View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923-Insertion-5 (Length: 365)

Name: NF5923-Insertion-5
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923-Insertion-5
NF5923-Insertion-5
[»] chr7 (3 HSPs)
chr7 (9-365)||(46847162-46847525)
chr7 (246-320)||(46658654-46658728)
chr7 (254-349)||(42011431-42011525)
[»] chr5 (3 HSPs)
chr5 (246-335)||(8204336-8204425)
chr5 (254-343)||(26305994-26306082)
chr5 (254-343)||(29538972-29539062)
[»] chr6 (3 HSPs)
chr6 (246-335)||(34051312-34051401)
chr6 (254-314)||(27336276-27336335)
chr6 (254-314)||(27397016-27397075)
[»] chr3 (4 HSPs)
chr3 (246-335)||(30319734-30319823)
chr3 (246-333)||(45245216-45245303)
chr3 (254-349)||(26250523-26250617)
chr3 (257-349)||(49016246-49016337)
[»] chr4 (4 HSPs)
chr4 (257-343)||(42477441-42477526)
chr4 (254-351)||(53409111-53409207)
chr4 (254-314)||(31417349-31417408)
chr4 (254-314)||(48512659-48512718)
[»] chr1 (1 HSPs)
chr1 (254-349)||(3154484-3154578)
[»] scaffold0006 (1 HSPs)
scaffold0006 (254-331)||(282194-282270)
[»] chr2 (1 HSPs)
chr2 (256-296)||(14185522-14185562)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 46847525 - 46847162
Alignment:
Q  9 cttcacccttgtcttacgagaaaccatttttcacttttattttgtattgacaacatcgttgtactagttcatttgtctatgtcctcactcacctcccttg 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  46847525 cttcacccttgtcatacgagaaaccatttttcacttttattttgtattgacaacatcattgtactagttcatttgtctatctcctcactcacctcccttg 46847426  T
Q  109 tctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgttgccggtcatgctctatgtgactaatggtgttgtttgaagcaagtcatg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  46847425 tctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgtttccggtcatgttctatgtgactaatggtgttgtttgaagcaagtcatg 46847326  T
Q  209 acatttaccatgaatgctttgttgcatggtgacattt-------accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatat 301  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  46847325 acatttaccatgaatgctttgttgcatggtgacatttaggctggaccaatgaaagtattggtgcatgatggaccaataattaaaaccattaaattaatat 46847226  T
Q  302 gtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgc 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46847225 gtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgc 46847162  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 46658654 - 46658728
Alignment:
Q  246 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactat 320  Q
    |||||||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||||||||||||||||    
T  46658654 accaatgaaagtattggtccataatggaccaaaaattaaagtcattggattaacatgtaagcacaataatactat 46658728  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 42011525 - 42011431
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 349  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||||||| |  ||||||| | ||| ||| |||||||| ||||    
T  42011525 aagtattggtccataatggaccaatatttataaccattggatt-atatgtatgcacaataacataatgcacctctcacgtctaattatttctttta 42011431  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 8204336 - 8204425
Alignment:
Q  246 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 335  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| || || ||||||||    
T  8204336 accaatgaaagtattggtccatgatggaccaaaaattaaagccattagattaacatgtaagcacaataatactatacatcatacacatct 8204425  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 26305994 - 26306082
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 343  Q
    |||||||||||||| ||||| ||||| ||| |  |||| ||||| |||||||||||||||| || ||  ||| ||||||||| |||||||    
T  26305994 aagtattggtccataatggatcaatatttatagtcattggatta-tatgtaagcacaataacacaatatacctcacacatctaattattt 26306082  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 343
Target Start/End: Complemental strand, 29539062 - 29538972
Alignment:
Q  254 aagtattggtccatgatggaccaataatt--aaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 343  Q
    |||||||||||||| ||||||||||| ||  | | ||||| ||||| |||| ||||||||||| || || |||| ||||||||| |||||||    
T  29539062 aagtattggtccataatggaccaatatttttatagccattggatta-tatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 34051312 - 34051401
Alignment:
Q  246 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 335  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||| |||||||| ||||| || |||||||||||    
T  34051312 accaatgaaagtattggtccatgatggaccaaaaattaaagtcattagattaacatgtaaacacaataacactatacatcacacacatct 34051401  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 27336335 - 27336276
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 314  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27336335 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27336276  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 27397075 - 27397016
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 314  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27397075 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27397016  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 30319734 - 30319823
Alignment:
Q  246 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 335  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||| ||||||| ||||||| ||||| || |||||||||||    
T  30319734 accaatgaaagtattggtccataatggaccacaaattaaagccattagattaacatgtaagtacaataacactatacatcacacacatct 30319823  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 45245216 - 45245303
Alignment:
Q  246 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacat 333  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||  ||||||| ||||||| ||||| || |||||||||    
T  45245216 accaatgaaagtattggtccataatggaccaaaaattaaagccattagattagcatgtaagtacaataacactatacatcacacacat 45245303  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 26250523 - 26250617
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 349  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| |||| || |||||||||||  ||||||| ||||| ||| |||||||| ||||    
T  26250523 aagtattggtccataatggaccaatatttataaccattagatt-atatatatgcacaataatataatgcacctcacacgtctaattatttccttta 26250617  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 349
Target Start/End: Complemental strand, 49016337 - 49016246
Alignment:
Q  257 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 349  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||| |||||| ||||||||| |  ||||||| ||||| ||| |||||||||||||    
T  49016337 tattggtccataatgaaccaatatttataaccattggatta-tatgtatgcacaataacataatgcacctcacacgtctaattatttcattta 49016246  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 42477441 - 42477526
Alignment:
Q  257 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 343  Q
    ||||||||||| ||||||||||| ||| ||||||| |||| |||| |||||||||||| || || |||| ||||||||| |||||||    
T  42477441 tattggtccataatggaccaatatttataaccattggatt-atatataagcacaataacacaatacacctcacacatctaattattt 42477526  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 351
Target Start/End: Original strand, 53409111 - 53409207
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatt 351  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| |||| || ||||||||| |  ||||||| ||||| | | |||||||| ||||||    
T  53409111 aagtattggtctataatggaccaatatttataaccattggatt-atatatatgcacaataacataatgcacctcacacgtttaattatttcttttatt 53409207  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 31417408 - 31417349
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 314  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  31417408 aagtattggtctataatggaccaatatttataaccattggatt-atatgtatgcacaataa 31417349  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 48512659 - 48512718
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 314  Q
    |||||||||||||| ||||||||||| ||| ||||||| || | ||||||| |||||||||    
T  48512659 aagtattggtccataatggaccaatatttataaccatt-gaattatatgtatgcacaataa 48512718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 3154484 - 3154578
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 349  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||| ||||||| ||||||||| |  ||||||| ||||| ||| |||||||| ||||    
T  3154484 aagtattggtccataatggaccaatatttataaccactggatt-atatgtatgcacaataacataatgcacctcacacgtctaattatttccttta 3154578  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 282194 - 282270
Alignment:
Q  254 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacac 331  Q
    |||||||||| ||| || |||||||| ||| |||||||||||| ||||||| |||||||||||  ||||||| |||||    
T  282194 aagtattggttcataatagaccaatatttataaccattagatt-atatgtatgcacaataatataatgcacctcacac 282270  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 14185522 - 14185562
Alignment:
Q  256 gtattggtccatgatggaccaataattaaaaccattagatt 296  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  14185522 gtattggtccatgatggaccaattatttcaaccattagatt 14185562  T

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