View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_high_13 (Length: 293)

Name: NF5923_high_13
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_high_13
NF5923_high_13
[»] chr7 (3 HSPs)
chr7 (1-280)||(46847158-46847444)
chr7 (157-231)||(46658654-46658728)
chr7 (165-260)||(42011431-42011525)
[»] chr5 (3 HSPs)
chr5 (157-246)||(8204336-8204425)
chr5 (165-254)||(26305994-26306082)
chr5 (165-254)||(29538972-29539062)
[»] chr6 (3 HSPs)
chr6 (157-246)||(34051312-34051401)
chr6 (165-225)||(27336276-27336335)
chr6 (165-225)||(27397016-27397075)
[»] chr3 (4 HSPs)
chr3 (157-246)||(30319734-30319823)
chr3 (157-244)||(45245216-45245303)
chr3 (165-260)||(26250523-26250617)
chr3 (168-260)||(49016246-49016337)
[»] chr4 (4 HSPs)
chr4 (168-254)||(42477441-42477526)
chr4 (165-262)||(53409111-53409207)
chr4 (165-225)||(31417349-31417408)
chr4 (165-225)||(48512659-48512718)
[»] chr1 (1 HSPs)
chr1 (165-260)||(3154484-3154578)
[»] scaffold0006 (1 HSPs)
scaffold0006 (165-242)||(282194-282270)
[»] chr2 (1 HSPs)
chr2 (167-207)||(14185522-14185562)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 46847444 - 46847158
Alignment:
Q  1 tcctcactcacctcccttgtctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgttgccggtcatgctctatgtgactaatggtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  46847444 tcctcactcacctcccttgtctcttctcctctcaagcgcagtagaatcagcatggcactattcgatgtgtttccggtcatgttctatgtgactaatggtg 46847345  T
Q  101 ttgtttgaagcaagtcatgacatttaccatgaatgctttgttgcatggtgacattt-------accaatgaaagtattggtccatgatggaccaataatt 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||    
T  46847344 ttgtttgaagcaagtcatgacatttaccatgaatgctttgttgcatggtgacatttaggctggaccaatgaaagtattggtgcatgatggaccaataatt 46847245  T
Q  194 aaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgctcct 280  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46847244 aaaaccattaaattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatttctttaaaatttgctcct 46847158  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 46658654 - 46658728
Alignment:
Q  157 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactat 231  Q
    |||||||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||||||||||||||||    
T  46658654 accaatgaaagtattggtccataatggaccaaaaattaaagtcattggattaacatgtaagcacaataatactat 46658728  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 42011525 - 42011431
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 260  Q
    |||||||||||||| ||||||||||| ||| ||||||| |||| ||||||| ||||||||| |  ||||||| | ||| ||| |||||||| ||||    
T  42011525 aagtattggtccataatggaccaatatttataaccattggatt-atatgtatgcacaataacataatgcacctctcacgtctaattatttctttta 42011431  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 8204336 - 8204425
Alignment:
Q  157 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 246  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| || || ||||||||    
T  8204336 accaatgaaagtattggtccatgatggaccaaaaattaaagccattagattaacatgtaagcacaataatactatacatcatacacatct 8204425  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 26305994 - 26306082
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 254  Q
    |||||||||||||| ||||| ||||| ||| |  |||| ||||| |||||||||||||||| || ||  ||| ||||||||| |||||||    
T  26305994 aagtattggtccataatggatcaatatttatagtcattggatta-tatgtaagcacaataacacaatatacctcacacatctaattattt 26306082  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 29539062 - 29538972
Alignment:
Q  165 aagtattggtccatgatggaccaataatt--aaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 254  Q
    |||||||||||||| ||||||||||| ||  | | ||||| ||||| |||| ||||||||||| || || |||| ||||||||| |||||||    
T  29539062 aagtattggtccataatggaccaatatttttatagccattggatta-tatgcaagcacaataacacaatacacctcacacatctaattattt 29538972  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 34051312 - 34051401
Alignment:
Q  157 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 246  Q
    |||||||||||||||||||||||||||||||| |||||||  ||||||||||| |||||| |||||||| ||||| || |||||||||||    
T  34051312 accaatgaaagtattggtccatgatggaccaaaaattaaagtcattagattaacatgtaaacacaataacactatacatcacacacatct 34051401  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 27336335 - 27336276
