View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_19 (Length: 225)
Name: NF5923_low_19
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 27139081 - 27139299
Alignment:
| Q |
7 |
atgatcacccatggattcatcaaaaaacaaataagggtcaatttacatgaatcatgacatggcaaaccaagtgcatggagtttccatgctttcatggggt |
106 |
Q |
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| T |
27139081 |
atgatcacccatggattcatcaaaaaacaaataagggtcaatttacatgaatcatgacatggcaaaccaagtgcatggagtttccatgctttcatggggt |
27139180 |
T |
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| Q |
107 |
atgaaagtattttgagaatgtaaaacaaacaaaacgtaaccaaaaagaagttataagtggtaacatgtcacacacaatggaaagaataaagataaggaag |
206 |
Q |
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| T |
27139181 |
atgaaagtattttgagaatgtaaaacaaacaaaaagtaaccaaaaagaagttataagtggtaacatgtcacacacaatggaaagaataaagataacgaag |
27139280 |
T |
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| Q |
207 |
gtgttatttacaaaacaaa |
225 |
Q |
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| T |
27139281 |
gtgttatttacaacacaaa |
27139299 |
T |
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