View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_low_2 (Length: 494)

Name: NF5923_low_2
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_low_2
NF5923_low_2
[»] chr7 (6 HSPs)
chr7 (31-478)||(33815521-33815968)
chr7 (158-214)||(45429314-45429370)
chr7 (151-213)||(28243153-28243215)
chr7 (156-213)||(8770282-8770339)
chr7 (153-210)||(21222867-21222924)
chr7 (153-205)||(3239994-3240046)
[»] chr4 (7 HSPs)
chr4 (149-213)||(33129788-33129852)
chr4 (161-205)||(1820216-1820260)
chr4 (156-202)||(55882948-55882994)
chr4 (150-199)||(2742184-2742233)
chr4 (156-213)||(31053041-31053098)
chr4 (153-213)||(17517375-17517435)
chr4 (33-61)||(23359188-23359216)
[»] chr5 (6 HSPs)
chr5 (156-213)||(14717337-14717394)
chr5 (153-214)||(19117275-19117336)
chr5 (156-213)||(32892008-32892065)
chr5 (32-67)||(1309766-1309801)
chr5 (32-67)||(4747073-4747108)
chr5 (156-202)||(41579268-41579314)
[»] chr2 (3 HSPs)
chr2 (151-208)||(40288177-40288234)
chr2 (153-213)||(1465738-1465798)
chr2 (161-213)||(34820089-34820141)
[»] chr1 (8 HSPs)
chr1 (32-150)||(42483627-42483745)
chr1 (153-210)||(47210106-47210163)
chr1 (32-136)||(42401085-42401189)
chr1 (153-228)||(42523273-42523348)
chr1 (156-210)||(22336422-22336476)
chr1 (156-213)||(41970594-41970651)
chr1 (153-213)||(51587375-51587435)
chr1 (32-111)||(33780511-33780590)
[»] chr8 (5 HSPs)
chr8 (158-232)||(40957125-40957199)
chr8 (159-202)||(25487385-25487428)
chr8 (153-207)||(30075763-30075817)
chr8 (153-210)||(10172473-10172530)
chr8 (145-213)||(25429348-25429416)
[»] chr6 (6 HSPs)
chr6 (156-210)||(8514152-8514206)
chr6 (153-214)||(10153212-10153273)
chr6 (156-252)||(2428030-2428124)
chr6 (33-61)||(5002380-5002408)
chr6 (151-207)||(29071995-29072051)
chr6 (151-207)||(29104568-29104624)
[»] chr3 (1 HSPs)
chr3 (32-129)||(40485033-40485130)


Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 31 - 478
Target Start/End: Complemental strand, 33815968 - 33815521
Alignment:
Q  31 tattggagtgattgagtgcttattagatactgttattnnnnnnntattaaagagtgatgtattcacgtgagacccgtttaagaactctaaatttagggtt 130  Q
    ||||| |||||||||||| ||||||||||||||||||       ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  33815968 tattgtagtgattgagtgtttattagatactgttattaaaatattattaaagagtgacgtgttcacgtgagaccagtttaagaactctaaatttagggtt 33815869  T
Q  131 tccattatgcatgccctaagtatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaatctatgtgattttcata 230  Q
    ||||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33815868 tccattatggatgctctaaatatacaattattttacacatgcatcaaataatgtattgtcacatcaattaatgaatacgaaaatctatgtgattttcata 33815769  T
Q  231 ttaattgattgatgtaacaacaaattgttaaatacattttaaaatgattgtacctacacatatgtgcatatgtgtgtgaattaattttcaaatcagtaga 330  Q
    || ||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  33815768 ttcatttattgatgtgacaacaaatcgttgaatacattttaaaatgattgtacctacacatatgtgcacatgtgtgtgaattaattttcaaattagtaga 33815669  T
Q  331 cataaggattgaaaagaaaatgaagaacaatgattaagatgtgacaacacaatatttagaatagaaacaattgatttgaagatgtatgatggtatgtggc 430  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815668 cataaggattgaaaagaaaataaagaacaatgattaagatgtgacaacacaatatttagaatagaaacaattgatttgaagatgtatgatggtatgtggc 33815569  T
Q  431 aagtaccagaaagtagctttcaccatggtgcaagctctgaatcaagat 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33815568 aagtaccagaaagtagctttcaccatggtgcaagctctgaatcaagat 33815521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 45429370 - 45429314
Alignment:
Q  158 ttattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaat 214  Q
    ||||||||||||| |||||||| |||| ||| ||  |||||||||||||||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatgaaaat 45429314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 28243153 - 28243215
Alignment:
Q  151 tatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||| |||  |||| ||| || | |||||| |||||||||||||||||||||    
T  28243153 tatacaattattttaaacacgcatccaatgatgtgttgtcatatcaattaatgaatatgaaaa 28243215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 8770339 - 8770282
