View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_low_7 (Length: 357)

Name: NF5923_low_7
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_low_7
NF5923_low_7
[»] chr2 (7 HSPs)
chr2 (20-338)||(32183764-32184084)
chr2 (272-338)||(32178893-32178959)
chr2 (272-338)||(32175755-32175821)
chr2 (282-334)||(32159482-32159534)
chr2 (118-230)||(4880582-4880690)
chr2 (73-119)||(21659131-21659177)
chr2 (115-182)||(20262616-20262682)
[»] chr4 (4 HSPs)
chr4 (117-230)||(51702290-51702405)
chr4 (137-230)||(8069743-8069837)
chr4 (117-205)||(26070895-26070981)
chr4 (117-230)||(42912555-42912664)
[»] chr8 (2 HSPs)
chr8 (133-226)||(2199653-2199747)
chr8 (117-247)||(26130272-26130401)
[»] chr7 (2 HSPs)
chr7 (119-230)||(26285876-26285986)
chr7 (82-120)||(32864408-32864446)
[»] chr5 (2 HSPs)
chr5 (20-119)||(12658554-12658654)
chr5 (73-119)||(35247748-35247794)
[»] chr3 (1 HSPs)
chr3 (133-218)||(51925708-51925793)
[»] chr1 (3 HSPs)
chr1 (117-217)||(24886774-24886873)
chr1 (141-230)||(27292133-27292223)
chr1 (69-111)||(32839149-32839191)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 32184084 - 32183764
Alignment:
Q  20 gtgttggcagatgattcatatgcctacttgatactctgaacacccactttgtgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 119  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32184084 gtgttgacagatgattcatatgcctacttgatactctgaacactcactctgcgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 32183985  T
Q  120 tgtttagagttgctttttatttaccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtccccca 218  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32183984 tgtttagagttgctttttattt--cacttgtgtaccgatttgatgtatcacccgttagggtttcagcttgtggttttatgggtcaggttcatgtccccca 32183887  T
Q  219 gtcttgtacttcttattttatttgaatttttctttagtttt---nnnnnnnnnncttcattgcagccaataatttttgcagaatatatcagtcagctgat 315  Q
     |||||||||||||||||||||||||||||||||||| |||             |||||||||||||||||| |||||||||||||||||||||||||||    
T  32183886 ttcttgtacttcttattttatttgaatttttctttagctttaaaaaaaaaaaaacttcattgcagccaataacttttgcagaatatatcagtcagctgat 32183787  T
Q  316 ctagaaattcaaacgtctgatct 338  Q
    |||||||||||||||||||||||    
T  32183786 ctagaaattcaaacgtctgatct 32183764  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 32178959 - 32178893
Alignment:
Q  272 tcattgcagccaataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatct 338  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||||||    
T  32178959 tcatttcagccaataatttttgcagaccatatcagtcagctgatctagaatttcaaccgtctgatct 32178893  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 32175821 - 32175755
Alignment:
Q  272 tcattgcagccaataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctgatct 338  Q
    |||||| |||||||||||||| ||||  |||||||||||||||||||||| ||||||| ||||||||    
T  32175821 tcattgtagccaataattttttcagaccatatcagtcagctgatctagaatttcaaacatctgatct 32175755  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 32159534 - 32159482
Alignment:
Q  282 caataatttttgcagaatatatcagtcagctgatctagaaattcaaacgtctg 334  Q
    |||||||||||||||| ||||||||||||||||||||||| | ||| ||||||    
T  32159534 caataatttttgcagactatatcagtcagctgatctagaattccaaccgtctg 32159482  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 4880582 - 4880690
Alignment:
Q  118 gttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccc 216  Q
    |||||||| |||||  |||| ||||||||||||  ||| | ||| ||||||||| |||| |||||||| ||||||||||| | |||||||||||| ||||    
T  4880582 gttgtttaaagttg--ttttctttaccacttgt--actaacttgttgtatcacccgttaaggtttgaggttgtggttttacgagtcaggttcatg-cccc 4880676  T
Q  217 cagtcttgtacttc 230  Q
    || |||||||||||    
T  4880677 caatcttgtacttc 4880690  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 21659131 - 21659177
Alignment:
Q  73 ttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 119  Q
    |||||||| ||||| |||||||||||||||||||||||||| |||||    
T  21659131 ttttttgcaattcgatttcgcatccatacgtgggtgcgctggattgt 21659177  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 20262682 - 20262616
Alignment:
Q  115 attgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcac-cgttagggtttg 182  Q
    |||||||||||||||||  |||| |||||||||||| | |||||||| |||||||| ||||||||||||    
T  20262682 attgttgtttagagttg--ttttctttaccacttgtattctgatttgttgtatcactcgttagggtttg 20262616  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 51702290 - 51702405
Alignment:
Q  117 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcac-cgtta-gggtttgagcttgtggttttatgggtcaggttcatgtcc 214  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||| ||    
T  51702290 tgttgtttagagttgttttctattcaccacttgtgtactgatttgatgtatcactcgttaggggtttgagcttgtggttttctgggtctggctcatgccc 51702389  T
Q  215 cccagtcttgtacttc 230  Q
    ||||| ||||||||||    
T  51702390 cccagccttgtacttc 51702405  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 8069743 - 8069837
Alignment:
Q  137 tatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccccagtcttgtacttc 230  Q
    ||||||||||| ||||||  ||||| ||||||||| ||||||||||||| | |||||| |  |||||||||||||| ||||||||||||||||||    
