View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_20 (Length: 219)
Name: NF5923_low_20
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_20 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 27139731 - 27139936
Alignment:
| Q |
14 |
gatccacaataccctccctaagaattgtctaaatttcaagttgaatagtgataactcatgaaacaaaccatgtgagtgggggatacctatctttaaatcc |
113 |
Q |
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| T |
27139731 |
gatccacaataccctccctaagaattttctaaattgcaagttgaatagtgataactcatgaaacaaaccatgtgagtgggggatacctatctttaaatcc |
27139830 |
T |
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| Q |
114 |
aaaaagagagtttgcttgtgctatagtccaaaagtcaaagcatcaaatctaaaagatcnnnnnnngttacatacttttataaaagaaaacaatgttcaaa |
213 |
Q |
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| T |
27139831 |
aaaaagagagtttgcttgtgctatagtccaaaagtcaaagcatcaaatctaaaagatcaaaaaaagttacatacttttataaaagaaaacaatgttcaaa |
27139930 |
T |
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| Q |
214 |
ttatgc |
219 |
Q |
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|||||| |
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| T |
27139931 |
ttatgc |
27139936 |
T |
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