View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5922_low_1 (Length: 534)
Name: NF5922_low_1
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 154 - 525
Target Start/End: Complemental strand, 35710966 - 35710592
Alignment:
| Q |
154 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataacatacgctaacagtaggaaaagctt--aatatcttataatgatgatgtatga |
251 |
Q |
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| T |
35710966 |
aagcaacttattcatggaacatgatattaatcatgttttagtgcataatatacac-aacagtaagaaa-gcttctaatatcttataatgatgatgtatga |
35710869 |
T |
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| Q |
252 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgt---aaaaaagcatcacaactttcttcattatctt |
348 |
Q |
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| T |
35710868 |
acaagctttgataaattcaaaagtgcatattttgcacatttgggattctgctcctgagattcacgtgtaaaaaaagcatcacaactttcttctttatctt |
35710769 |
T |
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| Q |
349 |
ttatcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactatttagccttaccaaacattgacatatcat |
448 |
Q |
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| T |
35710768 |
ttttcgaattttttgttccaatgtggtattaagctaattgatgctaagtccggtcgtttcgcgtgacactattttgccttaccaaacattgacatatcat |
35710669 |
T |
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| Q |
449 |
atcacatgcagttggtccaagttattcttttcgtttcatgtcaggttgtattgcataataccagctgctgatgatgt |
525 |
Q |
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| T |
35710668 |
atcacatgcaattggtccaagttattcttttcgtttcatgtcaggttgtattgcataataccagctgctgatgatgt |
35710592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 47104497 - 47104576
Alignment:
| Q |
65 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagagaaaggggataaaataaatcttgctt |
144 |
Q |
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| T |
47104497 |
aacttcaaagacttaaaatttatttcaattattctttaattttgttgatcaagaaaaagaggatactataaaacttgctt |
47104576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 47104392 - 47104443
Alignment:
| Q |
19 |
acaactccattcttacacaaa-gagagaccatggtatgaaaataagaaactt |
69 |
Q |
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| T |
47104392 |
acaactccattcttatacaaaagagagaccatggtataaaaataagaaactt |
47104443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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