View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923-Insertion-2 (Length: 842)

Name: NF5923-Insertion-2
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923-Insertion-2
NF5923-Insertion-2
[»] chr7 (11 HSPs)
chr7 (9-771)||(33815521-33816296)
chr7 (784-826)||(33816408-33816450)
chr7 (498-565)||(33174164-33174232)
chr7 (505-568)||(42710603-42710667)
chr7 (505-567)||(33326526-33326589)
chr7 (489-527)||(4998928-4998966)
chr7 (273-329)||(45429314-45429370)
chr7 (274-336)||(28243153-28243215)
chr7 (274-331)||(8770282-8770339)
chr7 (277-334)||(21222867-21222924)
chr7 (509-565)||(36655618-36655675)
[»] chr1 (20 HSPs)
chr1 (457-565)||(42400954-42401064)
chr1 (457-565)||(37583111-37583220)
chr1 (469-565)||(33780623-33780721)
chr1 (471-550)||(4659003-4659083)
chr1 (337-455)||(42483627-42483745)
chr1 (476-527)||(8514563-8514614)
chr1 (341-455)||(42401085-42401199)
chr1 (277-334)||(47210106-47210163)
chr1 (498-565)||(32544901-32544969)
chr1 (259-334)||(42523273-42523348)
chr1 (277-331)||(22336422-22336476)
chr1 (603-645)||(33259658-33259700)
chr1 (603-645)||(33279817-33279859)
chr1 (469-550)||(6268197-6268278)
chr1 (274-331)||(41970594-41970651)
chr1 (507-565)||(7712336-7712396)
chr1 (274-334)||(51587375-51587435)
chr1 (376-455)||(33780511-33780590)
chr1 (603-645)||(42400866-42400908)
chr1 (600-645)||(19512748-19512793)
[»] chr3 (7 HSPs)
chr3 (469-561)||(24744484-24744578)
chr3 (457-570)||(40485154-40485269)
chr3 (471-558)||(30285083-30285172)
chr3 (603-645)||(7885815-7885857)
chr3 (471-563)||(51463539-51463633)
chr3 (358-455)||(40485033-40485130)
chr3 (338-408)||(24744340-24744410)
[»] chr8 (7 HSPs)
chr8 (459-527)||(1334114-1334182)
chr8 (475-565)||(3348068-3348157)
chr8 (470-527)||(9415522-9415582)
chr8 (255-329)||(40957125-40957199)
chr8 (285-328)||(25487385-25487428)
chr8 (280-334)||(30075763-30075817)
chr8 (277-334)||(10172473-10172530)
[»] chr2 (5 HSPs)
chr2 (459-527)||(21455147-21455215)
chr2 (505-565)||(39445799-39445860)
chr2 (279-336)||(40288177-40288234)
chr2 (469-520)||(39401690-39401741)
chr2 (604-645)||(45154175-45154216)
[»] chr4 (11 HSPs)
chr4 (457-527)||(17694379-17694449)
chr4 (274-338)||(33129788-33129852)
chr4 (600-659)||(46061631-46061690)
chr4 (282-326)||(1820216-1820260)
chr4 (600-644)||(40946442-40946486)
chr4 (590-645)||(17694257-17694312)
chr4 (285-331)||(55882948-55882994)
chr4 (288-337)||(2742184-2742233)
chr4 (274-331)||(31053041-31053098)
chr4 (502-565)||(41248286-41248351)
chr4 (505-565)||(45047237-45047298)
[»] chr6 (7 HSPs)
chr6 (464-565)||(12975436-12975538)
chr6 (457-522)||(31766219-31766284)
chr6 (603-659)||(33099726-33099782)
chr6 (277-331)||(8514152-8514206)
chr6 (338-409)||(33099518-33099589)
chr6 (505-565)||(24141324-24141386)
chr6 (273-334)||(10153212-10153273)
[»] chr5 (10 HSPs)
chr5 (274-331)||(14717337-14717394)
chr5 (273-334)||(19117275-19117336)
chr5 (274-331)||(32892008-32892065)
chr5 (507-565)||(4942534-4942594)
chr5 (420-455)||(1309766-1309801)
chr5 (420-455)||(4747073-4747108)
chr5 (603-645)||(8433954-8433996)
chr5 (603-645)||(33494951-33494993)
chr5 (285-331)||(41579268-41579314)
chr5 (505-565)||(36974250-36974310)
[»] scaffold0578 (1 HSPs)
scaffold0578 (600-645)||(10145-10190)


Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 9 - 771
Target Start/End: Original strand, 33815521 - 33816296
Alignment:
Q  9 atcttgattcagagcttgcaccatggtgaaagctactttctggtacttgccacataccatcatacatcttcaaatcaattgtttctattctaaatattgt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815521 atcttgattcagagcttgcaccatggtgaaagctactttctggtacttgccacataccatcatacatcttcaaatcaattgtttctattctaaatattgt 33815620  T
Q  109 gttgtcacatcttaatcattgttcttcattttcttttcaatccttatgtctactgatttgaaaattaattcacacacatatgcacatatgtgtaggtaca 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  33815621 gttgtcacatcttaatcattgttctttattttcttttcaatccttatgtctactaatttgaaaattaattcacacacatgtgcacatatgtgtaggtaca 33815720  T
Q  209 atcattttaaaatgtatttaacaatttgttgttacatcaatcaattaatatgaaaatcacatagattttcatattcattaattgatgtgacaataaatta 308  Q
    |||||||||||||||||| ||| ||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  33815721 atcattttaaaatgtattcaacgatttgttgtcacatcaataaatgaatatgaaaatcacatagattttcgtattcattaattgatgtgacaatacatta 33815820  T
Q  309 tttgatgtatgtgtaaaataattgtatacttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttt 408  Q
    ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||    
T  33815821 tttgatgcatgtgtaaaataattgtatatttagagcatccataatggaaaccctaaatttagagttcttaaactggtctcacgtgaacacgtcactcttt 33815920  T
