View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923-Insertion-6 (Length: 323)
Name: NF5923-Insertion-6
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 29426273 - 29426069
Alignment:
| Q |
60 |
tatacatagaacatatttaagaatgaggtaacttttagcgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
159 |
Q |
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| T |
29426273 |
tatacataggacatatttaagaatgaggtaacttttaacgaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagcca |
29426174 |
T |
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| Q |
160 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29426173 |
tgattctaccaggctcagcaaaaccattaagaccattaagtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgc |
29426074 |
T |
|
| Q |
260 |
taaga |
264 |
Q |
| |
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||||| |
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| T |
29426073 |
taaga |
29426069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 99 - 320
Target Start/End: Complemental strand, 29461501 - 29461283
Alignment:
| Q |
99 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
29461501 |
gaacctgcaagtgtatcaagcaaagtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccatttaacccattaa |
29461402 |
T |
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| Q |
199 |
gtaaccttttagttggtcctttcccaaaatttggcaacataactcttacatcctcccatgctaagaagcttcctgatctattaagaccacaacatgattc |
298 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||||||| |||||| ||| ||| |
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| T |
29461401 |
gtaacctcttggttggtcctttcccaaaatttggcaacataactcttagatcttcccatgctaagaaacttcc---tctattaaggccacaatatgcttc |
29461305 |
T |
|
| Q |
299 |
ctcttcactctcacccatgttg |
320 |
Q |
| |
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||| ||||||||| |||||||| |
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| T |
29461304 |
ctcatcactctcatccatgttg |
29461283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 29426305 - 29426271
Alignment:
| Q |
9 |
gtttgagcatttgaagttaagaaaagaagaactat |
43 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29426305 |
gtttgagcatttgaagttaagaaaagaagaactat |
29426271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 29476656 - 29476603
Alignment:
| Q |
113 |
atcaagcaaagtggattttccagagccagaaggacccataatagccatgattct |
166 |
Q |
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|||||| | ||| ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
29476656 |
atcaagaagagtagattttccagaaccagatggacccataatagccatgattct |
29476603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 37290273 - 37290237
Alignment:
| Q |
123 |
gtggattttccagagccagaaggacccataatagcca |
159 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
37290273 |
gtggattttccagagccagatggacccataatagcca |
37290237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 36068412 - 36068332
Alignment:
| Q |
123 |
gtggattttccagagccagaaggacccataatagccatgattctaccaggctcagcaaaaccattaagaccattaagtaac |
203 |
Q |
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|||| ||| ||| |||||||||||||||||| ||||||||| |||||||| |||||||||||| | | ||||| ||||||| |
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| T |
36068412 |
gtggttttgccacagccagaaggacccataacagccatgatcctaccaggttcagcaaaaccagttacaccatcaagtaac |
36068332 |
T |
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