||||| |||||||||||| |||||||    
T  25204311 ttttaaaaatttagaatacgatacgagtaagatacattgataaaaattttatactaaaatttatata 25204377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 9656188 - 9656245
Alignment:
Q  223 ttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaact 280  Q
    |||||||||| ||| | ||| || |||||||||||||||||||||||||  |||||||    
T  9656188 ttaaaatttaagattcaatatggttaagatacgttaacaaaaaatttatgataaaact 9656245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Complemental strand, 24785030 - 24784965
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||||||  ||||| |||||||| |||| | | |||||||||||||| ||||||||||| ||||||    
T  24785030 gatacgttgatacggaaaattttcaaaaatcaagatacgatacggctgagatacgttaataaaaaa 24784965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 24823236 - 24823301
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||||||  ||||| |||||||| |||| | | |||||||||||||| ||||||||||| ||||||    
T  24823236 gatacgttgatacggaaaattttcaaaaatcaagatacgatacggctgagatacgttaataaaaaa 24823301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 42630014 - 42630079
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||||||  ||||| |||| ||| |||| ||| |||||||||||||| ||||||||||| ||||||    
T  42630014 gatacgtcgatacggaaaaatttcaaaaattaagatacgatacggctgagatacgttaataaaaaa 42630079  T

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Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 49470838 - 49470782
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||| |||| ||| |||| ||| |||||||||||||| ||||||||||| ||||||    
T  49470838 atacggaaaaatttcaaaaattaagatacgatacggctgagatacgttaataaaaaa 49470782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 53018290 - 53018349
Alignment:
Q  250 gatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    ||||||||| ||||||| ||||| |||||||||||  ||||||||  |||||||||||||    
T  53018290 gatacgttaccaaaaaaattataataaaacttatatgtatgtaaaatacttgaagaaaat 53018349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 8486423 - 8486307
Alignment:
Q  168 atacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaat 267  Q
    |||| ||||| ||||||||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    |    
T  8486423 atactgatacaggtgcgggtgcgatacgatacgggtacgtggatacgcaaaatttttaaaatttaggatacgatacggctaagatacgataacaattt-t 8486325  T
Q  268 ttatactaaaacttatat 285  Q
    ||||||||||||||||||    
T  8486324 ttatactaaaacttatat 8486307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 7435183 - 7435026
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    |||||||||||  ||||||||| |||||||||||||||||||||  | |||   ||||| | || |||| ||||||||||||||||||||  ||||||||    
T  7435183 ctatgaagcccgaatacagatatgggtgcgggtacgatacgataggggtacacaaatacacgaatttttcaaaatttaggatacgatacgagtaagatac 7435084  T
Q  255 gttaacaaaaaa-tttatactaaaact--tatatatgtaaagcacttgaagaaaataa 309  Q
    |||||||||||| ||||||||||||||  ||| ||||||||  |||||||||||||||    
T  7435083 gttaacaaaaaattttatactaaaacttctatgtatgtaaaatacttgaagaaaataa 7435026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 2987953 - 2988044
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||  ||||||||  |||||||||||||||    
T  2987953 ttttcaaaatttaggatacgatacggctaagatacgttaacaaaaacattatactaaaccttatatgtatgtaaaatacttgaagaaaataa 2988044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 2031977 - 2032130
Alignment:
Q  154 cctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagata 253  Q
    ||||||||||||  |||| |||||||||||||||||||||||| ||   || | | |||||| || ||||| ||||||||||||||||||   || ||||    
T  2031977 cctatgaagccccaatacggatacgggtgcgggtacgatacgaaacgagtatgcggatacgc-aatttttttaaatttaggatacgatacaattaggata 2032075  T
Q  254 cgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    | ||||| ||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  2032076 cattaac-aaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaat 2032130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 10229743 - 10229652
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||| ||||  ||||||||  ||||||| |||||||    
T  10229743 ttttcaaaatttaggatacgatacaactaagatacgttaataaaaaatttatactaaaacatatatgtatgtaaaatacttgaacaaaataa 10229652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 284
Target Start/End: Original strand, 22296979 - 22297113
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaattttta------aaatttaggatacgatacggcta 248  Q
    ||||||||| | ||||||| ||||| ||||| ||| |||||||| || |||||| |||||||| ||||||       ||||||||||||   ||| | ||    
T  22296979 ctatgaagctcggatacaggtacggatgcggataccatacgatataggtacgtggatacgcaatattttttttttttaaatttaggatattctaccg-ta 22297077  T