Q  409 aatannnnnnnaataacagtatctaataagcactcaatcactccaata-------------------tctaaaccggttccaccactaactcttcatctt 489  Q
    ||||       |||||||||||||||||| |||||||||||| |||||                   ||||||||||| ||||||||||||||||||| |    
T  33815921 aataatattttaataacagtatctaataaacactcaatcactacaatagagatcctctaacaaaatgtctaaaccggtcccaccactaactcttcatcat 33816020  T
Q  490 ttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgagatcctctaggtcaccc-nnnnnnn 587  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||| |||  |||       |||||            
T  33816021 ttacatttcaacaatacaacgattattttaataaaaagtagtgtggagcccacttaagaatggggttttaaatga-ttcc-----aacacccaaaaaaaa 33816114  T
Q  588 nntctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatcttacaaaacatattaattaaactcttaaaaa 687  Q
      |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  33816115 aatctccaataaagatacctattaggtgccggatcttaaatgatgaagacctcaccatatgagatggtcttacaaaacatattaattaaactcttgaaaa 33816214  T
Q  688 tatcgagcatatcatacacactataaatgtaaaacaattttacacatatatccaattaaacaattttacacgtatatctaaatt 771  Q
    |||||||||||||||||| || |||||||||||||||||||||||  ||||||||  |||||||||||||| ||||||||||||    
T  33816215 tatcgagcatatcatacatacaataaatgtaaaacaattttacac--atatccaagaaaacaattttacacatatatctaaatt 33816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 784 - 826
Target Start/End: Original strand, 33816408 - 33816450
Alignment:
Q  784 ctacttaggatttatctactcctatattctaatcttgtcatat 826  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  33816408 ctacttaggatttatctactcctatgttctaatcttgtcatat 33816450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 565
Target Start/End: Original strand, 33174164 - 33174232
Alignment:
Q  498 caacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||||||||||||||||||||| |||||| | ||||| | |||||||||||||  |||||||||||||    
T  33174164 caacaatacaatgattattttaagaaaaagtattgtggggcccacttaagaatgatgtcttaagtgaga 33174232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 568
Target Start/End: Original strand, 42710603 - 42710667
Alignment:
Q  505 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgagatcc 568  Q
    ||||||||||||||| |||||||  |||||| || ||||||||||||| ||||||||||||||||    
T  42710603 acaatgattattttattaaaaagttgtgtggggttcacttaagaatggagtcttaagtgagatcc 42710667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 505 - 567
Target Start/End: Original strand, 33326526 - 33326589
Alignment:
Q  505 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgagatc 567  Q
    ||||||||||||||||| |||||  ||||||| ||||||||||| || ||||||||||||||||    
T  33326526 acaatgattattttaatgaaaagttgtgtggaatccacttaagattgaggtcttaagtgagatc 33326589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 489 - 527
Target Start/End: Complemental strand, 4998966 - 4998928
Alignment:
Q  489 tttacattccaacaatacaatgattattttaataaaaag 527  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4998966 tttacattccaacaatacaataattattttaataaaaag 4998928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 45429314 - 45429370
Alignment:
Q  273 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 329  Q
    |||||||||||||||||||||  || ||| |||| |||||||| |||||||||||||    
T  45429314 attttcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 28243215 - 28243153
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 336  Q
    ||||||||||||||||||||| |||||| | || ||| ||||  ||| |||||||||||||||    
T  28243215 ttttcatattcattaattgatatgacaacacatcattggatgcgtgtttaaaataattgtata 28243153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 8770282 - 8770339
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||| |||||||||||||||||   ||||||  || ||||||||||||||||    
T  8770282 ttttcatatttattaattgatgtgacaacttattattgaatatatgtgtaaaataatt 8770339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 21222867 - 21222924
Alignment:
Q  277 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    ||||||||||||||||||||| ||| | || ||| ||| |||||||||||| ||||||    
T  21222867 tcatattcattaattgatgtgtcaacatatcattagatttatgtgtaaaatgattgta 21222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 36655675 - 36655618
Alignment:
Q  509 tgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||||||||||| ||||| | |||||| |||||||||| ||| ||||||||||||||    
T  36655675 tgattattttaatcaaaagtaatgtggaatccacttaagcatgaggtcttaagtgaga 36655618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 1e-31; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 457 - 565
