View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923-Insertion-7 (Length: 233)
Name: NF5923-Insertion-7
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 216
Target Start/End: Original strand, 45936891 - 45937098
Alignment:
| Q |
9 |
gggctttcttattgtataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacagcttttatta |
108 |
Q |
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| T |
45936891 |
gggctttcttattgtataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacagcttttatta |
45936990 |
T |
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| Q |
109 |
gctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattagttcataattacatataattatatttagtagtactaatt |
208 |
Q |
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| T |
45936991 |
gctgggcttttcttcgggagaaattatatgttggaacgtaagcaatttaattgattaattagttcataattacatataattatatttagtagtactaatt |
45937090 |
T |
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| Q |
209 |
atggtcta |
216 |
Q |
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|||||||| |
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| T |
45937091 |
atggtcta |
45937098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 10562486 - 10562608
Alignment:
| Q |
23 |
tataatttcttggaccattgagagaaaagggcctctttatgtctctgtatttacccccttgcagcttatcatcacagcttttattagctgggcttttctt |
122 |
Q |
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||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
10562486 |
tataatttcatggaccattgggagaaaaggtcctctttatgtgtctgtatttactcccttgcagcttatcctcacagcttttattagctgggcttttatt |
10562585 |
T |
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| Q |
123 |
cgggagaaattatatgttggaac |
145 |
Q |
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| T |
10562586 |
caggagaaattatacgttggaac |
10562608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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