Q  249 agatacgttaacaaaaaatttatactaaaacttata 284  Q
    ||||||||||||||||||||||||||||||||||||    
T  22297078 agatacgttaacaaaaaatttatactaaaacttata 22297113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 1929336 - 1929255
Alignment:
Q  203 tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||| |||||||| |||||||||||||| |||||||||||  | |||||||||||||||||  ||||||||||||| ||||||    
T  1929336 tacgcgaatacgcgaaatttttaaaatt-aggatacgatatagttaagatacgttaacaaattatttatactaaaatttatat 1929255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 30928680 - 30928577
Alignment:
Q  221 ttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat--atatgtaaagcacttgaagaaaataagcactaatt 318  Q
    |||| ||||||| ||||| |||| ||||| ||| |||| |||||| |||||||||||||||||  |||||||||  ||||||||||||||| || | |||    
T  30928680 tttttaaatttatgatactatacagctaaaataggttatcaaaaattttatactaaaacttatatatatgtaaaatacttgaagaaaataaacattgatt 30928581  T
Q  319 accc 322  Q
    ||||    
T  30928580 accc 30928577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 285
Target Start/End: Original strand, 17533111 - 17533203
Alignment:
Q  192 tacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||| | |||| | ||| || ||| |||||||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||| ||||||    
T  17533111 tacgatacgggtacgcggatatgcgaaaattttaaaatt-aggatacgatacggttaagaaacgttgacaaaatatttatactaaaatttatat 17533203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 12283466 - 12283529
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttat 283  Q
    |||| ||||||||||||| ||||||||||| ||| | |||||||   |||||||||||||||||    
T  12283466 ttttaaaaatttaggatatgatacggctaaaatatgctaacaaagtttttatactaaaacttat 12283529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 312
Target Start/End: Complemental strand, 10443930 - 10443771
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||| |||| | |||||   | ||||| ||||||||||||||||||||||| ||||     
T  10443930 ctatgaagcccggatacgaatacgggtgcgggtacgatacgatacaggtacgcggatacgtggatttttttaaatttaggatacgatacggctatgataa 10443831  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagca 312  Q
    |||||| |||  || |||||||||||||||  ||| ||||  ||||||||||||||||||    
T  10443830 gttaacgaaattttcatactaaaacttatatgtatataaaatacttgaagaaaataagca 10443771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 22790805 - 22790906
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    |||||||||||||||||  ||||| | ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| |||    
T  22790805 cgggtacgatacgatacgaatacgcggatacgcaaaatttttaaaatt-aggatacgatatggctaagatactttaacaaaatatttatactaaaattta 22790903  T
Q  283 tat 285  Q
    |||    
T  22790904 tat 22790906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 31183889 - 31183818
Alignment:
Q  214 gcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||    
T  31183889 gcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaatatttattctaaaatttatat 31183818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 307
Target Start/End: Original strand, 31513254 - 31513406
Alignment:
Q  156 tatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacg 255  Q
    |||||||||  |||||||||||  ||||| ||| |||||||||||| ||||   |||||| || ||||||||||||| ||||| |||||| || ||||||    
T  31513254 tatgaagcctcgatacagatacaagtgcgagtatgatacgatacaggtacgcagatacgcgaattttttaaaatttaagatacaatacggttatgatacg 31513353  T
Q  256 ttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    ||||| ||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  31513354 ttaac-aaaaatttataataaaacttatatgtatgtaaaatacttgaagaaaat 31513406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 50709917 - 50709816
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||| | |||| | |||| | |||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||| |||    
T  50709917 cgggtacgatacgatacgggtacgcggatacacgaaatttttaaaatt-aggatacgatacggctaagatacgttaataaaatatttatactaaaattta 50709819  T
Q  283 tat 285  Q
    |||    
T  50709818 tat 50709816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 320
Target Start/End: Complemental strand, 41828152 - 41828003
Alignment:
Q  167 gatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    |||||||||||||||||||||||||||||     | |||| | |||| |||| ||||| |||||||||||||||||||  ||||||| |||||  |||||    
T  41828152 gatacagatacgggtgcgggtacgatacg-----ggtacgcggatacacaaatttttttaaatttaggatacgatacgattaagataagttaa-taaaaa 41828059  T
Q  267 tttatactaaaacttata--tatgtaaagcacttgaagaaaataagcactaattac 320  Q
    |||||| |||||||||||  ||||||||  ||||||||||||| |||| |||||||    
T  41828058 tttataataaaacttatatgtatgtaaaatacttgaagaaaattagcattaattac 41828003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 320
