View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_18 (Length: 238)
Name: NF5923_low_18
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9788547 - 9788327
Alignment:
| Q |
1 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccactttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9788547 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccactttt |
9788448 |
T |
|
| Q |
101 |
ttctacaatttaattttctttgcctttattnnnnnnnnnntgcttgcttacatatttatgattcataaacataaacaagtttctaatatatgtattgttg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
9788447 |
ttctgcaatttaattttctttgcctttattaaaaaaaaaatgcttgcttacatatttatgattcataaatatacacaagtttctaatatatgtattgttg |
9788348 |
T |
|
| Q |
201 |
cagttcatggcttctaaagaa |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
9788347 |
cagttcatggcttctaaagaa |
9788327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3589245 - 3589468
Alignment:
| Q |
1 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||| |
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| T |
3589245 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattgttctctgcaccactttt |
3589343 |
T |
|
| Q |
101 |
ttctacaatttaattttctttgcctttatt----nnnnnnnnnntgcttgcttacatatttatgattcataaacataaacaagtttctaatatatgtatt |
196 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || ||||||||||||||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
3589344 |
ttctgcaatttaattttctctgcctttattaaaaaaaaaaaatatgtttgcttacatatttacgattcataaatatacacaagtttctaatatatgtatt |
3589443 |
T |
|
| Q |
197 |
gttgcagttcatggcttctaaagaa |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
3589444 |
gttgcagttcatggcttctaaagaa |
3589468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44505653 - 44505876
Alignment:
| Q |
1 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccac---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||| | |||||| |
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|
| T |
44505653 |
tttgttttggcttagcctttgtttgggttcttttagccgctctttttgtttcattggcttaaggctttgagtccccccaactgttctatttaccactttt |
44505752 |
T |
|
| Q |
97 |
ttttttctacaatttaattttctttgcctttattnnnnnnnnnntgcttgcttacatatttatgattcataaacataaacaagtttctaatatatgtatt |
196 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
44505753 |
ttttttctgcaatttaattttctctgcctttatt-aaaaaaaaatgtttgcttacatatttatgattcataaatatacacaagtttctaatatatgtatt |
44505851 |
T |
|
| Q |
197 |
gttgcagttcatggcttctaaagaa |
221 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44505852 |
gttgcagttcatggcttctaaagaa |
44505876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10013414 - 10013192
Alignment:
| Q |
1 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
10013414 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattgttctatgtaccactttt |
10013316 |
T |
|
| Q |
101 |
ttctacaatttaattttctttgcctttatt---nnnnnnnnnntgcttgcttacatatttatgattcataaacataaacaagtttctaatatatgtattg |
197 |
Q |
| |
|
|| | |||||||||||||| |||||||||| | || |||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
10013315 |
ttttgcaatttaattttctctgcctttattaaaaaaatatatatattttcttacatatttacgattcataaatatacacaagtttctaatatatgtattg |
10013216 |
T |
|
| Q |
198 |
ttgcagttcatggcttctaaagaa |
221 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10013215 |
ttgcagttcatggcttctaaagaa |
10013192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10020555 - 10020333
Alignment:
| Q |
1 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtttcattgggttaaggctttgagtccccccaattgttctttgtaccactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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|
| T |
10020555 |
tttgttttggcttagcctttgtttgggttcttttagcctctctttttgtctcattgggttaaggc-ttgagtccccccaattgttctatgtaccactttt |
10020457 |
T |
|
| Q |
101 |
ttctacaatttaattttctttgcctttatt---nnnnnnnnnntgcttgcttacatatttatgattcataaacataaacaagtttctaatatatgtattg |
197 |
Q |
| |
|
|| | |||||||||||||| |||||||||| | || |||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
10020456 |
ttttgcaatttaattttctctgcctttattaaaaaaatatatatattttcttacatatttacgattcataaatatacacaagtttctaatatatgtattg |
10020357 |
T |
|
| Q |
198 |
ttgcagttcatggcttctaaagaa |
221 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
10020356 |
ttgcagttcatggcttctaaagaa |
10020333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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