View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5924_low_1 (Length: 661)

Name: NF5924_low_1
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5924_low_1
NF5924_low_1
[»] chr4 (4 HSPs)
chr4 (21-455)||(21837178-21837612)
chr4 (458-650)||(21838160-21838351)
chr4 (465-588)||(1053143-1053267)
chr4 (548-593)||(51282094-51282139)
[»] chr7 (2 HSPs)
chr7 (234-416)||(22297016-22297198)
chr7 (458-593)||(22297807-22297942)
[»] chr6 (3 HSPs)
chr6 (499-588)||(13084175-13084264)
chr6 (540-589)||(14050191-14050240)
chr6 (232-312)||(13084847-13084927)
[»] chr8 (5 HSPs)
chr8 (469-583)||(16910285-16910400)
chr8 (510-588)||(27244255-27244333)
chr8 (502-593)||(40600612-40600703)
chr8 (544-588)||(4401635-4401679)
chr8 (552-593)||(14707033-14707074)
[»] chr2 (8 HSPs)
chr2 (499-583)||(34595240-34595324)
chr2 (469-588)||(9560033-9560153)
chr2 (541-588)||(6850289-6850336)
chr2 (541-588)||(10174691-10174738)
chr2 (548-602)||(1521642-1521696)
chr2 (233-307)||(34595907-34595981)
chr2 (548-599)||(1522394-1522445)
chr2 (537-586)||(9157715-9157764)
[»] chr3 (9 HSPs)
chr3 (540-593)||(53343107-53343160)
chr3 (551-593)||(7050983-7051025)
chr3 (543-593)||(52717709-52717759)
chr3 (548-593)||(25694863-25694908)
chr3 (547-590)||(25694119-25694162)
chr3 (559-593)||(32558220-32558254)
chr3 (548-593)||(32558810-32558855)
chr3 (548-593)||(45781552-45781597)
chr3 (548-593)||(52717124-52717169)
[»] chr5 (6 HSPs)
chr5 (502-593)||(38558948-38559039)
chr5 (548-590)||(6695792-6695834)
chr5 (548-593)||(6697370-6697415)
chr5 (232-281)||(29594906-29594955)
chr5 (230-262)||(23257317-23257349)
chr5 (231-287)||(27345912-27345968)
[»] chr1 (3 HSPs)
chr1 (540-588)||(1101018-1101066)
chr1 (547-586)||(45499984-45500023)
chr1 (543-593)||(8641897-8641947)
[»] scaffold0340 (1 HSPs)
scaffold0340 (226-262)||(9343-9379)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 21 - 455
Target Start/End: Original strand, 21837178 - 21837612
Alignment:
Q  21 tttgtttaatacgtatatatgatgctcaccttcatgagagaactttgtaaagcatctttgagccgcctcaaatatatgtgatacctgcaagccactttta 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21837178 tttgtttaatacgtatatatgatgctcaccttcatgagagaactttgtaaaggatctttgagccgcctcaaatatatgtgatacctgcaagccactttta 21837277  T
Q  121 aggttgacgattgtatatcaacatttgtgaaaggatattgaaacttgaaaccagatgggtaatttcgtggtcttctaaaggatttttgactcacaattca 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21837278 aggttgacgattgtatatcaacatttgtgaaaggatattgaaacttgaaaccagatgggtaatttcgtggtcttctaaacgatttttgactcacaattca 21837377  T
Q  221 taagaaattatggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaa 320  Q
    ||||||||||||||||||||||| |||||||||||||||||| | |||| | | ||||||||||||||||||||||||||||||||||||||| ||||||    
T  21837378 taagaaattatggtggattctagggtgagggtccaactaagtccctcaccggtttaccactaattttaacctttagattaaatagacccacacgatttaa 21837477  T
Q  321 ttattcatcaccgcaccggatctttgcacgttgcatctgcactctaccaaatttcttctctctcaaatgttcatggctgcatttctgcaatccaaaatgg 420  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21837478 ttattcatcaccgcactggatctttgcacgttgcatctgcactctaccaaatttcttctctctcaaatgttcatggctgcatttctgcaatccaaaatgg 21837577  T
Q  421 gagttttgtctgaaacgtgtttttcgcattgtttg 455  Q
    |||||||||||| ||||||||||||||||||||||    
T  21837578 gagttttgtctgtaacgtgtttttcgcattgtttg 21837612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 458 - 650
Target Start/End: Original strand, 21838160 - 21838351
Alignment:
Q  458 gaaagttattatgtgagtaaagatgcacgtattctctttacttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccg 557  Q
    |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21838160 gaaagttattgtgtgagtaaagatgcacgtattctctttacttttttaactcatctaaacctttaaatatatcttgatggtatataaaagtggtccaccg 21838259  T