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 225  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27336335 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27336276  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 27397075 - 27397016
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 225  Q
    |||||||||| ||| ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  27397075 aagtattggttcataatggaccaatatttataaccattggatt-atatgtatgcacaataa 27397016  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 30319734 - 30319823
Alignment:
Q  157 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatct 246  Q
    |||||||||||||||||||||| ||||||||  ||||||| |||||||||||| ||||||| ||||||| ||||| || |||||||||||    
T  30319734 accaatgaaagtattggtccataatggaccacaaattaaagccattagattaacatgtaagtacaataacactatacatcacacacatct 30319823  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 244
Target Start/End: Original strand, 45245216 - 45245303
Alignment:
Q  157 accaatgaaagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacat 244  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||||  ||||||| ||||||| ||||| || |||||||||    
T  45245216 accaatgaaagtattggtccataatggaccaaaaattaaagccattagattagcatgtaagtacaataacactatacatcacacacat 45245303  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 26250523 - 26250617
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 260  Q
    |||||||||||||| ||||||||||| ||| |||||||||||| |||| || |||||||||||  ||||||| ||||| ||| |||||||| ||||    
T  26250523 aagtattggtccataatggaccaatatttataaccattagatt-atatatatgcacaataatataatgcacctcacacgtctaattatttccttta 26250617  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 49016337 - 49016246
Alignment:
Q  168 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 260  Q
    ||||||||||| ||| ||||||| ||| ||||||| ||||| |||||| ||||||||| |  ||||||| ||||| ||| |||||||||||||    
T  49016337 tattggtccataatgaaccaatatttataaccattggatta-tatgtatgcacaataacataatgcacctcacacgtctaattatttcattta 49016246  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 42477441 - 42477526
Alignment:
Q  168 tattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattattt 254  Q
    ||||||||||| ||||||||||| ||| ||||||| |||| |||| |||||||||||| || || |||| ||||||||| |||||||    
T  42477441 tattggtccataatggaccaatatttataaccattggatt-atatataagcacaataacacaatacacctcacacatctaattattt 42477526  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 53409111 - 53409207
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcatttatt 262  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| |||| || ||||||||| |  ||||||| ||||| | | |||||||| ||||||    
T  53409111 aagtattggtctataatggaccaatatttataaccattggatt-atatatatgcacaataacataatgcacctcacacgtttaattatttcttttatt 53409207  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 31417408 - 31417349
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 225  Q
    ||||||||||| || ||||||||||| ||| ||||||| |||| ||||||| |||||||||    
T  31417408 aagtattggtctataatggaccaatatttataaccattggatt-atatgtatgcacaataa 31417349  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 48512659 - 48512718
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataa 225  Q
    |||||||||||||| ||||||||||| ||| ||||||| || | ||||||| |||||||||    
T  48512659 aagtattggtccataatggaccaatatttataaccatt-gaattatatgtatgcacaataa 48512718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 3154484 - 3154578
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacacatcttattatttcattta 260  Q
    |||||||||||||| ||||||||||| ||| ||||| | |||| ||||||| ||||||||| |  ||||||| ||||| ||| |||||||| ||||    
T  3154484 aagtattggtccataatggaccaatatttataaccactggatt-atatgtatgcacaataacataatgcacctcacacgtctaattatttccttta 3154578  T

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Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 282194 - 282270
Alignment:
Q  165 aagtattggtccatgatggaccaataattaaaaccattagattaatatgtaagcacaataatactatgcaccacacac 242  Q
    |||||||||| ||| || |||||||| ||| |||||||||||| ||||||| |||||||||||  ||||||| |||||    
T  282194 aagtattggttcataatagaccaatatttataaccattagatt-atatgtatgcacaataatataatgcacctcacac 282270  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 14185522 - 14185562
Alignment:
Q  167 gtattggtccatgatggaccaataattaaaaccattagatt 207  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  14185522 gtattggtccatgatggaccaattatttcaaccattagatt 14185562  T

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