View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924-Insertion-3 (Length: 842)
Name: NF5924-Insertion-3
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 740; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 740; E-Value: 0
Query Start/End: Original strand, 9 - 842
Target Start/End: Complemental strand, 25252375 - 25251550
Alignment:
| Q |
9 |
attgattctcctgtggtggctgttttgtgtatgacttgcagtcaggtttgcttcttgttttgtattggacatatttcttattctgataaggagttcttcg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252375 |
attgattctcctgtggtggctgttttgtgtatgacttgcagtcaggtttgcttctagttttgtattggacatatttcttattctgataaggagttcttcg |
25252276 |
T |
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| Q |
109 |
tataatgataacataaagccagttctcgtgtgtctcatccttaaatagttctggcgaaagtgctgctgataatgtatttttctaagtcgtgttgtcaatt |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252275 |
tataatcataacataaagccagttctcgtgtgtctcatccttaaatagttctggcgaaagtgctgctgataatgtatttttctaagtcgtgttgtcaatt |
25252176 |
T |
|
| Q |
209 |
gcaaatagcagaaaataatggtttattgaagctactgtgcacaacagtggtatagcgctgattgcgctatagctgttattagacaacattttgtactaaa |
308 |
Q |
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| T |
25252175 |
gcaaatagcagaaaataatggtttattgaagctactgtacacaacagtggtatagcgctgattgcgctatagctgttattagacaacattttgtactaaa |
25252076 |
T |
|
| Q |
309 |
tagagcgtatcacgaaacaagagcgatttgttcaaatacttttaggttatattactatagaaccaccatcgttacagccattatttgacaacatagtcac |
408 |
Q |
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| T |
25252075 |
t--agcgtatcacgaaacaagagcgatttgttcaaatacttttaggttatattactatagaaccaccaccgttacagccattatttgacaacatagtcac |
25251978 |
T |
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| Q |
409 |
cgaagtcagagtcttgtataatttttatcatagttttcagttcataccagatgcttcatattcttcaactttgacagcaacgttaaattttcattgataa |
508 |
Q |
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| T |
25251977 |
cgaagtcagagtcttgtataatttttatcatagttttcagttcataccagatgcttcatattcttcaactttgacagcaacgtt-aattttcattgataa |
25251879 |
T |
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| Q |
509 |
cagtgtcttggaacttctc-ttaagacagcattactatacatttctttttcgcttaacattatctaaaattaaaaattagatagtgtttgttcatccact |
607 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
25251878 |
cagtgtcttggaacttctctttaagacagcattactatacatttctttttcgcttaacattatctaaaatt-aaaattagatagtgtttgctcatccact |
25251780 |
T |
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| Q |
608 |
agttccattgaactttctcgttcctcacttgtttaaatttgtcctgaacagggaactgacgcattctctcagtctggattatattcaaaccatcaagata |
707 |
Q |
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| T |
25251779 |
agttccattgaactttctcgttcctcacttgtttaaatttgtcctgaacagggaactgacgcattctctcagtctggattatattcaaaccatcaagata |
25251680 |
T |
|
| Q |
708 |
tagcccctagatattctgtaagtggattcattgtacctggaattttcaagtaccgttgaattttataatttctaaattcagaataagaatgcaaaaaaca |
807 |
Q |
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| T |
25251679 |
tagcccctagatattctgtaagtggattcattgtacctggaattttc-agtaccgttgaattttataa-ttctaaattcagaataagaatgc-aaaaaca |
25251583 |
T |
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| Q |
808 |
gacaaatttgtttataagatttctaatattcattt |
842 |
Q |
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|||||| ||||||||||||||||| |||||||||| |
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| T |
25251582 |
gacaaa-ttgtttataagatttct-atattcattt |
25251550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 51295736 - 51295684
Alignment:
| Q |
290 |
gacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaa |
344 |
Q |
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| T |
51295736 |
gacaacattttgtactaaat--agcgtatcacgaaacaataacgatttgatcaaa |
51295684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 2733005 - 2732937
Alignment:
| Q |
275 |
ctatagctgttattagacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaat |
345 |
Q |
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||||||||| |||| |||||||||||||||||||| ||| |||| | |||||| |||||||||||||||| |
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| T |
2733005 |
ctatagctgctatttgacaacattttgtactaaat--agcatatcgcaaaacaatagcgatttgttcaaat |
2732937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 290 - 345
Target Start/End: Original strand, 30601045 - 30601102
Alignment:
| Q |
290 |
gacaacattttgtactaaataga--gcgtatcacgaaacaagagcgatttgttcaaat |
345 |
Q |
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| T |
30601045 |
gacaacattttgttctaaataaaaggcgtatcacggaacaaaagcgatttgttcaaat |
30601102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 9163815 - 9163757
Alignment:
| Q |
285 |
tattagacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaat |
345 |
Q |
| |
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|||| |||||||||||||||||||| ||||||| ||| ||||| || ||||||||||||| |
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| T |
9163815 |
tatttgacaacattttgtactaaat--agcgtataacggaacaatagggatttgttcaaat |
9163757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 15606319 - 15606357
Alignment:
| Q |
273 |
cgctatagctgttattagacaacattttgtactaaatag |
311 |
Q |
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| T |
15606319 |
cgctatagctgttatttgacaacattttgtactaaatag |
15606357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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