Target Start/End: Complemental strand, 2137300 - 2137133
Alignment:
Q  154 cctatgaagcccagatacaga-tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagat 252  Q
    |||||||||| |||||||| | |||||||| | |||||||||||||| | ||||   ||||||||| ||||| | ||||||||||| ||||| |||||||    
T  2137300 cctatgaagctcagatacatagtacgggtgtgagtacgatacgatactggtacgcagatacgcaaatttttttatatttaggatacaatacgactaagat 2137201  T
Q  253 acgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaataagcactaattac 320  Q
    |||||||||||| |||||| || ||| ||||||  |||||||  ||||||| |||||||||| |||||||    
T  2137200 acgttaacaaaatatttatgct-aaatttatatgcatgtaaaatacttgaa-aaaataagcattaattac 2137133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 11767469 - 11767560
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||  ||||||||  |||||||||||||||    
T  11767469 ttttcaaaatttaggatacgatacggttaagatacgttaacaaaatttttatactaaaacatatatgtatgtaaaatacttgaagaaaataa 11767560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 17116746 - 17116623
Alignment:
Q  161 agcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaac 260  Q
    ||||| ||||| |||| |||||||||||| ||||||||| | |||| | |||||| || ||||| ||||||| |||||||||||| || |||||||||||    
T  17116746 agccccgatacggatatgggtgcgggtacaatacgatacgggtacgcggatacgcgaatttttttaaatttaagatacgatacggttaggatacgttaac 17116647  T
Q  261 aaaaaatttatactaaaacttatat 285  Q
    | |||||||||| | ||||||||||    
T  17116646 a-aaaatttataattaaacttatat 17116623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 13558821 - 13558703
Alignment:
Q  156 tatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacg 255  Q
    ||||||||||  |||| |||| |||||| ||||||||||||||||| |||||| |||||   | ||||  ||||||||||||| ||| ||||||||||||    
T  13558821 tatgaagcccgaatacggataagggtgcaggtacgatacgatacaggtacgtggatacgtgga-ttttccaaatttaggatacaatatggctaagatacg 13558723  T
Q  256 ttaacaaaaaatttatacta 275  Q
    | ||||||||||||||||||    
T  13558722 tgaacaaaaaatttatacta 13558703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 46593940 - 46594041
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||  | |||  | |||||| |||||||||||||| |||||||||||| | |||||||||||||||||| ||||||||||||| |||    
T  46593940 cgggtacgatacgatatgggtacacggatacgcgaaatttttaaaatt-aggatacgatacagttaagatacgttaacaaaatatttatactaaaattta 46594038  T
Q  283 tat 285  Q
    |||    
T  46594039 tat 46594041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 30193824 - 30193732
Alignment:
Q  192 tacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||| | |||||| ||||| ||| ||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||    
T  30193824 tacgatacgggtacgtggatacgtaaattttttaaaatt-aggatacgatagggctaagatacattaacaaaatatttatactaaaatttatat 30193732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 4967120 - 4967030
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||| |||||||||||||||||  |||||||| |||||||| |||||||    
T  4967120 tttttaaaatttaggatacgatacaactaggatacgttaa-aaaaaaattatactaaaacttatatgtatgtaaaacacttgaaaaaaataa 4967030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 17936092 - 17936193
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||| ||||||||||  | |||||  |||| |||||||||||||||| |||||||| ||||||||||||||||||||  || ||||||||||||| |||    
T  17936092 cgggtgcgatacgatattggtacgtagatacacaaaatttttaaaatt-aggatacggtacggctaagatacgttaacctaatatttatactaaaattta 17936190  T
Q  283 tat 285  Q
    |||    
T  17936191 tat 17936193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 25294327 - 25294415
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||  ||||||||  |||| ||||||||    
T  25294327 tttttaaaatttaggatacgatacggttatgatacgttaac-aaaaatttataataaaacttatatgtatgtaaaatacttcaagaaaat 25294415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 4972762 - 4972827
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||||    
T  4972762 tttttaaaatttaggatacgatacaactaggatacgttaacaaaatttttatactaaaacttatat 4972827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 9380384 - 9380451
Alignment:
Q  218 aatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||||| ||| |||| | || |||||||||||||||||||||||| ||||||||||||    
T  9380384 aatttttaaaatttagaatatgatatgacttagatacgttaacaaaaaatttatattaaaacttatat 9380451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 285
Target Start/End: Complemental strand, 49899593 - 49899528
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||||||||||||  | |||||||| ||||| ||| ||||||||||||||||||||    
T  49899593 tttttaaaatttaggatacgataaagttaagatacattaaccaaatatttatactaaaacttatat 49899528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 13644180 - 13644144