Target Start/End: Complemental strand, 42401064 - 42400954
Alignment:
Q  457 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaat-ggggt 554  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||    
T  42401064 tctaaatcggtcccaccacgaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtggggtccacttaagaataagggt 42400965  T
Q  555 cttaagtgaga 565  Q
    |||||||||||    
T  42400964 cttaagtgaga 42400954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 457 - 565
Target Start/End: Original strand, 37583111 - 37583220
Alignment:
Q  457 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtc 555  Q
    |||||| ||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||  |||||||||| |||||||||    
T  37583111 tctaaatcggttccaccactgactcttcatcatttacatttcaacgatacaatgattattttaataaaaagtagtgtgaggtccacttaaaaatggggtc 37583210  T
Q  556 ttaagtgaga 565  Q
    ||||||||||    
T  37583211 ttaagtgaga 37583220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 469 - 565
Target Start/End: Original strand, 33780623 - 33780721
Alignment:
Q  469 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatgg-ggtcttaagtgaga 565  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||    
T  33780623 ccactactaattcttcatcatttacgttccaacaatacaatgattattttaatgaaaagtagtgtggagtccacttaagaatggaagtcttaagtgaga 33780721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 550
Target Start/End: Original strand, 4659003 - 4659083
Alignment:
Q  471 accactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatg 550  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| || ||||  ||||||||||||||    
T  4659003 accactaactcttcatcatttatattccaacaatataatgattattttaataaaaagcagcgtgggatccacttaagaatg 4659083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 337 - 455
Target Start/End: Original strand, 42483627 - 42483745
Alignment:
Q  337 cttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaata 436  Q
    |||||||||| ||||||||| |||||| |||| ||| |||||| ||| | ||| ||  |||||||||| ||| |||       |||||||||||||||||    
T  42483627 cttagagcatccataatggagaccctatattttgaggtcttaaccggatttcatgtttatacatcactattttataattttttaataacagtatctaata 42483726  T
Q  437 agcactcaatcactccaat 455  Q
    |||||||||||| ||||||    
T  42483727 agcactcaatcattccaat 42483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 527
Target Start/End: Complemental strand, 8514614 - 8514563
Alignment:
Q  476 taactcttcatcttttacattccaacaatacaatgattattttaataaaaag 527  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8514614 taactctttatcatttacattctaacaatacaatgattattttaataaaaag 8514563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 455
Target Start/End: Complemental strand, 42401199 - 42401085
Alignment:
Q  341 gagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagca 440  Q
    |||||| || |||||| || || ||||| |||||||||||||| || || ||| | |||||||||||| |||       |||||||||| ||||||||||    
T  42401199 gagcatccacaatggagactctcaatttggagttcttaaacggatcccatgtgtacacatcactcttttataattttttaataacagtacctaataagca 42401100  T
Q  441 ctcaatcactccaat 455  Q
    |||| ||||||||||    
T  42401099 ctcagtcactccaat 42401085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 47210106 - 47210163
Alignment:
Q  277 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||    
T  47210106 tcatattcattaatttatgtgacaacatattattagatgtatgtgtaaaatatttgta 47210163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 565
Target Start/End: Complemental strand, 32544969 - 32544901
Alignment:
Q  498 caacaatacaatgattattttaataaaaagagtgtggagtccacttaagaatg-gggtcttaagtgaga 565  Q
    ||||| ||||||||||||||||||||||| | | | | ||||||||||||||| |||||||||||||||    
T  32544969 caacattacaatgattattttaataaaaatattatagggtccacttaagaatgagggtcttaagtgaga 32544901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 42523348 - 42523273
Alignment:
Q  259 tgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    |||||| |||||| ||| ||||||||||||||||| |||||||||||| ||| |||| ||   |||||||||||||    
T  42523348 tgaaaaacacatacattatcatattcattaattgacgtgacaataaatcattagatgcatacataaaataattgta 42523273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 22336476 - 22336422
Alignment:
Q  277 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||||||||||||| |  ||| ||||||||||| |||||||||||||||    
T  22336476 tcatattcattaattgatgtaatcatacattatttgatgcatgtgtaaaataatt 22336422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 33259658 - 33259700
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33259658 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33259700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 33279817 - 33279859
