View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5923_low_15 (Length: 262)
Name: NF5923_low_15
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 34 - 241
Target Start/End: Complemental strand, 45937098 - 45936891
Alignment:
| Q |
34 |
tagaccataattagtactactaaatataattatatgtaattatgaactaattaatcaattaaattgcttacgttccaacatataatttctcccgaagaaa |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45937098 |
tagaccataattagtactactaaatataattatatgtaattatgaactaattaatcaattaaattgcttacgttccaacatataatttctcccgaagaaa |
45936999 |
T |
|
| Q |
134 |
agcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttctctcaatggtccaagaaattatacaataa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45936998 |
agcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttctctcaatggtccaagaaattatacaataa |
45936899 |
T |
|
| Q |
234 |
gaaagccc |
241 |
Q |
| |
|
|||||||| |
|
|
| T |
45936898 |
gaaagccc |
45936891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 10562608 - 10562486
Alignment:
| Q |
105 |
gttccaacatataatttctcccgaagaaaagcccagctaataaaagctgtgatgataagctgcaagggggtaaatacagagacataaagaggcccttttc |
204 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
10562608 |
gttccaacgtataatttctcctgaataaaagcccagctaataaaagctgtgaggataagctgcaagggagtaaatacagacacataaagaggaccttttc |
10562509 |
T |
|
| Q |
205 |
tctcaatggtccaagaaattata |
227 |
Q |
| |
|
|| |||||||||| ||||||||| |
|
|
| T |
10562508 |
tcccaatggtccatgaaattata |
10562486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University