Alignment:
Q  248 aagatacgttaacaaaaaatttatactaaaacttata 284  Q
    |||||||||||||||||||||||||||||||||||||    
T  13644180 aagatacgttaacaaaaaatttatactaaaacttata 13644144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 51898494 - 51898581
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaa 263  Q
    |||||||||||||||||||| ||||   ||| || |||||  ||||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  51898494 tacgggtgcgggtacgatacaatacgagtacatggatacgtgaaatttt-aaaatttaggatatgatacggttaagattcgttaacaaa 51898581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 29489047 - 29488948
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    |||| ||||||||||||||| |||||  ||||   |||| | |||||||||||||| | |||| ||||||||||  | |||||||||||| |||||||||    
T  29489047 tacgagtgcgggtacgatacaatacaagtacgcatatacactaaatttttaaaattcatgatatgatacggctagaacacgttaacaaaatatttatact 29488948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 14287448 - 14287365
Alignment:
Q  226 aaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta--tatatgtaaagcacttgaagaaaata 308  Q
    ||||||| ||||||||| ||| |||| ||||||||||||| ||||||| ||||||||  | ||||||||  ||||||||||||||    
T  14287448 aaatttaagatacgata-ggccaagacacgttaacaaaaattttataccaaaacttatttgtatgtaaaatacttgaagaaaata 14287365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 42603219 - 42603286
Alignment:
Q  218 aatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||||||||||| ||||  |||||||| |||| |||   |||||| ||||||||||||    
T  42603219 aatttttaaaatttaggatacgctacgattaagatacattaataaattgtttataataaaacttatat 42603286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 38682637 - 38682698
Alignment:
Q  250 gatacgttaacaaaaaatttatactaaaactt--atatatgtaaagcacttgaagaaaataa 309  Q
    |||||||||||||||| | |||| ||||||||  |||||||||||  |||||||||||||||    
T  38682637 gatacgttaacaaaaattctataataaaacttaaatatatgtaaaatacttgaagaaaataa 38682698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 35160505 - 35160468
Alignment:
Q  247 taagatacgttaacaaaaaatttatactaaaacttata 284  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  35160505 taagatacgtaaacaaaaaatttataataaaacttata 35160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 28658429 - 28658485
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||| |||||||| |||| | | |||||||||||||| ||||||||||| ||||||    
T  28658429 atacggaaaattttcaaaaatcaagatacgatacggctgagatacgttaataaaaaa 28658485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 38949234 - 38949178
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||| |||||||| |||| ||| ||||||||||||||  |||||||||| ||||||    
T  38949234 atacggaaaattttcaaaaattaagatacgatacggctgggatacgttaataaaaaa 38949178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 46285874 - 46285771
Alignment:
Q  174 atacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatac 273  Q
    |||||| || || |||| |||||||||| |||| | |||| | | |||||||||||  || |||||||| |  |||||||||||||||||| |||||||     
T  46285874 atacggatgtggatacggtacgatacaggtacgcggatacacgagatttttaaaatcaag-atacgatatgcttaagatacgttaacaaaatatttatat 46285776  T
Q  274 taaaa 278  Q
    |||||    
T  46285775 taaaa 46285771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 2627766 - 2627884
Alignment:
Q  203 tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttga 300  Q
    |||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||  |||| |    
T  2627766 tacgtggatacacaaattttttaaaatttaggatacgatacggttaagatacgttaacaaaaattttatactaaaacttatatgtatgtaaaatacttca 2627865  T
Q  301 agaaaataagcactaatta 319  Q
    ||||||||| || ||||||    
T  2627866 agaaaataaacattaatta 2627884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 19099674 - 19099827
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||  ||||| |||||||||| || || |||||||||| | |||||  |||||| || |||||||||||||||||||||||||| || |||||    
T  19099674 ctatgaagccttgatacggatacgggtgtggatatgatacgatacgggtacgtagatacgcgaattttttaaaatttaggatacgatacggttatgatac 19099773  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||| ||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  19099774 gttaac-aaaaatttatagtaaaacttatatgtatgtaaaatacttgaagaaaat 19099827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 8229640 - 8229486
Alignment:
Q  167 gatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||| |||||| ||||| ||| |||||||||  | ||||   |||||| |  ||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8229640 gatacggatacgagtgcgagtatgatacgatatgggtacggatatacgcgatttttttaaaatttaggatacgatacgactaagatacgttaataaaaaa 8229541  T
Q  267 tttatactaaaacttata--tatgtaaagcacttgaagaaaataagcactaatta 319  Q
    |||||| |||||||||||  ||||||||  ||||||||||||||| || ||||||    