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33279817 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33279859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 550
Target Start/End: Complemental strand, 6268278 - 6268197
Alignment:
Q  469 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaata--aaaagagtgtggagtccacttaagaatg 550  Q
    ||||| |||||| |||||  ||||||  ||||||||||||||||||||||||||  |||| ||||||  |||||||||||||||    
T  6268278 ccacctctaacttttcattatttaca--ccaacaatacaatgattattttaataaaaaaatagtgtgaggtccacttaagaatg 6268197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 41970594 - 41970651
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||| ||||||||||||||||||| ||| | |||||||||| ||||| ||||||||||    
T  41970594 tttttatattcattaattgatgtggcaacatattatttgatatatgtataaaataatt 41970651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 7712336 - 7712396
Alignment:
Q  507 aatgattattttaataaaaaga-gtgtggagtccacttaagaa-tggggtcttaagtgaga 565  Q
    ||||||||||||| | |||||  |||||||||||||||||||| |||||||||||||||||    
T  7712336 aatgattattttatttaaaagttgtgtggagtccacttaagaattggggtcttaagtgaga 7712396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 334
Target Start/End: Complemental strand, 51587435 - 51587375
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    |||||||||||||||||||| ||  ||| | ||| ||||||| ||||||||||||||||||    
T  51587435 ttttcatattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaataattgta 51587375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 376 - 455
Target Start/End: Original strand, 33780511 - 33780590
Alignment:
Q  376 ttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagcactcaatcactccaat 455  Q
    |||||||| ||||||||| | ||||||| |||| |||       ||||||||||| ||||||||||||||||||| ||||    
T  33780511 ttaaacggatctcacgtgtacacatcacacttttataattttttaataacagtatataataagcactcaatcactacaat 33780590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 603 - 645
Target Start/End: Complemental strand, 42400908 - 42400866
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  42400908 tacctattaggtaccgggtcttaaatgatgaagacctcaccat 42400866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 645
Target Start/End: Complemental strand, 19512793 - 19512748
Alignment:
Q  600 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  19512793 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 19512748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 3e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 469 - 561
Target Start/End: Original strand, 24744484 - 24744578
Alignment:
Q  469 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatgg-ggtcttaagt 561  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  24744484 ccaccactaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtgggatccacttaagaatggaggtcttaagt 24744578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 457 - 570
Target Start/End: Original strand, 40485154 - 40485269
Alignment:
Q  457 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaat-ggggt 554  Q
    |||||| |||| ||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||   | |    
T  40485154 tctaaatcggtcccaccaccaactcttcagcatttacattccaacaaaacaatgattattttaataaaaagtagtgtgaggtccacttaagaataatgat 40485253  T
Q  555 cttaagtgagatcctc 570  Q
    ||||||||||||||||    
T  40485254 cttaagtgagatcctc 40485269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 471 - 558
Target Start/End: Complemental strand, 30285172 - 30285083
Alignment:
Q  471 accactaactcttcatcttttacattccaacaatacaatgattattttaata-aaaagagtgtggagtccacttaagaatg-gggtctta 558  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||| ||||||| | |||||||| |||| ||||||||    
T  30285172 accactaactcttcataatttacatttcaacaatacaatgattattttaataaaaaatagtgtggggcccacttaaaaatgagggtctta 30285083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 603 - 645
Target Start/End: Complemental strand, 7885857 - 7885815
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7885857 tacctattaggtatcgggtcttaaatggtgaagacctcaccat 7885815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 471 - 563
Target Start/End: Complemental strand, 51463633 - 51463539
Alignment:
Q  471 accactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatg-gggtcttaagtga 563  Q
    ||||||||||||||||  |||| ||| ||||| || |||||||||||||| ||| || ||||||| ||||||||||||||| || ||||||||||    
