View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924-Insertion-8 (Length: 310)
Name: NF5924-Insertion-8
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 34820616 - 34820499
Alignment:
| Q |
109 |
gaagaagaagagtcgttgactttgacaagaatattt----gtttttgaatatgccccaaatggacattatttgagcatttacatagagagtactcgttag |
204 |
Q |
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| T |
34820616 |
gaagaagaagagtagttgactttgacaagaatatttatttgtttttgaatatgccccaaatggacattatttgagcatttacatagagagtactcgttag |
34820517 |
T |
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| Q |
205 |
ccattacacaataacaaa |
222 |
Q |
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| T |
34820516 |
ccattacacaataacaaa |
34820499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 34819620 - 34819565
Alignment:
| Q |
215 |
ataacaaaatatcttcttctcaattgttgattcatttgatcccggcattaatattt |
270 |
Q |
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| T |
34819620 |
ataacaaaatatcttcttctcaattgttgattcatttgatcccggtattaatattt |
34819565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 34818685 - 34818643
Alignment:
| Q |
268 |
ttttttgtcaatgtctttattccttgggaacgtacaactcttt |
310 |
Q |
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| T |
34818685 |
ttttttgtcaatgtctttattccttgggaacatacaactcttt |
34818643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 37747902 - 37747761
Alignment:
| Q |
49 |
tagacacattatcaaa-gtgaacccacgagaattttgtcaatcttattagatagatactgtgaagaagaagagtcgttgactttgacaagaatatttgtt |
147 |
Q |
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| T |
37747902 |
tagacacattatcaaaagtgaacc-acaagaattttgtcaatcttattggatat----tgtgaagaagaagagcc------tttcaccagaatgttggtt |
37747814 |
T |
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| Q |
148 |
tttgaatatgccccaaatgg-acattatttgagcatttacatagagagtactc |
199 |
Q |
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| T |
37747813 |
tttgaatatgccccaaatggaacactatttgagcatttacatagtgagtactc |
37747761 |
T |
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