View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924-Insertion-11 (Length: 162)
Name: NF5924-Insertion-11
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924-Insertion-11 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 1e-79; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 1e-79
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 40386533 - 40386380
Alignment:
| Q |
9 |
ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgccgtaattttttcctgcaatttattaaattc |
108 |
Q |
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| T |
40386533 |
ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgctgtaattttttcctgcaatttattaaattc |
40386434 |
T |
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| Q |
109 |
aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgac |
162 |
Q |
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| T |
40386433 |
aatccatgatggtggttttgattgtaatttaagattctccattttttgcatgac |
40386380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 40333255 - 40333103
Alignment:
| Q |
9 |
ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgccgtaattttttcctgcaatttattaaattc |
108 |
Q |
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| T |
40333255 |
ctaaagagaagtgttctaaacttggaattgtagttgaaaatggatcaaaattacatttcttatttagtgctgtaattttttcctgcaacttattaaattc |
40333156 |
T |
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| Q |
109 |
aatccatgatggtggttttgattgtaatttaagattctccattttttgcatga |
161 |
Q |
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| T |
40333155 |
aatccatgatggtggttttgattgtaatttaagattctccattttttgcatga |
40333103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 40376288 - 40376148
Alignment:
| Q |
9 |
ctaaagagaagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttcttatttagtgccgtaattttttcctgcaatttattaaattc |
108 |
Q |
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| T |
40376288 |
ctaaagagaagtgttctaaacttggaattataattgaaaatggatcaaaattacatttcttatttagtgctttaatgttttcctgcaaattattaaattc |
40376189 |
T |
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| Q |
109 |
aatccatgatggtggttttgattgtaatttaagattctcca |
149 |
Q |
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| T |
40376188 |
aatccatgatggtggttttgattgtactgcaagattctcca |
40376148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 40283364 - 40283264
Alignment:
| Q |
61 |
acatttcttatttagtgccgtaattttttcctgcaatttattaaattcaatccatgatggtggttttgattgtaatttaagattctccattttttgcatg |
160 |
Q |
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| T |
40283364 |
acatttcccatttagtgcctttattttttcatataattcattaaattcattccatgatggcggttttgattgtattgtaagattctccatttcttgtatg |
40283265 |
T |
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| Q |
161 |
a |
161 |
Q |
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| T |
40283264 |
a |
40283264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 40598445 - 40598490
Alignment:
| Q |
12 |
aagagaagtgttctaaacttggaattgtagttgaaaatggctcaaa |
57 |
Q |
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| T |
40598445 |
aagagaagtgctctaaacttggaattggagttgaaaatggatcaaa |
40598490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 40277138 - 40277087
Alignment:
| Q |
17 |
aagtgttctaaacttggaattgtagttgaaaatggctcaaaattacatttct |
68 |
Q |
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| T |
40277138 |
aagtgctctaaacttggaattcgagttgaaaatgggtcaaattcacatttct |
40277087 |
T |
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