View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_low_14 (Length: 289)

Name: NF5923_low_14
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_low_14
NF5923_low_14
[»] chr7 (2 HSPs)
chr7 (22-203)||(33816117-33816296)
chr7 (216-279)||(33816408-33816471)
[»] chr3 (2 HSPs)
chr3 (35-77)||(7885815-7885857)
chr3 (33-77)||(45707496-45707540)
[»] chr6 (1 HSPs)
chr6 (35-91)||(33099726-33099782)
[»] chr4 (4 HSPs)
chr4 (32-91)||(46061631-46061690)
chr4 (32-76)||(40946442-40946486)
chr4 (22-77)||(17694257-17694312)
chr4 (51-91)||(40982672-40982712)
[»] chr1 (4 HSPs)
chr1 (35-77)||(33259658-33259700)
chr1 (35-77)||(33279817-33279859)
chr1 (35-77)||(42400866-42400908)
chr1 (32-77)||(19512748-19512793)
[»] chr5 (2 HSPs)
chr5 (35-77)||(8433954-8433996)
chr5 (35-77)||(33494951-33494993)
[»] scaffold0578 (1 HSPs)
scaffold0578 (32-77)||(10145-10190)
[»] chr2 (2 HSPs)
chr2 (36-77)||(45154175-45154216)
chr2 (32-76)||(11915745-11915789)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 33816117 - 33816296
Alignment:
Q  22 tctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatcttacaaaacatattaattaaactcttaaaaata 121  Q
    |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  33816117 tctccaataaagatacctattaggtgccggatcttaaatgatgaagacctcaccatatgagatggtcttacaaaacatattaattaaactcttgaaaata 33816216  T
Q  122 tcgagcatatcatacacactataaatgtaaaacaattttacacatatatccaattaaacaattttacacgtatatctaaatt 203  Q
    |||||||||||||||| || |||||||||||||||||||||||  ||||||||  |||||||||||||| ||||||||||||    
T  33816217 tcgagcatatcatacatacaataaatgtaaaacaattttacac--atatccaagaaaacaattttacacatatatctaaatt 33816296  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 33816408 - 33816471
Alignment:
Q  216 ctacttaggatttatctactcctatattctaatcttgtcatataaaaaataatctactcctatg 279  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  33816408 ctacttaggatttatctactcctatgttctaatcttgtcatataaaaaatagtctactcctatg 33816471  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 7885857 - 7885815
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7885857 tacctattaggtatcgggtcttaaatggtgaagacctcaccat 7885815  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 45707540 - 45707496
Alignment:
Q  33 gatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    |||| |||||||||  ||| |||||||||||||||||||||||||    
T  45707540 gatatctattaggtaccggatcttaaatggtgaagacctcaccat 45707496  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 33099726 - 33099782
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 91  Q
    ||||||||| || |||| |||||||||||||||||||||||||  ||||||||||||    
T  33099726 tacctattaagtatcggatcttaaatggtgaagacctcaccattagagatgatctta 33099782  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 46061631 - 46061690
Alignment:
Q  32 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 91  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||| | |||| |||||    
T  46061631 agatacctattaggtatcggatcttaaatggtgaagacatcaccatcggggatggtctta 46061690  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 40946442 - 40946486
Alignment:
Q  32 agatacctattaggtgtcgggtcttaaatggtgaagacctcacca 76  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  40946442 agatacctattaggtaccggatcttaaatggtgaagacctcacca 40946486  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 17694312 - 17694257
Alignment:
Q  22 tctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||    
T  17694312 tctccaataaagataactattagatatcgggtcttaaatagcgaagatctcaccat 17694257  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 40982712 - 40982672
Alignment:
Q  51 ggtcttaaatggtgaagacctcaccatctgagatgatctta 91  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  40982712 ggtcttaaatggtgaagacctcaccatcgtagatgctctta 40982672  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 33259658 - 33259700
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33259658 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33259700  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 33279817 - 33279859
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33279817 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33279859  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 42400908 - 42400866
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  42400908 tacctattaggtaccgggtcttaaatgatgaagacctcaccat 42400866  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 19512793 - 19512748
Alignment:
Q  32 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  19512793 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 19512748  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 8433954 - 8433996
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||||  | |||||||||||||||||||||||||||    
T  8433954 tacctattaggtaccaggtcttaaatggtgaagacctcaccat 8433996  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 33494951 - 33494993
Alignment:
Q  35 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    |||||| ||||| |||||||||||||||| |||||||||||||    
T  33494951 tacctaataggtatcgggtcttaaatggttaagacctcaccat 33494993  T

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Target: scaffold0578 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 10145 - 10190
Alignment:
Q  32 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  10145 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 10190  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 45154216 - 45154175
Alignment:
Q  36 acctattaggtgtcgggtcttaaatggtgaagacctcaccat 77  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  45154216 acctattaggtatcgggtcttaaattgtgaagacatcaccat 45154175  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 11915789 - 11915745
Alignment:
Q  32 agatacctattaggtgtcgggtcttaaatggtgaagacctcacca 76  Q
    |||||||||||| || || ||| ||||||||||||||||||||||    
T  11915789 agatacctattaagtatcaggttttaaatggtgaagacctcacca 11915745  T

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