T  51463633 accactaactcttcattatttatatttcaacagtaaaatgattattttaacaaagagtagtgtggggtccacttaagaatgtggatcttaagtga 51463539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 40485033 - 40485130
Alignment:
Q  358 accctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagcactcaatcactccaat 455  Q
    ||||| ||||||||||||||| ||||||| |||||| | |||||| ||||| |||       ||||| |||| |||||||||| |||| |||||||||    
T  40485033 accctcaatttagagttcttagacgggtcccacgtgtaaacatcattcttttataattttttaataatagtacctaataagcattcaaccactccaat 40485130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 338 - 408
Target Start/End: Original strand, 24744340 - 24744410
Alignment:
Q  338 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttt 408  Q
    ||||||||| || |||||| | ||| ||||| |||||||||||  ||||||||||| | ||||||||||||    
T  24744340 ttagagcatccacaatggagatcctgaatttggagttcttaaataggtctcacgtgtacacatcactcttt 24744410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 1334114 - 1334182
Alignment:
Q  459 taaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 527  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||    
T  1334114 taaatcggttccaccactaactcctcatcgtttacattccaacaatacaccgattattttaataaaaag 1334182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 3348157 - 3348068
Alignment:
Q  475 ctaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||  ||  ||||||||||||||    
T  3348157 ctaactcttcaacatttacattccaacaatacaatgattattttaataaaaagtagcgtggaatccacttaatgat--ggtcttaagtgaga 3348068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 9415522 - 9415582
Alignment:
Q  470 caccactaactcttcatcttttacattccaacaatacaatgatta---ttttaataaaaag 527  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||   |||||||||||||    
T  9415522 caccactaactcttcatcatttacatttcaacaatataatgattattattttaataaaaag 9415582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 329
Target Start/End: Complemental strand, 40957199 - 40957125
Alignment:
Q  255 aatatgaaaatcacatagattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 329  Q
    ||||||| ||||||||  ||| ||||||||||||||| | |||||||   |||||| ||||||||||||||||||    
T  40957199 aatatgacaatcacatgaattgtcatattcattaattaacgtgacaacttattattagatgtatgtgtaaaataa 40957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 285 - 328
Target Start/End: Complemental strand, 25487428 - 25487385
Alignment:
Q  285 attaattgatgtgacaataaattatttgatgtatgtgtaaaata 328  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||    
T  25487428 attaattgatgtgacaatacattattgaatgtatgtgtaaaata 25487385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 30075817 - 30075763
Alignment:
Q  280 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    ||||||||||||||||||||||||  |||||  ||| || |||||||||||||||    
T  30075817 tattcattaattgatgtgacaatattttattaaatgcatatgtaaaataattgta 30075763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 10172473 - 10172530
Alignment:
Q  277 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    ||||||||| ||||||| |||||||   || |||||||| ||||||||||||||||||    
T  10172473 tcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataattgta 10172530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 459 - 527
Target Start/End: Original strand, 21455147 - 21455215
Alignment:
Q  459 taaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 527  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  21455147 taaatcggttccacgactaactcttcatcatttacattccaacaatacagtaattattttaataaaaag 21455215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 565
Target Start/End: Complemental strand, 39445860 - 39445799
Alignment:
Q  505 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||    
T  39445860 acaatgattattttattaaaaagttgtgtggggtccacttaagaatggggtcttaagtgaga 39445799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 40288177 - 40288234
Alignment:
Q  279 atattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 336  Q
    ||||| ||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  40288177 atatttattaattgacgtgacaatatattattaaatgtatgtgtaaaataattgtata 40288234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 469 - 520
Target Start/End: Complemental strand, 39401741 - 39401690
Alignment:
Q  469 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaa 520  Q
    |||||||||| | |||||| ||||||||||||| ||||||||||||||||||    
T  39401741 ccaccactaatttttcatcatttacattccaactatacaatgattattttaa 39401690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 45154216 - 45154175
Alignment:
