View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_high_1 (Length: 636)

Name: NF5923_high_1
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_high_1
NF5923_high_1
[»] chr4 (2 HSPs)
chr4 (25-487)||(9999931-10000401)
chr4 (544-620)||(10001059-10001135)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 9999931 - 10000401
Alignment:
Q  25 tagtagcattaaaatttaaagtcttttgcattatgtagttttccatgattaagagtcagaaaacaatggtgtttcttccatgattg-------------- 110  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||| |||||||||  ||| ||                  
T  9999931 tagtagcattaaaaattaaagccttttgcactatgtagttttccatgtttaagagtcagaaaacaatgctgtttcttctgtgactgtagcttcctggcta 10000030  T
Q  111 -caatggtggaagaagggcaggcatgtaatgtagtgcatatatctgctttcttcaggtacttctctgcattgactagaattaatggtccatactcgaaaa 209  Q
     |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10000031 acaatagtggaagaagggcaggcatgtagtgtagtgcatatatctgctttcttcaggtacttctctgcattgactagaatcaatggtccatactcgaaaa 10000130  T
Q  210 ccatcctcttgcactgtaaataaccaattagacgattatgcgaaatcatagataaacatggatgaatgtattatgaaaattatgtactcttgtgccttcc 309  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||  |||||||||||||| ||  | |||||    
T  10000131 ccatcctcttgcactgtaaataaacaattagacgattatgtgaaatcatagataaacatgaatgaatgtattgagaaaattatgtacttttacgacttcc 10000230  T
Q  310 atatatgtaacagcaaatatttatctgttgtattggttggtcaatgttttaaaaagtggac--gagatcgaaccagtgaaacttctgagtcatggtttaa 407  Q
    ||||||||||| ||||    ||||||||||||    |||||||||| ||||||||| ||||  ||||| ||||| ||||||||||||||||||| |||||    
T  10000231 atatatgtaactgcaa----ttatctgttgta----ttggtcaatggtttaaaaagcggacaagagatagaaccggtgaaacttctgagtcatgatttaa 10000322  T
Q  408 ttggttaaaatatgcaacaaatataccggttcaaccaaccctggttgaaatggttcagccccgattcaatccggttcaac 487  Q
    |||||||||||||||| | |||| ||||||||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  10000323 ttggttaaaatatgcagcgaatacaccggttcaaccaactc-ggttgaaatggttcagtcccgattcaatccggttcaac 10000401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 544 - 620
Target Start/End: Original strand, 10001059 - 10001135
Alignment:
Q  544 acctccttcttatacttctccatattattgcatgcctttagtagtttctgaattatctctagctgtcattttataat 620  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10001059 acctccttcttatacttctccatattgttgcatgccttcagtagtttctgaattatctctagctgtcattttataat 10001135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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