View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923-Insertion-1 (Length: 852)
Name: NF5923-Insertion-1
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 274 - 766
Target Start/End: Original strand, 1848313 - 1848791
Alignment:
| Q |
274 |
atcattcataccatccttccatgatccactat---------caaaccattttccgcatatatttttcatgacttttaatgtataccttctcactttacga |
364 |
Q |
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| T |
1848313 |
atcattcataccatccttccatgatccactattaatctcatcaaaccattttcctcatatatttttcatgacttttaatgtataccttctcactttacga |
1848412 |
T |
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| Q |
365 |
atctattaacctatgtgatctgacacttctgatccaagaagtttgtttgtttggtgtctctgacacaacacctacatatgattacttcaatcaattaaat |
464 |
Q |
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| T |
1848413 |
atctatt--cctatgtgatctgacacttctgatccaagaagtgtgtttgtttggtgtgtctgacacgacacctacatatgattacttcaatcaattaaat |
1848510 |
T |
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| Q |
465 |
actagtgtcaacatgtcactgta----atatacgttgttagtgtctgtaaatcttttctgttttcaggcgctggatttcttagctgagaagcttctcatt |
560 |
Q |
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| T |
1848511 |
actagtgtcaacatgtcactgtaatatatatacgttgttagtgtctgtaaatcttttgtgttttcaggcgctggatttcttagctgagaagcttctcatt |
1848610 |
T |
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| Q |
561 |
gaagtcttaattttcatgattttctttgttagtttctctttggtttttatgtttagatgctattaattcaagttaatctttgatttgatcttttcttcaa |
660 |
Q |
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| T |
1848611 |
gaagtctta---------attttctttgttagtttctctttgg-ttttatgtttagatgctattaattcaagtta------------atcttttcttcaa |
1848688 |
T |
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| Q |
661 |
tgtaggccatccaatcacttcaaattgttcaatgatttccctcttgtcaaactggaattataaaatcttcctcaaactcacagtgctgcgtttagagtta |
760 |
Q |
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| T |
1848689 |
tgtaggccatccaatcacttcaaattgttcaatgatttccctcttgtcaaact-gaattat-aaatcttcctc-aactcacagtgctgcgtttagagtta |
1848785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 1848054 - 1848253
Alignment:
| Q |
7 |
caccgagcacaccacgtttcggcgttgcttcctgcatctcactactttcacataagagttagttacgactcgtcgcatttcatttcattgagtctatata |
106 |
Q |
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| T |
1848054 |
caccgagcacaccacgtttcggcgttgcttcctgcatctcaccactttcacaaaagagttagttacgactcgtcgcatttcatttcattgagtctatata |
1848153 |
T |
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| Q |
107 |
tatgtaccaaaatttacaaatgtaaggaaccaaatttgaccaaattcatatacttaaaattcaaaccaaacattacaattcaaatggcttctactttgaa |
206 |
Q |
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| T |
1848154 |
tatgtaccaaaatttacaaatgtaaggaaccaaatttgaccaaattcatatacttcaaattcaaaccaaacataacaattcaaatggcttctactttgaa |
1848253 |
T |
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