View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924-Insertion-2 (Length: 890)
Name: NF5924-Insertion-2
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 9 - 876
Target Start/End: Complemental strand, 45025111 - 45024254
Alignment:
| Q |
9 |
atgcgaacaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgc |
108 |
Q |
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| T |
45025111 |
atgcgaacaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgc |
45025012 |
T |
|
| Q |
109 |
ccatatgatggcaaggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattga |
208 |
Q |
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| T |
45025011 |
ccatatgatggcaaggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattga |
45024912 |
T |
|
| Q |
209 |
ccacaaaatgtgtccagtgcactagtaattcccatctggtcaaaacatttatgcatataatataaatgcaatgattactaaataatcctccctctgaatt |
308 |
Q |
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| T |
45024911 |
ccacaaaatgtgtccagtgcactagtaattcccatctgatcaaaacatttatgcatataatataaatgcaatgattactatataatcctccctctgaatt |
45024812 |
T |
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| Q |
309 |
ggcatataaacaaatttggactgaattgtgcatattnnnnnnnnncgagttacaattttcttattataattcattccagcacatgatatgagagtatgtt |
408 |
Q |
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| T |
45024811 |
ggcatataaacaaatttggactgaattgtgcatattaaaaaaa--cgagttacaattttattattataattcagtccagcacatgattagagagtatgtt |
45024714 |
T |
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| Q |
409 |
ttaattttctgaggcttactagtatgttacattacatgcaaagaaaacta-acagggaaaaagtatataataagaatgaaataattgtatataccagtaa |
507 |
Q |
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| T |
45024713 |
ttaattttctgaggcttacaagtatgttaaattacatgcaaagaaaaatatataatatagaagg-tggaa-aagaatgaaataattgtatataccagtaa |
45024616 |
T |
|
| Q |
508 |
tgtgaagccagtaacagatgcaaaggaagtggccatggaagcaccagaaagtgggagagtaccaagatgtccaacaaacataatagaaattgtttgtaga |
607 |
Q |
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| T |
45024615 |
tgtgaagccagtaacagatgcaaaggaagtggccatggaagcaccagaaagtgggagagtaccaagatgtccaacaaacataatagaaattgtttgtaga |
45024516 |
T |
|
| Q |
608 |
atgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcactaactcttgtctctcacttctcatctttg |
707 |
Q |
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| T |
45024515 |
atgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcactaactcttgtctctcacttctcatcattg |
45024416 |
T |
|
| Q |
708 |
atattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatattttaacgggtataagtcatagaaaggaagag |
807 |
Q |
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| T |
45024415 |
atattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatattt-aacgg-tataagtcatagaaag-aaga- |
45024320 |
T |
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| Q |
808 |
aagagaagagtacaaagaaagcagtgaccacaatgaatactgcattcgtcacaaccgaacctccgcaaa |
876 |
Q |
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| T |
45024319 |
---agaagagtacaaagaaagcagtgaccacaatgaataatgcattcgtcacaaccgaacctccgcaaa |
45024254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 30471780 - 30471858
Alignment:
| Q |
152 |
atggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
230 |
Q |
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| T |
30471780 |
atggctctctgcaagtgtattcccaccatatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 30437691 - 30437753
Alignment:
| Q |
169 |
tattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
231 |
Q |
| |
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|||||||| |||||| ||||||| ||||||| || |||||||||||||||||| |||||||| |
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| T |
30437691 |
tattccaaccatatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 30381373 - 30381453
Alignment:
| Q |
151 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
231 |
Q |
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| T |
30381373 |
catggctctttgtgtgtatatgccaaccatatgatattgctttgctccatatgcttgaccacaaaatgtgtctagtgcact |
30381453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 30488965 - 30489010
Alignment:
| Q |
510 |
tgaagccagtaacagatgcaaaggaagtggccatggaagcaccaga |
555 |
Q |
| |
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|||| ||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
30488965 |
tgaaaccagtaacagaagcaaaagaagtagccatggaagcaccaga |
30489010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 30502739 - 30502812
Alignment:
| Q |
151 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtcca |
224 |
Q |
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| T |
30502739 |
catggctctttgcatgtgtatgcctagcatgcggtactgctttgcgccatatgactggccacataatgtgtcca |
30502812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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