View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5922_low_4 (Length: 448)
Name: NF5922_low_4
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 179 - 423
Target Start/End: Complemental strand, 31420618 - 31420374
Alignment:
| Q |
179 |
taagtagaagaaatttacaagtttggttttgcttccactttcagaaactgcaggagttgaatttccagaactagtctcttgaaaatccatcatttttctc |
278 |
Q |
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| T |
31420618 |
taagtagaagaaatttacaagtttggttttgcttccactttcagaaactgcaggagttgaatttccagaactagtctcttgaaaatccatcatttttctc |
31420519 |
T |
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| Q |
279 |
tttttaccttcatgatgaactttattttcttcttgaaaaattgttggaagtgaaagttgaactgcattgtgattttgattattgacatgatggacaagac |
378 |
Q |
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| T |
31420518 |
tttttaccttcatgatgaactttattttcttcttgaaaaattgttggaagtgaaagttgaactgcattgtgattttgattattgacatgatggacaagac |
31420419 |
T |
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| Q |
379 |
catgaaaattctcttccaagtttcttggaaacacatgttcttgtt |
423 |
Q |
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| T |
31420418 |
catgaaaattctcttccaagtttcttggaaacacatgttcttgtt |
31420374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 31420720 - 31420654
Alignment:
| Q |
85 |
caccactctgaaattaatcatagaaaaataacaaaaccagtttataatttaatttcatcacaatcac |
151 |
Q |
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| T |
31420720 |
caccactctgaaattaatcatagaaaaataacaaaaccagtttataatttaatttcatcacaatcac |
31420654 |
T |
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