Q  604 acctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  45154216 acctattaggtatcgggtcttaaattgtgaagacatcaccat 45154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 17694449 - 17694379
Alignment:
Q  457 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 527  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  17694449 tctaaatcggtctcaccactaactcttcatcatttacattccaacactacaatgattattttaatgaaaag 17694379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 33129852 - 33129788
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatact 338  Q
    ||||||||||| ||||||||  | ||||||||| ||||||||| |||||||||||||||||||||    
T  33129852 ttttcatattcgttaattgactttacaataaatcatttgatgtgtgtgtaaaataattgtatact 33129788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 46061631 - 46061690
Alignment:
Q  600 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 659  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||| | |||| |||||    
T  46061631 agatacctattaggtatcggatcttaaatggtgaagacatcaccatcggggatggtctta 46061690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 1820216 - 1820260
Alignment:
Q  282 ttcattaattgatgtgacaataaattatttgatgtatgtgtaaaa 326  Q
    |||||||||||||| ||||||| || |||||||||||||||||||    
T  1820216 ttcattaattgatgcgacaatacatcatttgatgtatgtgtaaaa 1820260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 600 - 644
Target Start/End: Original strand, 40946442 - 40946486
Alignment:
Q  600 agatacctattaggtgtcgggtcttaaatggtgaagacctcacca 644  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  40946442 agatacctattaggtaccggatcttaaatggtgaagacctcacca 40946486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 645
Target Start/End: Complemental strand, 17694312 - 17694257
Alignment:
Q  590 tctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||    
T  17694312 tctccaataaagataactattagatatcgggtcttaaatagcgaagatctcaccat 17694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 55882994 - 55882948
Alignment:
Q  285 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  55882994 attaattgatgtgtcaatatattatttaatgtatatgtaaaataatt 55882948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 2742233 - 2742184
Alignment:
Q  288 aattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatac 337  Q
    |||||| ||||||| | |||||| ||||||||| ||||||||||||||||    
T  2742233 aattgacgtgacaacatattattggatgtatgtttaaaataattgtatac 2742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 31053041 - 31053098
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||||||||||||| | ||||| | || ||| |||| |||||||||||||||    
T  31053041 ttttcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 502 - 565
Target Start/End: Complemental strand, 41248351 - 41248286
Alignment:
Q  502 aatacaatgattattttaataaaaagagtgtggagtcc-acttaagaatg-gggtcttaagtgaga 565  Q
    ||||||||||||||||||||||||  | ||||| | || ||||||||||| |||||||||||||||    
T  41248351 aatacaatgattattttaataaaagtattgtgggggccaacttaagaatgagggtcttaagtgaga 41248286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 565
Target Start/End: Original strand, 45047237 - 45047298
Alignment:
Q  505 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||||||||||||| ||||| |  |||||| | ||||||||||||| ||||||||||||||    
T  45047237 acaatgattattttattaaaatgttgtgtggggcccacttaagaatgaggtcttaagtgaga 45047298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 464 - 565
Target Start/End: Original strand, 12975436 - 12975538
Alignment:
Q  464 cggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtg 562  Q
    ||||||||| |||||||||| ||| ||||||||  || |||| ||||||||||||||||||||| | || | |||||||||||||||| ||| |||| ||    
T  12975436 cggttccactactaactctttatcgtttacattttaaaaatataatgattattttaataaaaagtactgcgaagtccacttaagaatgtggtattaaatg 12975535  T
Q  563 aga 565  Q
    |||    
T  12975536 aga 12975538  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 31766284 - 31766219
Alignment:
Q  457 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaata 522  Q
    |||||| || |||||||||| |||||||||| |||||||||| |||||||||||||  ||||||||    
T  31766284 tctaaatcgattccaccactgactcttcatcatttacattcctacaatacaatgatcgttttaata 31766219  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 603 - 659
Target Start/End: Original strand, 33099726 - 33099782
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 659  Q
    ||||||||| || |||| |||||||||||||||||||||||||  ||||||||||||    
T  33099726 tacctattaagtatcggatcttaaatggtgaagacctcaccattagagatgatctta 33099782  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 277 - 331
Target Start/End: Original strand, 8514152 - 8514206
Alignment:
