View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5922_low_7 (Length: 260)
Name: NF5922_low_7
Description: NF5922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5922_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 54 - 243
Target Start/End: Original strand, 10593441 - 10593630
Alignment:
| Q |
54 |
atgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttact |
153 |
Q |
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| T |
10593441 |
atgtttcagtttagacatgtcgtctttgatcacattttcctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttact |
10593540 |
T |
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| Q |
154 |
catcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
243 |
Q |
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| T |
10593541 |
catcctgtgtaatgaaaagttgggcataattgtgtctcagtgtaatttttttgatcttttaaggcattgtgggtctagctgttacctatg |
10593630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 54 - 135
Target Start/End: Original strand, 14375605 - 14375686
Alignment:
| Q |
54 |
atgtttcagtttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
135 |
Q |
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| T |
14375605 |
atgtttccgtttagatatgttgtctttgatcacatttgccttttctttgatattcttgatatcgattccacctggaatcata |
14375686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 41436394 - 41436323
Alignment:
| Q |
64 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
135 |
Q |
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| T |
41436394 |
ttagatatgttgtcttccatcacatttgccttttccttgatattcttgatatcgattccacctggaatcata |
41436323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 41449607 - 41449536
Alignment:
| Q |
64 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcata |
135 |
Q |
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| T |
41449607 |
ttagatatgttgtcttccatcacgtttgccttttccttgatattcttgatatcgattccacctggaatcata |
41449536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 14238523 - 14238453
Alignment:
| Q |
64 |
ttagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatcgattccacctggaatcat |
134 |
Q |
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| T |
14238523 |
ttagatatgttgtcttccatcatatttgccttttccttggcattcttgatatcgattccacctggaatcat |
14238453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 14376914 - 14376964
Alignment:
| Q |
193 |
gtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
243 |
Q |
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| T |
14376914 |
gtgtcatttttctgatttttgaaggcattgctggtctagctgttacctatg |
14376964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 41436230 - 41436186
Alignment:
| Q |
199 |
tttttctgatctttgaaggcattgtgggtctagctgttacctatg |
243 |
Q |
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| T |
41436230 |
ttttcctgatttttgaaggcattgctggtctagctgttacctatg |
41436186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 32119174 - 32119103
Alignment:
| Q |
65 |
tagacatgtcgtctttgatcacatttgcctttactttgatattcttgatatc-gattccacctggaatcata |
135 |
Q |
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| T |
32119174 |
tagatatgttgtctttgatcagatttgtcttttctttgatattcttgatatcagaatccacctggaatcata |
32119103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 214
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
| Q |
130 |
atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga |
214 |
Q |
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| T |
32119075 |
atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga |
32118988 |
T |
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