T  8229540 tttatattaaaacttatatgtatgtaaaatacttgaagaaaataaacattaatta 8229486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 159 - 309
Target Start/End: Original strand, 31113624 - 31113776
Alignment:
Q  159 gaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgtta 258  Q
    ||||||| ||||| |||| |||||| |||||||||| |||  | |||| | |||| | || ||||| ||||||||||||||||||| |  ||||||||||    
T  31113624 gaagcccggatacggatatgggtgcaggtacgatacaatatgggtacgcggatacacgaatttttttaaatttaggatacgatacgtccgagatacgtta 31113723  T
Q  259 acaaaaaatttatactaaaactta--tatatgtaaagcacttgaagaaaataa 309  Q
    ||||||| ||||||||||||||||  | |||| |||  |||||||||||||||    
T  31113724 acaaaaattttatactaaaacttatttgtatggaaaatacttgaagaaaataa 31113776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 34764452 - 34764581
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    |||||| | |||||||| |||||||| |||||| || |||| |||||||| ||||||||||| ||||||||||||||| |||  ||||||||||||||||    
T  34764452 cgggtaaggtacgatacggatacgtggatacgcgaatttttcaaaatttaagatacgatacgtctaagatacgttaac-aaatttttatactaaaactta 34764550  T
Q  283 tata----tgtaaagcacttgaagaaaataa 309  Q
    ||||    ||||||  |||||||||||||||    
T  34764551 tatatatgtgtaaaatacttgaagaaaataa 34764581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 154 - 309
Target Start/End: Original strand, 13406942 - 13407096
Alignment:
Q  154 cctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagata 253  Q
    ||||||||| |||||||| | |||| |||||| ||||||| ||||| | |||||| ||| || || |||||||  |||||||||| |||| |||||||||    
T  13406942 cctatgaagtccagatacgggtacgagtgcggatacgataggatacgggtacgtggatatgcgaattttttaac-tttaggatacaatacagctaagata 13407040  T
Q  254 cgttaacaaaaaatttatactaaaacttatatatgtaaagcacttgaagaaaataa 309  Q
    ||| ||| ||   |||||||||| |||||||||||||||  | |||||||||||||    
T  13407041 cgtcaacgaattttttatactaagacttatatatgtaaaatatttgaagaaaataa 13407096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 183 - 285
Target Start/End: Original strand, 39730539 - 39730641
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||||| |||| |||||||  |  ||||||||||||||||||||||||   || |||| ||||||||||| |||||| |||||||||    
T  39730539 cgggtacgatacgatacaggtacgcgaatacgtgatttttttaaaatttaggatacgatacaattatgatatgttaacaaaaattttataataaaactta 39730638  T
Q  283 tat 285  Q
    |||    
T  39730639 tat 39730641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 39936114 - 39935983
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacg-caaaatttttaaaatttaggatacgatacggctaagata 253  Q
    ||||||||||| | |||  |||||||||||||||||||| |||||   |||| | |||||  ||  |||||||||||||||||||||||| |||||||||    
T  39936114 ctatgaagcccgggtacgaatacgggtgcgggtacgatatgatacgagtacgcggatacgtgaatttttttaaaatttaggatacgatacagctaagata 39936015  T
Q  254 cgttaacaaaaaatttatactaaaacttatat 285  Q
    |||| |||||   |||||||||||||| ||||    
T  39936014 cgttgacaaactttttatactaaaactcatat 39935983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 7057435 - 7057346
Alignment:
Q  226 aaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcac-ttgaagaaaataagca 312  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||||||||| |||||  ||||||||  || ||||||||||||||||    
T  7057435 aaatttaggatacgatacggttaagatacgttagcaaaaattttatactaaaatttatatgtatgtaaaatactttgaagaaaataagca 7057346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 26565293 - 26565191
Alignment:
Q  180 gtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaac 279  Q
    ||||||||| ||||| |||| |||||  | |||| | || |||| ||||||||||||||||||| | ||||||||||||||||||| || ||||||||||    
T  26565293 gtgcgggtaagatacaatacggatacacggatacacgaatttttaaaaatttaggatacgatacagttaagatacgttaacaaaaatttaatactaaaac 26565194  T
Q  280 tta 282  Q
    |||    
T  26565193 tta 26565191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 39329845 - 39329756
Alignment:
Q  195 gatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||| | | |||| |||||||| |||| |||| |||||||||||||||| |||||||||||| |  |||||||||||||||||||    
T  39329845 gatacagatatgcggatacacaaaatttataaa-tttaagatacgatacggctaaaatacgttaacaagatttttatactaaaacttatat 39329756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 16755761 - 16755826
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||  ||||||||||   |||||||||||||||||||||||||||||||| ||||||    
T  16755761 tttttaaaatttgagatacgatacaattaagatacgttaacaaaaaatttatactaaaatttatat 16755826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 32076157 - 32076286
Alignment:
Q  156 tatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacg 255  Q
    |||||||||| |||| |||||||| |||||||| ||||||||||  |||   | ||||    | ||||| |||||||||||| |||||| ||||||||||    