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||||||||||||||| ||  ||||||   ||||||||||||||||| ||||||||||    
T  8770339 aattattttacacatatattcaataataagttgtcacatcaattaataaatatgaaaa 8770282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 21222924 - 21222867
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatga 210  Q
    |||||| |||||||||||| ||| ||| || | ||| |||||||||||||||||||||    
T  21222924 tacaatcattttacacataaatctaatgatatgttgacacatcaattaatgaatatga 21222867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 3240046 - 3239994
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaa 205  Q
    ||||||||||||||||||| ||  |||||| ||||||||| |||| |||||||    
T  3240046 tacaattattttacacatatattcaataatgtattgtcacgtcaaataatgaa 3239994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 33129788 - 33129852
Alignment:
Q  149 agtatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |  |||||||| |||||||||||    
T  33129788 agtatacaattattttacacacacatcaaatgatttattgtaaagtcaattaacgaatatgaaaa 33129852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 1820260 - 1820216
Alignment:
Q  161 ttttacacatacatcaaataatttattgtcacatcaattaatgaa 205  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||    
T  1820260 ttttacacatacatcaaatgatgtattgtcgcatcaattaatgaa 1820216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 55882948 - 55882994
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaat 202  Q
    |||||||||||| |||||| ||||||| ||||| |||||||||||||    
T  55882948 aattattttacatatacattaaataatatattgacacatcaattaat 55882994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 2742184 - 2742233
Alignment:
Q  150 gtatacaattattttacacatacatcaaataatttattgtcacatcaatt 199  Q
    |||||||||||||||| ||||||||| |||||| | ||||||| ||||||    
T  2742184 gtatacaattattttaaacatacatccaataatatgttgtcacgtcaatt 2742233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 31053098 - 31053041
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||| |||| ||| || | ||||| | ||||||||||||||||||||    
T  31053098 aattattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaa 31053041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 17517375 - 17517435
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||||| ||||||||||| |||||||| || | |||  |||||||||||| ||||||||||    
T  17517375 tacaatcattttacacattcatcaaatgatgtgttgctacatcaattaataaatatgaaaa 17517435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 23359188 - 23359216
Alignment:
Q  33 ttggagtgattgagtgcttattagatact 61  Q
    |||||||||||||||||||||||||||||    
T  23359188 ttggagtgattgagtgcttattagatact 23359216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 14717394 - 14717337
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||| |||| ||| || | ||||||||||||||||||||||||||||    
T  14717394 aattattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaa 14717337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 19117336 - 19117275
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaat 214  Q
    |||||||||||||||||| |||| |||||| | ||||||||| |||||||||| ||||||||    
T  19117336 tacaattattttacacatgcatccaataatgtgttgtcacattaattaatgaacatgaaaat 19117275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 32892008 - 32892065
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||| |||| ||||||||||||||  || ||||||||||||||||||    
T  32892008 aattattttacacatgcatccaataatttattgtcgtattaattaatgaatatgaaaa 32892065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 1309801 - 1309766
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttatt 67  Q
    |||||||||||||||||||||||||||||| |||||    
T  1309801 attggagtgattgagtgcttattagatactattatt 1309766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 4747108 - 4747073
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttatt 67  Q
    |||||||||||||||||||||||||||| |||||||    
T  4747108 attggagtgattgagtgcttattagataatgttatt 4747073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 41579268 - 41579314
