View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_16 (Length: 254)
Name: NF5923_low_16
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_16 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 9788974 - 9788736
Alignment:
| Q |
16 |
atattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaagaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788974 |
atattactaaacttatgccaaacctgaatacaattctttccaagcatgaagtcattaaccatagaaccatagatatagcttgcttgccacttgcaaagaa |
9788875 |
T |
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| Q |
116 |
agagctttttagagtaaagtaaggatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788874 |
agagctttttagagtaaagtaaggatttcttaacattagcattttcctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaa |
9788775 |
T |
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| Q |
216 |
aaatggttttaaagaaataaaaagcttattcttccctat |
254 |
Q |
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| T |
9788774 |
aaatggttttaaagaaataaaaagcttattcttccctat |
9788736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 3587547 - 3587659
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaat-aaaa |
237 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
3587547 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggtttcaaagaaataaaaa |
3587646 |
T |
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| Q |
238 |
agcttattcttcc |
250 |
Q |
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| T |
3587647 |
accttattcttcc |
3587659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 44505350 - 44505460
Alignment:
| Q |
140 |
atttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaag |
239 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
44505350 |
atttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgttagagaaaaaatggttttaaagaaataaaaac |
44505449 |
T |
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| Q |
240 |
cttattcttcc |
250 |
Q |
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| T |
44505450 |
cttattcttcc |
44505460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10013746 - 10013647
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10013746 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10013647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 10020887 - 10020788
Alignment:
| Q |
139 |
gatttcttaacattagcatttttctatatacaatagtaccaacatcaaaattgccaagagatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
238 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10020887 |
gatttcttaacattagcattttcctatatacaatagcaccaacatcaaaattgctaagaaatttttcgtcagagaaaaaatggttttaaagaaataaaaa |
10020788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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