Q  558 atgaaccacttaattgatggttcaccctagaatccaactgaaattatagtatgtgattgtttaaagttttttatgaaagtttattgtttgatg 650  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21838260 atgaaccacttaattgatggttcatcctagaatccaacagaaattatagtatgtgattgtttaaagttttttatg-aagtttattgtttgatg 21838351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 588
Target Start/End: Complemental strand, 1053267 - 1053143
Alignment:
Q  465 attatgtgagtaaagatgcacgtattctc-tttacttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaac 563  Q
    |||||||||| ||| ||| |||| ||||| ||| ||||| ||  | ||||| ||||||| |||||||||||| ||||||||||||| | ||||| | |||    
T  1053267 attatgtgagcaaaaatgtacgtgttctcattttcttttatatttaatctacacctttatatatatcttgatggtatataaaagtgattcaccggtaaac 1053168  T
Q  564 cacttaattgatggttcaccctaga 588  Q
     | ||||||||||||||||||||||    
T  1053167 tatttaattgatggttcaccctaga 1053143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 51282094 - 51282139
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||| ||||||||||  |||||||||||||||||||||||    
T  51282094 tggtccaccggtgaaccacttgtttgatggttcaccctagaatcca 51282139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 4e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 234 - 416
Target Start/End: Original strand, 22297016 - 22297198
Alignment:
Q  234 tggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccacactatttaattattcatcaccg 333  Q
    |||||||||| ||||| |||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22297016 tggattctagggtgagagtccaactaagtccctcaccgatgtaccactaattttaacctttagattaaatagacccacacgatttaattattcatcaccg 22297115  T
Q  334 caccggatctttgcacgttgcatctgcactctaccaaatttcttctctctcaaatgttcatggctgcatttctgcaatccaaa 416  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22297116 cactggatctttgcacgttgcatctgcactctaccagatttcttctctctcaaatgttcatggctgcatttctgcaatccaaa 22297198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 458 - 593
Target Start/End: Original strand, 22297807 - 22297942
Alignment:
Q  458 gaaagttattatgtgagtaaagatgcacgtattctctttacttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccg 557  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22297807 gaaagttattgtgtgagtaaagatgcacgtattctccttacttttctaactcatctaaacctttaaatatatcttgatggtatataaaagtggtccaccg 22297906  T
Q  558 atgaaccacttaattgatggttcaccctagaatcca 593  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22297907 atgaaccacttaattgatggttcactctagaatcca 22297942  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 499 - 588
Target Start/End: Complemental strand, 13084264 - 13084175
Alignment:
Q  499 ttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    |||||||  ||||||| |||||||||||||||||||| ||||| | |||||||||| || ||||||||||||||||||||||||||||||    
T  13084264 ttttctatttcatctagacctttaaatatatcttgatggtatacataagtggtccatcggtgaaccacttaattgatggttcaccctaga 13084175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 589
Target Start/End: Complemental strand, 14050240 - 14050191
Alignment:
Q  540 tataaaagtggtccaccgatgaaccacttaattgatggttcaccctagaa 589  Q
    ||||||||| || ||||||||||||||||  ||||||||||| |||||||    
T  14050240 tataaaagtagttcaccgatgaaccacttgtttgatggttcatcctagaa 14050191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 13084927 - 13084847
Alignment:
Q  232 ggtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagacccaca 312  Q
    |||| ||||||| |||||||| |||||||||   |||| | | ||||||||| ||| |||||||||||||| |||| ||||    
T  13084927 ggtgaattctagggtgagggttcaactaagtctctcaccggtgtaccactaactttgacctttagattaaaaagactcaca 13084847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 469 - 583
Target Start/End: Complemental strand, 16910400 - 16910285
Alignment:
Q  469 tgtgagtaaagatgcacgtattctc-tttacttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccact 567  Q
    |||||| ||||||| | || ||||| ||| ||||||||  ||||||| |||||| ||||||||||||| ||||| ||| |||||||||||||||||||||    
T  16910400 tgtgagaaaagatgtatgtgttctcattttcttttctatttcatctagacctttgaatatatcttgatggtatacaaaggtggtccaccgatgaaccact 16910301  T