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaat 202  Q
    |||||||||||||||||||| |||||| | || ||||||||||||||    
T  41579268 aattattttacacatacatccaataatgtgttttcacatcaattaat 41579314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 40288234 - 40288177
Alignment:
Q  151 tatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatat 208  Q
    ||||||||||||||||||||||||  |||||| ||||||||| ||||||||| |||||    
T  40288234 tatacaattattttacacatacatttaataatatattgtcacgtcaattaataaatat 40288177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 1465738 - 1465798
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||| ||||||||||||| |||| ||| || | ||||||| ||||||||| ||||||||||    
T  1465738 tacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaa 1465798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 34820089 - 34820141
Alignment:
Q  161 ttttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    ||||||||||||||| ||| |  | ||||||| ||||||||||||||||||||    
T  34820089 ttttacacatacatctaatcaaatgttgtcacgtcaattaatgaatatgaaaa 34820141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 42483745 - 42483627
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttattnnnnnnntattaaagagtgatgtattcacgtgagacccgtttaagaactctaaatttagggttt 131  Q
    |||||| |||||||||||||||||||||||||||||       ||| ||| ||||||||||  || ||| | ||| |||||| ||| |||| |||||| |    
T  42483745 attggaatgattgagtgcttattagatactgttattaaaaaattataaaatagtgatgtataaacatgaaatccggttaagacctcaaaatatagggtct 42483646  T
Q  132 ccattatgcatgccctaag 150  Q
    |||||||| |||| |||||    
T  42483645 ccattatggatgctctaag 42483627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 47210163 - 47210106
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatga 210  Q
    ||||| ||||||||||||||||| |||||| | ||||||||| |||||||||||||||    
T  47210163 tacaaatattttacacatacatctaataatatgttgtcacataaattaatgaatatga 47210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 42401085 - 42401189
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttattnnnnnnntattaaagagtgatgtattcacgtgagacccgtttaagaactctaaatttagggttt 131  Q
    |||||||||| |||||||||||||| ||||||||||       ||| |||||||||||| | ||| || || |||||||||||||| ||||| || || |    
T  42401085 attggagtgactgagtgcttattaggtactgttattaaaaaattataaaagagtgatgtgtacacatgggatccgtttaagaactccaaattgagagtct 42401184  T
Q  132 ccatt 136  Q
    |||||    
T  42401185 ccatt 42401189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 228
Target Start/End: Original strand, 42523273 - 42523348
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaatctatgtgattttca 228  Q
    |||||||||||||   || |||| ||| |||||||||||| ||||||||||||||||| ||| |||||| ||||||    
T  42523273 tacaattattttatgtatgcatctaatgatttattgtcacgtcaattaatgaatatgataatgtatgtgtttttca 42523348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 22336422 - 22336476
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatga 210  Q
    ||||||||||||||| ||||||||||| |||  | ||||||||||||||||||||    
T  22336422 aattattttacacatgcatcaaataatgtatgattacatcaattaatgaatatga 22336476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 41970651 - 41970594
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||||||||| ||||| |||||||||| | ||| ||||||||||||||||||| ||||    
T  41970651 aattattttatacatatatcaaataatatgttgccacatcaattaatgaatataaaaa 41970594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 51587375 - 51587435
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||||||||||||||||| ||||||| ||| | |||  || ||||||||||||||||||||    
T  51587375 tacaattattttacacatgcatcaaacaatgtgttgctacgtcaattaatgaatatgaaaa 51587435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 33780590 - 33780511
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttattnnnnnnntattaaagagtgatgtattcacgtgagacccgtttaa 111  Q
    |||| ||||||||||||||||||| |||||||||||       ||| |||| ||||||| | ||||||||| ||||||||    
T  33780590 attgtagtgattgagtgcttattatatactgttattaaaaaattataaaagtgtgatgtgtacacgtgagatccgtttaa 33780511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 40957125 - 40957199