T  32076157 tatgaagcccggatatagatacggatgcgggtatgatacgatacgaatatacggatacatgtatttttttaaatttaggatatgatacgactaagatacg 32076256  T
Q  256 ttaacaaaaaatttatactaaaacttatat 285  Q
    || | |||||| ||||||||||||| ||||    
T  32076257 ttgaaaaaaaaattatactaaaactcatat 32076286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 36907067 - 36906974
Alignment:
Q  217 aaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaataag 310  Q
    ||||||| ||||||||||| |  ||||||||||||||||||||||||   |||||||||||| ||||||  |||||||   |||||||||||||||    
T  36907067 aaattttaaaaatttaggaca--atacggctaagatacgttaacaaattttttatactaaaatttatatgcatgtaaaattcttgaagaaaataag 36906974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 7732641 - 7732574
Alignment:
Q  217 aaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||||||||||| |||||||||||||| ||| ||| ||||| |||| ||||||||||||| ||||||    
T  7732641 aaatttttaaaattcaggatacgatacggttaatatatgttaa-aaaatatttatactaaaatttatat 7732574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 286
Target Start/End: Original strand, 8802512 - 8802566
Alignment:
Q  232 aggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatata 286  Q
    ||||||||||||   ||| |||||||||||||||| |||||||||||||||||||    
T  8802512 aggatacgatacaaataaaatacgttaacaaaaaaattatactaaaacttatata 8802566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 27925912 - 27925816
Alignment:
Q  218 aatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagca 312  Q
    ||||||| ||||| || |||||| || |||||||||||||||||||   |||| | |||||||||||  ||||||||  ||||||| ||||||||||    
T  27925912 aattttttaaattgagaatacgacactgctaagatacgttaacaaattttttacaataaaacttatatgtatgtaaaatacttgaaaaaaataagca 27925816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 239
Target Start/End: Original strand, 29230720 - 29230804
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacg 239  Q
    ||||||||||| | |||| ||| ||||||||||| ||||| |||| | |||| | |||||| || ||||| ||||||||||||||    
T  29230720 ctatgaagccccgttacaaatatgggtgcgggtatgatacaatacgggtacgcggatacgcgaatttttttaaatttaggatacg 29230804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 18001525 - 18001587
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    ||||| ||| ||||||||| | | ||||||||||||||| |||||||||| |||||| |||||    
T  18001525 atacggaaattttttaaaaatcaagatacgatacggctaggatacgttaataaaaaaattata 18001587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 42455182 - 42455124
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatt 268  Q
    ||||| |||| |||||||||||| |||||||| ||||| |||||| |||| ||||||||    
T  42455182 atacggaaaaattttaaaatttaagatacgatgcggctgagatactttaataaaaaatt 42455124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 26794011 - 26794076
Alignment:
Q  201 gatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||||| |||||| |||| |||||||| | | ||||||||||||||  |||||||||| ||||||    
T  26794011 gatacgtcaatacggaaaaattttaaaaatcaagatacgatacggctgggatacgttaataaaaaa 26794076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 31210550 - 31210603
Alignment:
Q  226 aaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaac 279  Q
    |||||||||||||||||   || |||||| ||||||||||||||||| ||||||    
T  31210550 aaatttaggatacgatatatcttagatacattaacaaaaaatttatagtaaaac 31210603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 29230799 - 29230857
Alignment:
Q  250 gatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    ||||||||||||||| ||||||| |||||||||||  ||||||||  |||||||||||||    
T  29230799 gatacgttaacaaaa-atttataataaaacttatatgtatgtaaaatacttgaagaaaat 29230857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 40837408 - 40837306
Alignment:
Q  183 cgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta 282  Q
    ||||||||||||||||| |||| || ||||  |||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  40837408 cgggtacgatacgatacggatatgtaaatatacaaatttttttaaatttaggatacgatacggttaagatacattaacaaaaaatttatactaaaactta 40837309  T
Q  283 tat 285  Q
    |||    
T  40837308 tat 40837306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 43728423 - 43728256
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| |||||||||||| |||| |||| |||| ||||| | |||||| |||||| || ||||| |||||||| |||||||||||||| |||||    
T  43728423 ctatgaagcccggatacagatacgagtgcaggtaggatatgatacgggtacgtggatacgcgaatttttttaaatttagaatacgatacggctaggatac 43728324  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataagcactaattac 320  Q
    ||| |||||   ||||||||||| ||||||  ||||| ||  |||| |||||||||| |||| |||||    
T  43728323 gttgacaaattttttatactaaatcttatatgtatgtgaaatacttaaagaaaataaacactgattac 43728256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 307
