View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924_high_4 (Length: 355)
Name: NF5924_high_4
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 44962842 - 44962509
Alignment:
| Q |
16 |
atttttctcctacaattgataattcaatgtcttgttcaatacaaggaaagctagcatttttgctagccttatttgtttccattacatatatatgtcacaa |
115 |
Q |
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| T |
44962842 |
atttttctcctacaattgataattcaatgtcttgttcaatacaaggaaagctagcatttttgctagccttatttgtttccattacatatatatgtcacaa |
44962743 |
T |
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| Q |
116 |
ataatatcactcgaactgtcaatttaattgttattattatgagctagtttagttctatgagaatagggtctc-------nnnnnnnnngttctataataa |
208 |
Q |
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| T |
44962742 |
ataatatcaatcgaactgtcaatttaattgttattattatgagctagtttagttctatgagaatagggtctcaaaaaaaaaaaaaaaagttctataataa |
44962643 |
T |
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| Q |
209 |
gaaactatatagatagcctcttcttaaatgcatagaaaatgaaattggtttctgtgtagttaatttaatttgctcacatgagctgaaaaggaacagtgtc |
308 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44962642 |
gaaactatatagatagcctcttcttaaatgcaaagaaaatgaaattggtttctgtgtagttaatttaatttgctcacatgagctgaaaaggaacagtgtc |
44962543 |
T |
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| Q |
309 |
agcctcaacttcaagtaaaggaaaaaactcatga |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44962542 |
agcctcaacttcaagtaaaggaaaaaactcatga |
44962509 |
T |
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