Alignment:
Q  158 ttattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaatctatgtgattttcatatt 232  Q
    |||||||||||||||||| ||||||   ||||||| | ||||||||||||||| |||  |||||||| |||||||    
T  40957125 ttattttacacatacatctaataataagttgtcacgttaattaatgaatatgacaattcatgtgattgtcatatt 40957199  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 25487385 - 25487428
Alignment:
Q  159 tattttacacatacatcaaataatttattgtcacatcaattaat 202  Q
    ||||||||||||||||  |||||| |||||||||||||||||||    
T  25487385 tattttacacatacattcaataatgtattgtcacatcaattaat 25487428  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 30075763 - 30075817
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaata 207  Q
    ||||||||||||||| || |||  |||||  ||||||||||||||||||||||||    
T  30075763 tacaattattttacatatgcatttaataaaatattgtcacatcaattaatgaata 30075817  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 210
Target Start/End: Complemental strand, 10172530 - 10172473
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatga 210  Q
    |||||||||||||||||| |||||||| ||   ||||||| ||||||| |||||||||    
T  10172530 tacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatga 10172473  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 25429416 - 25429348
Alignment:
Q  145 cctaagtatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaa 213  Q
    |||||| |||||||||||||||| ||||||  |||||| | ||  ||||||||||||| ||||| ||||    
T  25429416 cctaaggatacaattattttacaaatacattcaataatgtgttcccacatcaattaattaatataaaaa 25429348  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 8514206 - 8514152
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatga 210  Q
    |||||||||||||||||||  ||| || ||||||||||||||||||| |||||||    
T  8514206 aattattttacacatacatgcaatgatgtattgtcacatcaattaataaatatga 8514152  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 10153273 - 10153212
Alignment:
Q  153 tacaattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaat 214  Q
    |||||||||||||||||| |||  |||||| | ||||||| ||||||||| ||| |||||||    
T  10153273 tacaattattttacacatgcattcaataatgtgttgtcacgtcaattaataaatctgaaaat 10153212  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 2428030 - 2428124
Alignment:
Q  156 aattattttacacatacatcaaataatttattgtcacatcaattaatgaatatgaaaatctatgtgattttcatattaattgattgatgtaacaaca 252  Q
    ||||||||||||||| ||||  || || | || |||||||||||||||||||||| ||| || ||| |||||||||| ||| ||||| || ||||||    
T  2428030 aattattttacacatgcatcttatgatgtgttatcacatcaattaatgaatatgacaat-taagtg-ttttcatattcattaattgaagtcacaaca 2428124  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 5002408 - 5002380
Alignment:
Q  33 ttggagtgattgagtgcttattagatact 61  Q
    |||||||||||||||||||||||||||||    
T  5002408 ttggagtgattgagtgcttattagatact 5002380  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 29072051 - 29071995
Alignment:
Q  151 tatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaata 207  Q
    ||||||||||||||| ||||||||  ||| || | |||||||| |||||||||||||    
T  29072051 tatacaattattttatacatacattcaattatgtgttgtcacaccaattaatgaata 29071995  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 29104624 - 29104568
Alignment:
Q  151 tatacaattattttacacatacatcaaataatttattgtcacatcaattaatgaata 207  Q
    ||||||||||||||| ||||||||  ||| || | |||||||| |||||||||||||    
T  29104624 tatacaattattttatacatacattcaattatgtgttgtcacaccaattaatgaata 29104568  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 40485130 - 40485033
Alignment:
Q  32 attggagtgattgagtgcttattagatactgttattnnnnnnntattaaagagtgatgtattcacgtgagacccgtttaagaactctaaatttagggt 129  Q
    ||||||||| |||| |||||||||| |||| |||||       ||| ||||| |||||| | |||||| ||||||| ||||||||||||||| |||||    
T  40485130 attggagtggttgaatgcttattaggtactattattaaaaaattataaaagaatgatgtttacacgtgggacccgtctaagaactctaaattgagggt 40485033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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