View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5923_low_17 (Length: 238)
Name: NF5923_low_17
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 3299684 - 3299487
Alignment:
| Q |
26 |
cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttt |
125 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299684 |
cttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttt |
3299585 |
T |
|
| Q |
126 |
taaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3299584 |
taaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt |
3299487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 3392577 - 3392380
Alignment:
| Q |
26 |
cttcggcataactaatcttgctgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttt |
125 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392577 |
cttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgtatctactcctccagaagacaggtcataaccaagagcatggtcaccgggttt |
3392478 |
T |
|
| Q |
126 |
taaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3392477 |
taaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcacacgagcaaccatggcatcagctaaacgatatt |
3392380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 1850049 - 1849919
Alignment:
| Q |
93 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1850049 |
caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca |
1849950 |
T |
|
| Q |
193 |
cgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |
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| T |
1849949 |
cgagcaactatggcattagctaaacgatatt |
1849919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 1163690 - 1163817
Alignment:
| Q |
93 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |
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|
| T |
1163690 |
caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca |
1163786 |
T |
|
| Q |
193 |
cgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| |
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|
| T |
1163787 |
cgagcaactatggcattagctaaacgatatt |
1163817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 39879898 - 39879768
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
39879898 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
39879802 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
39879801 |
acacgagcaaccacagcatcagctaaacgatatt |
39879768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 40418367 - 40418237
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
40418367 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc |
40418271 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||| |
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|
| T |
40418270 |
acacgagcaaccacagcatcagctaaacaatatt |
40418237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 38987789 - 38987659
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
38987789 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
38987693 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
38987692 |
acacgagcaaccacagcatcagctaaacgatatt |
38987659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 39726502 - 39726372
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||| |
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|
| T |
39726502 |
agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc |
39726406 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
39726405 |
acacgagcaaccacagcatcagctaaacgatatt |
39726372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 39168930 - 39168800
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| |||||||||||||||||| | ||||||||||| ||||| | |
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|
| T |
39168930 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc |
39168834 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |
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|
| T |
39168833 |
acacgagcaaccacggcatcagctaaccgatatt |
39168800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 39399943 - 39399813
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||| || || | |
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|
| T |
39399943 |
agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc |
39399847 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |
|
|
| T |
39399846 |
acacgagcaaccacggcatcagctaaacggtatt |
39399813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 38987879 - 38987826
Alignment:
| Q |
18 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987879 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
38987826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 39726598 - 39726545
Alignment:
| Q |
18 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39726598 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39726545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 39879994 - 39879941
Alignment:
| Q |
18 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39879994 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
39879941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 40418457 - 40418404
Alignment:
| Q |
18 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
71 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40418457 |
accattctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggtt |
40418404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 25912292 - 25912422
Alignment:
| Q |
90 |
agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
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| T |
25912292 |
agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc |
25912388 |
T |
|
| Q |
190 |
acacgagcaaccatggcatcagctaaacgatatt |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
|
|
| T |
25912389 |
acacgagcaaccacatcatcagctaaacgatatt |
25912422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
| Q |
96 |
gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
162 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44444772 |
gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt |
44444838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 25912199 - 25912252
Alignment:
| Q |
18 |
accattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggtt |
71 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
25912199 |
accattctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggtt |
25912252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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