View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_1 (Length: 636)
Name: NF5923_low_1
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 9999931 - 10000401
Alignment:
| Q |
25 |
tagtagcattaaaatttaaagtcttttgcattatgtagttttccatgattaagagtcagaaaacaatggtgtttcttccatgattg-------------- |
110 |
Q |
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| T |
9999931 |
tagtagcattaaaaattaaagccttttgcactatgtagttttccatgtttaagagtcagaaaacaatgctgtttcttctgtgactgtagcttcctggcta |
10000030 |
T |
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| Q |
111 |
-caatggtggaagaagggcaggcatgtaatgtagtgcatatatctgctttcttcaggtacttctctgcattgactagaattaatggtccatactcgaaaa |
209 |
Q |
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| T |
10000031 |
acaatagtggaagaagggcaggcatgtagtgtagtgcatatatctgctttcttcaggtacttctctgcattgactagaatcaatggtccatactcgaaaa |
10000130 |
T |
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| Q |
210 |
ccatcctcttgcactgtaaataaccaattagacgattatgcgaaatcatagataaacatggatgaatgtattatgaaaattatgtactcttgtgccttcc |
309 |
Q |
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| T |
10000131 |
ccatcctcttgcactgtaaataaacaattagacgattatgtgaaatcatagataaacatgaatgaatgtattgagaaaattatgtacttttacgacttcc |
10000230 |
T |
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| Q |
310 |
atatatgtaacagcaaatatttatctgttgtattggttggtcaatgttttaaaaagtggac--gagatcgaaccagtgaaacttctgagtcatggtttaa |
407 |
Q |
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| T |
10000231 |
atatatgtaactgcaa----ttatctgttgta----ttggtcaatggtttaaaaagcggacaagagatagaaccggtgaaacttctgagtcatgatttaa |
10000322 |
T |
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| Q |
408 |
ttggttaaaatatgcaacaaatataccggttcaaccaaccctggttgaaatggttcagccccgattcaatccggttcaac |
487 |
Q |
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| T |
10000323 |
ttggttaaaatatgcagcgaatacaccggttcaaccaactc-ggttgaaatggttcagtcccgattcaatccggttcaac |
10000401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 544 - 620
Target Start/End: Original strand, 10001059 - 10001135
Alignment:
| Q |
544 |
acctccttcttatacttctccatattattgcatgcctttagtagtttctgaattatctctagctgtcattttataat |
620 |
Q |
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| T |
10001059 |
acctccttcttatacttctccatattgttgcatgccttcagtagtttctgaattatctctagctgtcattttataat |
10001135 |
T |
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