View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5924-Insertion-7 (Length: 377)

Name: NF5924-Insertion-7
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5924-Insertion-7
NF5924-Insertion-7
[»] chr4 (1 HSPs)
chr4 (8-377)||(44962467-44962842)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 377
Target Start/End: Complemental strand, 44962842 - 44962467
Alignment:
Q  8 atttttctcctacaattgataattcaatgtcttgttcaatacaaggaaagctagcatttttgctagccttatttgtttccattacatatatatgtcacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44962842 atttttctcctacaattgataattcaatgtcttgttcaatacaaggaaagctagcatttttgctagccttatttgtttccattacatatatatgtcacaa 44962743  T
Q  108 ataatatcactcgaactgtcaatttaattgttattattatgagctagtttagttctatgagaatagggtctcnnnnnnnnnn------gttctataataa 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||    
T  44962742 ataatatcaatcgaactgtcaatttaattgttattattatgagctagtttagttctatgagaatagggtctcaaaaaaaaaaaaaaaagttctataataa 44962643  T
Q  202 gaaactatatagatagcctcttcttaaatgcatagaaaatgaaattggtttctgtgtagttaatttaatttgctcacatgagctgaaaaggaacagtgtc 301  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44962642 gaaactatatagatagcctcttcttaaatgcaaagaaaatgaaattggtttctgtgtagttaatttaatttgctcacatgagctgaaaaggaacagtgtc 44962543  T
Q  302 agcctcaacttcaagtaaaggaaaaaactcatgaggattcaatcgaactctaaccaataaaaatgttgaaatagac 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44962542 agcctcaacttcaagtaaaggaaaaaactcatgaggattcaatcgaattctaaccaataaaaatgttgaaatagac 44962467  T

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