Target Start/End: Original strand, 42040084 - 42040236
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||  ||||| ||||||||||||||| ||||||||||| | || | | ||| ||| | ||||| |||||||||||||||||||| || |||||    
T  42040084 ctatgaagccacgatacggatacgggtgcgggtgcgatacgatacgggtatgcggatatgcatatttttttaaatttaggatacgatacggttaggatac 42040183  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||| ||||||||||| |||||||||||  ||||||||  |||||||||||||    
T  42040184 gttaac-aaaaatttataataaaacttatatgtatgtaaa-tacttgaagaaaat 42040236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 43495543 - 43495641
Alignment:
Q  187 tacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||| ||||||| || | ||||||||| | ||||||||||||| ||||  |||||| ||||||||||||||||||| |||||||||||||||||||    
T  43495543 tacgatatgatacaggtatgcgaatacgcagactttttaaaatttaagatataatacggttaagatacgttaacaaaaattttatactaaaacttatat 43495641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 309
Target Start/End: Original strand, 25310636 - 25310792
Alignment:
Q  155 ctatgaagcccagatacagatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatac 254  Q
    ||||||||||| ||||  |||| |||||| ||||||||||||||  |  ||  | |||| | || ||||| |||||||||||||||||| | ||||||||    
T  25310636 ctatgaagcccggataatgatatgggtgccggtacgatacgatatgggcacacggatactcgaatttttttaaatttaggatacgatacagttaagatac 25310735  T
Q  255 gttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||||||||||  |||||||||||||||||  ||||||||  | |||||||||||||    
T  25310736 gttaacaaaaatattatactaaaacttatatgtatgtaaaatatttgaagaaaataa 25310792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 22542585 - 22542717
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    ||||||||||||||||||||||||| |||||| |  ||||  ||  |||| |||||||| |||||||| ||||||||||| |||||||||||| |||| |    
T  22542585 tacgggtgcgggtacgatacgatac-gatacgag--tacgtgaatatttttaaatttagaatacgatatggctaagatacattaacaaaaaatatataat 22542681  T
Q  275 aaaactt-atatatgtaaagcacttgaagaaaataa 309  Q
    ||||||| || ||| ||||  |||||||||||||||    
T  22542682 aaaacttaatgtatataaaatacttgaagaaaataa 22542717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 48138904 - 48138805
Alignment:
Q  185 ggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata 284  Q
    ||||||||||||||| | |||||  |||||| ||| ||||||||||  ||| |||||||||||||||||| ||||||||| ||||||||||||| |||||    
T  48138904 ggtacgatacgatacgggtacgtagatacgcgaaaattttaaaattc-ggaaacgatacggctaagatacattaacaaaatatttatactaaaatttata 48138806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 9229313 - 9229387
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||||| |||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  9229313 atacgcgaaatttttaaaatt-atgatacgatacggctaagatacgttaacaaattatttatactaaaatttatat 9229387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 44797877 - 44797947
Alignment:
Q  217 aaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatatat 287  Q
    |||||||||||||||||||||| ||||  ||||||||||||||||||| |||| |||||||| ||||||||    
T  44797877 aaatttttaaaatttaggataccatacatctaagatacgttaacaaaatatttctactaaaatttatatat 44797947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 309
Target Start/End: Complemental strand, 48153326 - 48153236
Alignment:
Q  221 ttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    ||||||||||||||||| |||||||| || ||| ||||||||||| |||||||||||| |||||  ||||||||  |||||||| ||||||    
T  48153326 ttttaaaatttaggatatgatacggccaaaatatgttaacaaaaattttatactaaaatttatatgtatgtaaaatacttgaagtaaataa 48153236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 264
Target Start/End: Original strand, 46191908 - 46191996
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaa 264  Q
    |||| |||||||||||||||||||  |||| | | |||| | |||||||||||| ||||||||| ||||  |||||||||||||||||||    
T  46191908 tacgagtgcgggtacgatacgatatggatatgcggatacacgaaatttttaaaa-ttaggatacaatacaactaagatacgttaacaaaa 46191996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 47278400 - 47278293
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatact 274  Q
    ||||||||| ||||||||| |||||| |||   | ||||  | || ||||||||||||||| |  || | |||| |||||||||||||||||||| ||||    
T  47278400 tacgggtgctggtacgatatgatacaaatatacggatacatagaaattttaaaatttaggagataatgctgctacgatacgttaacaaaaaatttctact 47278301  T
Q  275 aaaactta 282  Q
    ||||||||    
T  47278300 aaaactta 47278293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 45492597 - 45492514
Alignment:
Q  226 aaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta--tatatgtaaagcacttgaagaaaata 308  Q
    ||||||||| ||||||| ||| |||| || |||||||||||||||||| ||||||||  | ||||||||  ||||||||||||||    
