View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5923_low_9 (Length: 321)

Name: NF5923_low_9
Description: NF5923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5923_low_9
NF5923_low_9
[»] chr5 (15 HSPs)
chr5 (1-305)||(3300037-3300345)
chr5 (1-305)||(3392930-3393238)
chr5 (142-274)||(1162254-1162384)
chr5 (142-276)||(40419679-40419810)
chr5 (142-241)||(39880667-39880767)
chr5 (142-241)||(40412756-40412856)
chr5 (1-107)||(1163164-1163275)
chr5 (99-148)||(39880491-39880540)
chr5 (1-42)||(1850403-1850444)
chr5 (154-232)||(17940656-17940731)
chr5 (154-232)||(20030787-20030862)
chr5 (154-232)||(32666908-32666983)
chr5 (4-35)||(38988251-38988282)
chr5 (4-35)||(39880374-39880405)
chr5 (4-35)||(40418829-40418860)
[»] chr4 (1 HSPs)
chr4 (100-141)||(25911657-25911698)
[»] scaffold0089 (1 HSPs)
scaffold0089 (154-232)||(36061-36136)
[»] chr6 (1 HSPs)
chr6 (154-232)||(20515075-20515150)
[»] chr3 (1 HSPs)
chr3 (154-232)||(13369994-13370069)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3300037 - 3300345
Alignment:
Q  1 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtac- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3300037 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacc 3300136  T
Q  100 -------atttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttcttttcacttggaattagtagac 192  Q
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300137 tttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttcttttcacttggaattagtagac 3300236  T
Q  193 tagagtggcaccaaactgtattaatgtgtgatatttacagcttcaccatactgcatgctgtaaaaatctgttatgcagaaaactgcattaatgtgtgata 292  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  3300237 tagagtggcaccaaactgtattaatgtgtgatatttacagtttcaccatac----tgctgtaaaagtctgttatgcagaaaactgcattaatgagtgata 3300332  T
Q  293 tttcacaacttgc 305  Q
    |||||||||||||    
T  3300333 tttcacaacttgc 3300345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 3392930 - 3393238
Alignment:
Q  1 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtac- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3392930 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacc 3393029  T
Q  100 -------atttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttcttttcacttggaattagtagac 192  Q
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393030 tttcaccatttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagttttacttcttttcacttggaattagtagac 3393129  T
Q  193 tagagtggcaccaaactgtattaatgtgtgatatttacagcttcaccatactgcatgctgtaaaaatctgttatgcagaaaactgcattaatgtgtgata 292  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  3393130 tagagtggcaccaaactgtattaatgtgtgatatttacagtttcaccatac----tgctgtaaaagtctgttatgcagaaaactgcattaatgagtgata 3393225  T
Q  293 tttcacaacttgc 305  Q
    |||||||||||||    
T  3393226 tttcacaacttgc 3393238  T

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Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 142 - 274
Target Start/End: Complemental strand, 1162384 - 1162254
Alignment:
Q  142 ttgcactcaaacatggctagttttacttcttttcacttggaattagtagactagagtggcaccaaac--tgtattaatgtgtgatatttacagcttcacc 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  1162384 ttgcaatcaaacatggctagttttacttcttttcacttggaattagtagactaaagtggcaccaaactgtgtattaatgtgtgatatttacagcttcacc 1162285  T
Q  240 atactgcatgctgtaaaaatctgttatgcagaaaa 274  Q
    ||||    |||| ||||| ||||||||||||||||    
T  1162284 atac----tgctctaaaagtctgttatgcagaaaa 1162254  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 276
Target Start/End: Original strand, 40419679 - 40419810
Alignment:
Q  142 ttgcactcaaacatggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgat----atttacagcttca 237  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||  ||||||||||||||| ||||||    |||||||||||||    
T  40419679 ttgcactcaaatatggctagttttacttcttttcacttagaattagtag-ctagagtgg--ccaaactgtattaatctgtgatattaatttacagcttca 40419775  T
Q  238 ccatactgcatgctgtaaaaatctgttatgcagaaaact 276  Q
    |||| |    |||||| ||| |||||||||||| |||||    
T  40419776 ccatgc----tgctgtgaaagtctgttatgcaggaaact 40419810  T