Q  568 taattgatggttcacc 583  Q
    || |||||||||||||    
T  16910300 tagttgatggttcacc 16910285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 510 - 588
Target Start/End: Original strand, 27244255 - 27244333
Alignment:
Q  510 atctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    ||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  27244255 atctacacctttatatatatcttgatggtatataaaagtggtccaccggtgaactatttaattgatggttcaccctaga 27244333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 593
Target Start/End: Original strand, 40600612 - 40600703
Alignment:
Q  502 tctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||| | ||||||||||||| |  |  ||||| || ||||||  |||||||||||||||||||||| ||||||||||| |||| ||||||    
T  40600612 tctaacacgtctaaacctttaatttaaatttgatggtgtataaagatggtccaccgatgaaccacttatttgatggttcatcctaaaatcca 40600703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 588
Target Start/End: Complemental strand, 4401679 - 4401635
Alignment:
Q  544 aaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||    
T  4401679 aaagtggttcaccgatgaaccacttatttgatggttcaccttaga 4401635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 593
Target Start/End: Original strand, 14707033 - 14707074
Alignment:
Q  552 ccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||| ||||||||||  |||||||||||||||||||||||    
T  14707033 ccaccggtgaaccacttgtttgatggttcaccctagaatcca 14707074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 583
Target Start/End: Complemental strand, 34595324 - 34595240
Alignment:
Q  499 ttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccacttaattgatggttcacc 583  Q
    |||||||  ||||||| |||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||||||||||    
T  34595324 ttttctatttcatctagacctttaaatatatcttgatggtatacataagtagtccactgatgaaccacttaattgatggttcacc 34595240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 469 - 588
Target Start/End: Complemental strand, 9560153 - 9560033
Alignment:
Q  469 tgtgagtaaagatgcacgtattctc-tttacttttctaactcatctaaacctttaaatatatcttgattgtatataaaagtggtccaccgatgaaccact 567  Q
    |||||||||||||| || | ||||| ||| ||||||||||||||||||| | ||||| |||||||||| ||||||||| |||   || || ||||||| |    
T  9560153 tgtgagtaaagatgtacatgttctccttttcttttctaactcatctaaaacattaaaaatatcttgatggtatataaaggtgtcgcatcggtgaaccagt 9560054  T
Q  568 taattgatggttcaccctaga 588  Q
    |||||||||||||| ||||||    
T  9560053 taattgatggttcatcctaga 9560033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 588
Target Start/End: Complemental strand, 6850336 - 6850289
Alignment:
Q  541 ataaaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    ||||||||||||||||||||||||||||| || ||| |||||||||||    
T  6850336 ataaaagtggtccaccgatgaaccacttattttatgcttcaccctaga 6850289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 10174691 - 10174738
Alignment:
Q  541 ataaaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  10174691 ataaaagtggtccaccggtgaaccatttagttgatggttcaccctaga 10174738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 602
Target Start/End: Complemental strand, 1521696 - 1521642
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatccaactgaaatt 602  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||| || |||||    
T  1521696 tggtccaccggtgaaccacttgtttgatggttcaccctagaatccacctaaaatt 1521642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 34595981 - 34595907
Alignment:
Q  233 gtggattctagagtgagggtccaactaagttcttcacagatataccactaattttaacctttagattaaatagac 307  Q
    |||||||||||||||||||| ||||||| | | |||| | | ||||||||||||| ||||||| |||||| ||||    
T  34595981 gtggattctagagtgagggttcaactaaatccctcaccggtgtaccactaattttgacctttaaattaaaaagac 34595907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 599
Target Start/End: Original strand, 1522394 - 1522445
