View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5922_low_3 (Length: 492)
Name: NF5922_low_3
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 43 - 481
Target Start/End: Original strand, 4215694 - 4216136
Alignment:
| Q |
43 |
acaatctctctcttaacttatatatattcttgagctgtaagagtctgcagaaatctcggaaggtattttgaataaaaagaagtcactcaaattgtttgat |
142 |
Q |
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| T |
4215694 |
acaatctctctcttaacttatatatattcttgagctgtaagagtctgcagaaatctcggaaggtattttgaataaaaagaagtcactcaaattgtttgat |
4215793 |
T |
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| Q |
143 |
cgtgtagtgtagagttgtaaaatttgatgaagttgaaagtagtcaaacttgtgccttat-------gagtcaattcttaccaagttaatctacctcttat |
235 |
Q |
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| T |
4215794 |
cgtgtagtgtagagttgtaaaatttgatgaagttaaaaggagtcaaacttgtgccttatatagtatgagtcaattcttaccaagttaatctacctcttat |
4215893 |
T |
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| Q |
236 |
cttgaaatgtgattttatttgatcttgattacactaagtttctacatcgacctaatcacatattgatctacatttgctttaacgtcaagaaaactgaata |
335 |
Q |
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| T |
4215894 |
cttgaaatgtgattttatgtgatcttgattacactaagtttctacatcgacctaatcacatattgatctacatttgctttaacgtcaagaaaactgaata |
4215993 |
T |
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| Q |
336 |
ctccatcatcaaaaaagaacactgaatacttgtgcttaattttttactgattggtgggattttcagtagcagcatagtgaagatgtcacagcttatgctt |
435 |
Q |
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| T |
4215994 |
ctccatcatc---aaagaacactgaatacttgtgcttaattttttactgattggtgggattttcagtagcagcatagtgaagatgtcacagcttatgctt |
4216090 |
T |
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| Q |
436 |
ttgcatgctcttctcctgatccagaaaaacaaaaattatgagtatt |
481 |
Q |
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| T |
4216091 |
ttgcatgctcttctcctgatccagaaaaacaaaaattatgagtatt |
4216136 |
T |
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