Q  277 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    ||||||| ||||||||||||||||||| || |||  |||||||||||||||||||    
T  8514152 tcatatttattaattgatgtgacaatacatcattgcatgtatgtgtaaaataatt 8514206  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 409
Target Start/End: Original strand, 33099518 - 33099589
Alignment:
Q  338 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttta 409  Q
    ||||||||| || |||||| ||||| ||||| ||| ||||||||||||||||  || |||| ||||||||||    
T  33099518 ttagagcatccacaatggagaccctcaattttgaggtcttaaacgggtctcatatgtatacgtcactcttta 33099589  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 505 - 565
Target Start/End: Complemental strand, 24141386 - 24141324
Alignment:
Q  505 acaatgattattttaataaaaag-agtgtggagtccacttaagaatg-gggtcttaagtgaga 565  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||  ||||||||||||||    
T  24141386 acaatgattattttattaaaaagttgtgtggagaccacttaagaatgaaggtcttaagtgaga 24141324  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 10153212 - 10153273
Alignment:
Q  273 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    ||||||| ||| ||||||||| ||||||| | ||||||  ||| ||||||||||||||||||    
T  10153212 attttcagatttattaattgacgtgacaacacattattgaatgcatgtgtaaaataattgta 10153273  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 14717337 - 14717394
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||||||||||||||||||||| | || ||| |||| |||||||||||||||    
T  14717337 ttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 19117275 - 19117336
Alignment:
Q  273 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 334  Q
    |||||||| |||||||||| ||||||||| | |||||| |||| ||||||||||||||||||    
T  19117275 attttcatgttcattaattaatgtgacaacacattattggatgcatgtgtaaaataattgta 19117336  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 32892065 - 32892008
Alignment:
Q  274 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||||||||||| ||  |||||||||||||| |||| |||||||||||||||    
T  32892065 ttttcatattcattaattaatacgacaataaattattggatgcatgtgtaaaataatt 32892008  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 4942534 - 4942594
Alignment:
Q  507 aatgattattttaataaaaaga-gtgtggagtccacttaagaatg-gggtcttaagtgaga 565  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||    
T  4942534 aatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtcttaagtgaga 4942594  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 455
Target Start/End: Original strand, 1309766 - 1309801
Alignment:
Q  420 aataacagtatctaataagcactcaatcactccaat 455  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1309766 aataatagtatctaataagcactcaatcactccaat 1309801  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 455
Target Start/End: Original strand, 4747073 - 4747108
Alignment:
Q  420 aataacagtatctaataagcactcaatcactccaat 455  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4747073 aataacattatctaataagcactcaatcactccaat 4747108  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 8433954 - 8433996
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||||  | |||||||||||||||||||||||||||    
T  8433954 tacctattaggtaccaggtcttaaatggtgaagacctcaccat 8433996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 33494951 - 33494993
Alignment:
Q  603 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    |||||| ||||| |||||||||||||||| |||||||||||||    
T  33494951 tacctaataggtatcgggtcttaaatggttaagacctcaccat 33494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 41579314 - 41579268
Alignment:
Q  285 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 331  Q
    |||||||||||||| || | |||||| ||||||||||||||||||||    
T  41579314 attaattgatgtgaaaacacattattggatgtatgtgtaaaataatt 41579268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 505 - 565
Target Start/End: Original strand, 36974250 - 36974310
Alignment:
Q  505 acaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 565  Q
    ||||| |||||||||||||||||  |||||| |  |||||||||||||||||||||||||||    
T  36974250 acaattattattttaataaaaagtggtgtgg-gatcacttaagaatggggtcttaagtgaga 36974310  T

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Target: scaffold0578 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 10145 - 10190
Alignment:
Q  600 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 645  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  10145 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 10190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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