View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5923_low_4 (Length: 400)
Name: NF5923_low_4
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5923_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 1848054 - 1848253
Alignment:
| Q |
18 |
caccgagcacaccacgtttcggcgttgcttcctgcatctcactactttcacataagagttagttacgactcgtcgcatttcatttcattgagtctatata |
117 |
Q |
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| T |
1848054 |
caccgagcacaccacgtttcggcgttgcttcctgcatctcaccactttcacaaaagagttagttacgactcgtcgcatttcatttcattgagtctatata |
1848153 |
T |
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| Q |
118 |
tatgtaccaaaatttacaaatgtaaggaaccaaatttgaccaaattcatatacttaaaattcaaaccaaacattacaattcaaatggcttctactttgaa |
217 |
Q |
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| T |
1848154 |
tatgtaccaaaatttacaaatgtaaggaaccaaatttgaccaaattcatatacttcaaattcaaaccaaacataacaattcaaatggcttctactttgaa |
1848253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 1848313 - 1848419
Alignment:
| Q |
285 |
atcattcataccatccttccatgatccactat---------caaaccattttccgcatatatttttcatgacttttaatgtataccttctcactttacga |
375 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1848313 |
atcattcataccatccttccatgatccactattaatctcatcaaaccattttcctcatatatttttcatgacttttaatgtataccttctcactttacga |
1848412 |
T |
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| Q |
376 |
atctatt |
382 |
Q |
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| T |
1848413 |
atctatt |
1848419 |
T |
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