View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_high_11 (Length: 295)

Name: NF5923_high_11
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_high_11
NF5923_high_11
[»] chr2 (4 HSPs)
chr2 (11-280)||(31330477-31330746)
chr2 (11-280)||(31337198-31337467)
chr2 (36-182)||(2694672-2694805)
chr2 (159-236)||(31316273-31316352)
[»] chr4 (1 HSPs)
chr4 (125-280)||(31662601-31662756)
[»] chr8 (3 HSPs)
chr8 (36-182)||(5559164-5559297)
chr8 (104-266)||(34149932-34150098)
chr8 (32-82)||(25637223-25637273)
[»] chr3 (2 HSPs)
chr3 (36-182)||(19357899-19358032)
chr3 (151-236)||(18112715-18112802)
[»] chr5 (2 HSPs)
chr5 (36-182)||(37367646-37367779)
chr5 (36-182)||(41529793-41529926)
[»] chr7 (3 HSPs)
chr7 (32-106)||(4342653-4342727)
chr7 (201-280)||(34455184-34455266)
chr7 (141-182)||(34455281-34455322)
[»] chr6 (1 HSPs)
chr6 (114-221)||(5248687-5248795)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 31330746 - 31330477
Alignment:
Q  11 cacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctatta 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31330746 cacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctatta 31330647  T
Q  111 atcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaa 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330646 atcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaa 31330547  T
Q  211 gcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcaccatcttagctctaact 280  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31330546 gcttgcctctagctcaaaatacaacacaaacttcaattctctttacatgatcaccatcttagctctaact 31330477  T

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Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 31337467 - 31337198
Alignment:
Q  11 cacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctatta 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31337467 cacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcacttttacctcaatttaagctatta 31337368  T
Q  111 atcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaa 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337367 atcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaa 31337268  T
Q  211 gcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcaccatcttagctctaact 280  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31337267 gcttgcctctagctcaaaatacaacacaaacttcaattctctttacatgatcaccatcttagctctaact 31337198  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 2694805 - 2694672
Alignment:
Q  36 cttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgc 135  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            
T  2694805 cttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------- 2694714  T
Q  136 aacattcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
         |||||||||||||| |||||||||||||||||||||||||||    
T  2694713 -----tcagcccctgcctcaatcttcttgccaagccaaaccctagct 2694672  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 31316273 - 31316352
Alignment:
Q  159 ttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 236  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  31316273 ttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 31662756 - 31662601
Alignment:
Q  125 cattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 224  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662756 cattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 31662657  T
Q  225 caaaatacaacacaaacttcaattctctctacatgatcaccatcttagctctaact 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662656 caaaatacaacacaaacttcaattctctctacatgatcaccatcttagctctaact 31662601  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 5559164 - 5559297
Alignment:
Q  36 cttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgc 135  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                
T  5559164 cttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatactt------------ 5559251  T
Q  136 aacattcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
     |||||||||||||||||| |||||||||||||||||||||||||||    
T  5559252 -acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 5559297  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 34150098 - 34149932
Alignment:
Q  104 gctattaatcacttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatc 202  Q
    |||||| |||||||||||||||| |||| || ||| | ||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34150098 gctatttatcacttatacttacacttcaatttcaatactcatcccttgactcaatcttcttgccaagccaaaccctagctcttggtgtcttgcctcaatc 34149999  T
Q  203 ttgctcaagcttgcctcta--gctcaaaatacaac-acaaacttcaattctctctacatgatcacca 266  Q
    |||||||||||||||||||  ||||||| || |||  ||||||||||||  || |||||||| ||||    
T  34149998 ttgctcaagcttgcctctaatgctcaaagtataactccaaacttcaatttcctttacatgattacca 34149932  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 25637273 - 25637223
Alignment:
Q  32 acagcttatacttctaatgaatcaacataacttaaatttcttctcaaaata 82  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  25637273 acagcttatgcttataattaatcaacataacttaaatttcttctcaaaata 25637223  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 19358032 - 19357899
Alignment:
Q  36 cttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgc 135  Q
    ||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            
T  19358032 cttatacatctaatcaatcaacataacttgaatttcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------- 19357941  T
Q  136 aacattcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
         |||||||||||||| |||||||||||||||||||||||||||    
T  19357940 -----tcagcccctgcctcaatcttcttgccaagccaaaccctagct 19357899  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 236
Target Start/End: Original strand, 18112715 - 18112802
Alignment:
Q  151 cctctatcttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 236  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  18112715 cctcaatcttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 37367779 - 37367646
Alignment:
Q  36 cttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgc 135  Q
    ||||||| |||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||            
T  37367779 cttatacatctaatcaatcaacataacttgaattgcttctcaaaataatcacttttacctcaatttaagctattaatcacttatacttacat-------- 37367688  T
Q  136 aacattcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
         |||||||||||||| |||||||||||||||||||||||||||    
T  37367687 -----tcagcccctgcctcaatcttcttgccaagccaaaccctagct 37367646  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 182
Target Start/End: Original strand, 41529793 - 41529926
Alignment:
Q  36 cttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagctattaatcacttatacttacattcagttgc 135  Q
    ||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||                
T  41529793 cttatacatctaatcaatcaacataacttgaatttcttcccaaaataatcacttttacctcaatttaagctattaatcacttatactt------------ 41529880  T
Q  136 aacattcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
     |||||||||||||||||| |||||||||||||||||||||||||||    
T  41529881 -acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 41529926  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 4342653 - 4342727
Alignment:
Q  32 acagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatcactttcacctcaatttaagct 106  Q
    ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4342653 acagcttatgcttataattaatcaacataacttaaatttcttctcaaaataagcacttttacctcaattttagct 4342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 34455266 - 34455184
Alignment:
Q  201 tcttgctcaagcttgcctcta--gctcaaaatacaacacaaa-cttcaattctctctacatgatcaccatcttagctctaact 280  Q
    ||||||||||||||  |||||  |||  ||| |||||||||| |||||||| || ||||||||| ||||||||||||||||||    
T  34455266 tcttgctcaagcttatctctaatgcttcaaacacaacacaaagcttcaattttcactacatgattaccatcttagctctaact 34455184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 34455322 - 34455281
Alignment:
Q  141 tcagcccctgcctctatcttcttgccaagccaaaccctagct 182  Q
    ||||||| ||| || |||||||||||||||||||||||||||    
T  34455322 tcagcccttgcttcaatcttcttgccaagccaaaccctagct 34455281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 5248795 - 5248687
Alignment:
Q  114 acttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagc 212  Q
    ||||||||||||| |||| || ||| | ||||||| || ||| || || |||||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  5248795 acttatacttacacttcaatttcaatactcagcccttgtctcgattttattgccaagccaaaccctatctcttggtgtcttgactcaatcttgctaaagc 5248696  T
Q  213 ttgcctcta 221  Q
    |||||||||    
T  5248695 ttgcctcta 5248687  T

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