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Target: chr5; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 39880667 - 39880767
Alignment:
Q  142 ttgcactcaaacatggctagttttacttcttttcacttggaattagtagactagagtggca-ccaaactgtattaatgtgtgatatttacagcttcacca 240  Q
    ||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||| || |||||| ||||||||||| || ||||||||    
T  39880667 ttgcattcaaacatggctagtttcgcttctcttcacttggaattagtagactagagtggcacccaagctatattaaagtgtgatatttgcatcttcacca 39880766  T
Q  241 t 241  Q
    |    
T  39880767 t 39880767  T

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Target: chr5; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 40412756 - 40412856
Alignment:
Q  142 ttgcactcaaacatggctagttttacttcttttcacttggaattagtagactagagtggca-ccaaactgtattaatgtgtgatatttacagcttcacca 240  Q
    ||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||| |||| || |||||| ||||||||||| || ||||||||    
T  40412756 ttgcattcaaacatggctagtttcgcttctcttcacttggaattagtagactagagtggcacccaagctatattaaagtgtgatatttgcatcttcacca 40412855  T
Q  241 t 241  Q
    |    
T  40412856 t 40412856  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 1163275 - 1163164
Alignment:
Q  1 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaattatattcggcata 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||    |||||||||||||||    
T  1163275 caatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----attatattcggcata 1163180  T
Q  92 taaagtacatttcacc 107  Q
    |||||| | |||||||    
T  1163179 taaagttcctttcacc 1163164  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q  99 catttcacctcacccttccatttactttcctgtcttccatgtgttgcact 148  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39880491 catttcacctcaccctaccatttactttcctgtcttccatatgttgcact 39880540  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1850403 - 1850444
Alignment:
Q  1 caatttgcaatttctgtttgatatttatgtttattagaacaa 42  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  1850403 caatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 17940731 - 17940656
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||  |||||||||||||||  |||||||||||||    
T  17940731 atggctagtcttacttcttttcacttaaaattagtatactagaatgg--ccaaactgtattaat-agtgatatttacag 17940656  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 20030787 - 20030862
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||  |||||||||||||||  |||||||||||||    
T  20030787 atggctagtcttacttcttttcacttaaaattagtatactagaatgg--ccaaactgtattaat-agtgatatttacag 20030862  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 32666908 - 32666983
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||  |||||||||||||||  |||||||||||||    
T  32666908 atggctagtcttacttcttttcacttaaaattagtatactagaatgg--ccaaactgtattaat-agtgatatttacag 32666983  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 38988251 - 38988282
Alignment:
Q  4 tttgcaatttctgtttgatatttatgtttatt 35  Q
    ||||||||||||||||||||||||||||||||    
T  38988251 tttgcaatttctgtttgatatttatgtttatt 38988282  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 39880374 - 39880405
Alignment:
Q  4 tttgcaatttctgtttgatatttatgtttatt 35  Q
    ||||||||||||||||||||||||||||||||    
T  39880374 tttgcaatttctgtttgatatttatgtttatt 39880405  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 40418829 - 40418860
Alignment:
Q  4 tttgcaatttctgtttgatatttatgtttatt 35  Q
    ||||||||||||||||||||||||||||||||    
T  40418829 tttgcaatttctgtttgatatttatgtttatt 40418860  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q  100 atttcacctcacccttccatttactttcctgtcttccatgtg 141  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25911698 atttcacctcaccctaccatttactttcctgtcttccatgtg 25911657  T

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Target: scaffold0089 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 36061 - 36136
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| |||||| |||  |||||||||||||||  |||||||||||||    
T  36061 atggctagtcttacttcttttcacttaaaattagtatactagaatgg--ccaaactgtattaat-agtgatatttacag 36136  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 20515075 - 20515150
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| || ||| |||  |||||||||||||||  |||||||||||||    
T  20515075 atggctagtcttacttcttttcacttaaaattagtatacaagaatgg--ccaaactgtattaat-agtgatatttacag 20515150  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 13370069 - 13369994
Alignment:
Q  154 atggctagttttacttcttttcacttggaattagtagactagagtggcaccaaactgtattaatgtgtgatatttacag 232  Q
    ||||||||| ||||||||||||||||  |||||||| || ||| |||  |||||||||||||||  |||||||||||||    
T  13370069 atggctagtcttacttcttttcacttaaaattagtatacaagaatgg--ccaaactgtattaat-agtgatatttacag 13369994  T

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