T  45492597 aaatttagggtacgata-ggccaagacactttaacaaaaaatttataccaaaacttatttgtatgtaaaatacttgaagaaaata 45492514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 24700028 - 24699962
Alignment:
Q  218 aatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    ||||||||||||| |||||| ||||||   |||||||||||| |||| ||||||||||||| ||||||    
T  24700028 aatttttaaaatt-aggatatgatacgttcaagatacgttaaaaaaatatttatactaaaatttatat 24699962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Complemental strand, 3393572 - 3393522
Alignment:
Q  216 aaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaa 266  Q
    ||||||||||||||| ||||||||||||||||  ||||| | |||||||||    
T  3393572 aaaatttttaaaattcaggatacgatacggctgtgatacttcaacaaaaaa 3393522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 21180387 - 21180325
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttata 272  Q
    ||||| |||| ||| |||||||| |||||||||||||| ||| ||||||| |||||| |||||    
T  21180387 atacggaaaactttcaaaatttaagatacgatacggctgagaaacgttaataaaaaaattata 21180325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 45647920 - 45648008
Alignment:
Q  220 tttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaactta--tatatgtaaagcacttgaagaaaat 307  Q
    ||||| |||||||||||||| ||| | || ||||| | ||| ||||||||||| |||||||||  ||||||||||  |||||||||||||    
T  45647920 ttttttaaatttaggatacggtacagttaggatacatgaac-aaaaatttataataaaacttatctatatgtaaaatacttgaagaaaat 45648008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 7858285 - 7858214
Alignment:
Q  238 cgatacggctaagatacgttaacaaaaaatttatactaaaacttatat--atgtaaagcacttgaagaaaat 307  Q
    ||||| |||| |||||||||||||||   |||||| ||||||||||||  |||||||  |||||||||||||    
T  7858285 cgatatggcttagatacgttaacaaatcttttatattaaaacttatatgcatgtaaaatacttgaagaaaat 7858214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 9102 - 8997
Alignment:
Q  180 gtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaac 279  Q
    |||||| ||| ||| |||| |||||||  |||| || |||||||||||||||||||||||||| || ||| |||| |||||||||  |||||| ||||||    
T  9102 gtgcggatactataagatatagatacgcaaatatgcgaaatttttaaaatttaggatacgataaggttaatatacattaacaaaatttttatattaaaac 9003  T
Q  280 ttatat 285  Q
    ||||||    
T  9002 ttatat 8997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 322
Target Start/End: Original strand, 38249 - 38363
Alignment:
Q  210 atacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaat 307  Q
    |||||| || ||||| ||||| ||||||  ||||||||||||||||||||||||   |||||| |||||||||||  ||||||||  |||||||||||||    
T  38249 atacgcgaatttttttaaattaaggataaaatacggctaagatacgttaacaaattttttatattaaaacttatatgtatgtaaaatacttgaagaaaat 38348  T
Q  308 aagcactaattaccc 322  Q
    || || | |||||||    
T  38349 aaacattgattaccc 38363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 6459 - 6367
Alignment:
Q  218 aatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttata--tatgtaaagcacttgaagaaaataa 309  Q
    |||||| |||||||||||||||||||  ||||||||||||||  |||||||||||||||||| ||||  ||||||||  ||||||| |||||||    
T  6459 aattttcaaaatttaggatacgatacaactaagatacgttaa-taaaaatttatactaaaacatatatgtatgtaaaatacttgaacaaaataa 6367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 53973 - 53892
Alignment:
Q  203 tacgtgaatacgcaaaatttttaaaatttaggatacgatacggctaagatacgttaacaaaaaatttatactaaaacttatat 285  Q
    |||| ||||||||||| ||||| ||||| |||||||||||||| ||||||| || ||||||  ||||||||||||| ||||||    
T  53973 tacgcgaatacgcaaatttttttaaatt-aggatacgatacggttaagatatgtcaacaaattatttatactaaaatttatat 53892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 5813 - 5917
Alignment:
Q  175 tacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaat-ttaggatacgatacggctaagatacgttaacaaaaaatttatac 273  Q
    |||| |||||||||||||| ||||| | |||||| |||| |||   || |||||| |||| |||||||| |||||||||| | ||||||||| |||||||    
T  5813 tacgagtgcgggtacgatatgatacgggtacgtggatacacaa---ttctaaaatcttagaatacgatatggctaagatatggtaacaaaaattttatac 5909  T
Q  274 taaaactt 281  Q
    ||||||||    
T  5910 taaaactt 5917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 8388 - 8274
Alignment:
Q  173 gatacgggtgcgggtacgatacgatacagatacgtgaatacgcaaaatttttaaaa---tttaggatacgatacggctaagatacgttaacaaaaaattt 269  Q
    ||||||||||||||||||||||||||| |||||| | |||| |    |||||   |   |||| |||||||||||| ||||||||||||||| |||||||    
T  8388 gatacgggtgcgggtacgatacgatacggatacgcggatacacgtttttttttttagggtttaagatacgatacggttaagatacgttaaca-aaaattt 8290  T
Q  270 atactaaaacttatat 285  Q
    ||| ||||| ||||||    
T  8289 ataataaaagttatat 8274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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