T  8069743 tatttaccactagtgtacatatttgttgtatcacccgttagggtttgagttggtggttatccgggtcaggttcatgccccccagtcttgtacttc 8069837  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 26070895 - 26070981
Alignment:
Q  117 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtat-caccgttagggtttgagcttgtggttttatgggtcagg 205  Q
    |||||||||||||||  |||| ||||||||||||||||||||||| ||||| | |||||||||||||||  ||||| |||||||||||||    
T  26070895 tgttgtttagagttg--ttttctttaccacttgtgtactgatttgttgtatcccccgttagggtttgagtctgtgg-tttatgggtcagg 26070981  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 42912555 - 42912664
Alignment:
Q  117 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccc 215  Q
    |||||||||||||||  |||| ||||||||||||  ||| ||||| ||||| ||| ||||||||||||| ||||||||||| ||| |||||||||| |||    
T  42912555 tgttgtttagagttg--ttttctttaccacttgt--actaatttgttgtataacccgttagggtttgaggttgtggttttacgggccaggttcatg-ccc 42912649  T
Q  216 ccagtcttgtacttc 230  Q
    | | |||||||||||    
T  42912650 ctaatcttgtacttc 42912664  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 2199747 - 2199653
Alignment:
Q  133 tttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtcccccagtcttgta 226  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||    
T  2199747 tttttatataccacttgtgtactgatttgctgtatcacccgttagggtttgagtttgtggttttctgggtcaggttcatgccccccagtcttgta 2199653  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 26130272 - 26130401
Alignment:
Q  117 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccc 215  Q
    ||||||||||||||| |||| ||||||||||| |||||||| |||  ||| |||| ||| |||||||||  | ||||| | |||||||| ||||||||||    
T  26130272 tgttgtttagagttg-ttttcatttaccacttttgtactgaattgtcgtaccacccgtttgggtttgagtctatggttatctgggtcagattcatgtccc 26130370  T
Q  216 ccagtcttgtacttcttattttatttgaattt 247  Q
    ||||||||||||||| | |||||||| |||||    
T  26130371 ccagtcttgtacttcct-ttttattttaattt 26130401  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 230
Target Start/End: Complemental strand, 26285986 - 26285876
Alignment:
Q  119 ttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatcacc-gttagggtttgagcttgtggttttatgggtcaggttcatgtccccc 217  Q
    |||||||||||||  |||| || |||||||||||| ||||||| ||||||||  |||||||||||||  ||||||| | | ||||||||||||| ||||     
T  26285986 ttgtttagagttg--ttttcttaaccacttgtgtaatgatttgttgtatcacatgttagggtttgagtctgtggttctctaggtcaggttcatgccccct 26285889  T
Q  218 agtcttgtacttc 230  Q
    | |||||||||||    
T  26285888 aatcttgtacttc 26285876  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 32864446 - 32864408
Alignment:
Q  82 attcggtttcgcatccatacgtgggtgcgctgaattgtt 120  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  32864446 attcggtttcgcgtccatacgtgggtgcgctggattgtt 32864408  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 12658554 - 12658654
Alignment:
Q  20 gtgttggcagatgattcatatgcctacttga-tactctgaacacccactttgtgttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattg 118  Q
    ||||||||||||||| |||| | |||||| | |||| |||||| ||||| ||  |||||||| |||||||||||||||||||||||| || |||| ||||    
T  12658554 gtgttggcagatgatccatacgtctactttaatactatgaacaaccactctgcattttttgcaattcggtttcgcatccatacgtggttgtgctggattg 12658653  T
Q  119 t 119  Q
    |    
T  12658654 t 12658654  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 35247748 - 35247794
Alignment:
Q  73 ttttttgcgattcggtttcgcatccatacgtgggtgcgctgaattgt 119  Q
    |||||||| ||| |||||||| ||||||||||||||||||| |||||    
T  35247748 ttttttgcaatttggtttcgcgtccatacgtgggtgcgctggattgt 35247794  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 51925793 - 51925708
Alignment:
Q  133 tttttatttaccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtccccca 218  Q
    ||||||||||||||   |||||||||||| ||||||| | |||||||||||||  ||||||| | ||||||||||||||| ||||||    
T  51925793 tttttatttaccacacttgtactgatttgttgtatcatctgttagggtttgagtctgtggttat-tgggtcaggttcatgcccccca 51925708  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 24886774 - 24886873
Alignment:
Q  117 tgttgtttagagttgctttttatttaccacttgtgtactgatttgatgtatca-ccgttagggtttgagcttgtggttttatgggtcaggttcatgtccc 215  Q
    |||||||||||||||  |||| |||||| ||||||| |||||||| ||||||| |||||||||||||     |||||| | ||||||||||||||| |||    
T  24886774 tgttgtttagagttg--ttttctttaccgcttgtgttctgatttgttgtatcatccgttagggtttgtatcggtggttatctgggtcaggttcatgcccc 24886871  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 27292223 - 27292133
Alignment:
Q  141 taccacttgtgtactgatttgatgtatcaccgttagggtttgagcttgtggttttatgggtcaggttcatgtcccc-cagtcttgtacttc 230  Q
    |||||||| ||| |||||||| |||||| |||||| || |||   |||||||||  ||||||||||| ||| |||| ||||||||||||||    
T  27292223 taccacttatgtgctgatttgttgtatccccgttacgggttgtttttgtggtttactgggtcaggtttatgccccctcagtcttgtacttc 27292133  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 32839191 - 32839149
Alignment:
Q  69 tgtgttttttgcgattcggtttcgcatccatacgtgggtgcgc 111  Q
    |||||||||||| |||||||||||||||||  |||||||||||    
T  32839191 tgtgttttttgcaattcggtttcgcatccacgcgtgggtgcgc 32839149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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