View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_high_6 (Length: 361)
Name: NF5923_high_6
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 30738874 - 30738539
Alignment:
| Q |
14 |
atggtagagaaaaggataatgcattatcgtagctctcataaaatattgctcgttggagagggggatttctccttctcactttgcttggcaaggacatttg |
113 |
Q |
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| T |
30738874 |
atggtagagaaaaggataatgcattatcgtagctctcataaaatattgctcgttggagagggggatttctccttctcactttgcttggcaaggacatttg |
30738775 |
T |
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| Q |
114 |
gttctgcagtgaatatgactgctacctctttggatagtagaggtatattttgcatactaactttgcacattatatgatggttgcactatgctatttttaa |
213 |
Q |
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| T |
30738774 |
gttctgcagtgaatatgactgctacctctttggatagtagaggtatattttgcatactaactttgcacattatatgatggttgcaccatgctatttttaa |
30738675 |
T |
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| Q |
214 |
ttgatttattatgtttcaataaattatttcacctttcataaatgaattttattcagttgcnnnnnnnacaacaaattg----nnnnnnngttcttcatat |
309 |
Q |
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| T |
30738674 |
ttgatttattatgtttcaataaattatttcacctttcataaatcaattttattcagttgctttttttacaacaatttgtttttttttttttttttcatat |
30738575 |
T |
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| Q |
310 |
attgattttaatggtgttaattgattctactaattg |
345 |
Q |
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| T |
30738574 |
attgattgtaatggtgttaattgattctactaattg |
30738539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 30709113 - 30708988
Alignment:
| Q |
34 |
gcattatcgtagctctcataaaatattgctcgttggagagggggatttctccttctcactttgcttggcaaggacatttggttctgcagtgaatatgact |
133 |
Q |
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| T |
30709113 |
gcattatagtagctttcataatattttactagtgggagagggtgatttctccttcgcactatgtttggcaaaggcatttgggtcagctgtgaacatggtt |
30709014 |
T |
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| Q |
134 |
gctacctctttggatagtagaggtat |
159 |
Q |
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| T |
30709013 |
gctacctctttagatgatagaggtat |
30708988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 30728104 - 30728028
Alignment:
| Q |
44 |
agctctcataaaatattgctcgttggagagggggatttctccttctcactttgcttggcaaggacatttggttctgc |
120 |
Q |
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|||||||| |||| |||||||| ||||| || ||||||||||||||||||||||| |||| | ||||||| ||||| |
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| T |
30728104 |
agctctcaaaaaaatttgctcgtgggagaaggagatttctccttctcactttgcttagcaaaggcatttggctctgc |
30728028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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