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatccaactgaa 599  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||| |||||    
T  1522394 tggtccaccggtgaaccacttgtttgatggttcatcctagaatccacctgaa 1522445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 9157715 - 9157764
Alignment:
Q  537 gtatataaaagtggtccaccgatgaaccacttaattgatggttcacccta 586  Q
    |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  9157715 gtatttaaaagtggttcaccggtgaaccacttatttgatggttcatccta 9157764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 593
Target Start/End: Complemental strand, 53343160 - 53343107
Alignment:
Q  540 tataaaagtggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  53343160 tataaaggtggtccaccgatgaaccacttatttgatggttcatcctagaatcca 53343107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 593
Target Start/End: Original strand, 7050983 - 7051025
Alignment:
Q  551 tccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||||| |||||| |||||||||||||||||||||||    
T  7050983 tccaccgatgaatcacttatttgatggttcaccctagaatcca 7051025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 52717709 - 52717759
Alignment:
Q  543 aaaagtggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||||| | |||||||| ||| |||||||||||||||||||||||    
T  52717709 aaaagtggtccatccatgaaccatttagttgatggttcaccctagaatcca 52717759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 25694863 - 25694908
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||    
T  25694863 tggtccaccgatgaaccacttatatgatggttcactctagaatcca 25694908  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 590
Target Start/End: Complemental strand, 25694162 - 25694119
Alignment:
Q  547 gtggtccaccgatgaaccacttaattgatggttcaccctagaat 590  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||    
T  25694162 gtggtccaccgatgaatcacttaattggtggttcaccttagaat 25694119  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 559 - 593
Target Start/End: Complemental strand, 32558254 - 32558220
Alignment:
Q  559 tgaaccacttaattgatggttcaccctagaatcca 593  Q
    ||||||||||| |||||||||||||||||||||||    
T  32558254 tgaaccacttagttgatggttcaccctagaatcca 32558220  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 32558810 - 32558855
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||| |||| |||||| ||||||||||||||| |||||||    
T  32558810 tggtccaccggtgaatcacttatttgatggttcaccctggaatcca 32558855  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 45781597 - 45781552
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||| ||||||| ||  |||||||||||||||||||||||    
T  45781597 tggtccaccggtgaaccatttgtttgatggttcaccctagaatcca 45781552  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 593
Target Start/End: Complemental strand, 52717169 - 52717124
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||| |||| || ||| |||||||||||||||||||||||    
T  52717169 tggtccaccggtgaatcagttatttgatggttcaccctagaatcca 52717124  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 593
Target Start/End: Complemental strand, 38559039 - 38558948
Alignment:
Q  502 tctaactcatctaaacctttaaat-atatcttgattgtatataaaagtggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||| ||||||||||||||| | | |||| ||| || |||||| ||||||||||||||||||||||| || |||||||| |||||||||||    
T  38559039 tctaacacatctaaacctttaatttaaatct-gatggtgtataaaggtggtccaccgatgaaccacttatttaatggttcatcctagaatcca 38558948  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 590
Target Start/End: Complemental strand, 6695834 - 6695792
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaat 590  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  6695834 tggtccaccggtgaaccacttatttgatggttcaccctagaat 6695792  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 6697370 - 6697415
Alignment:
Q  548 tggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||    
T  6697370 tggtccgccggtgaaccacttatttgatggttcaccctagaatcca 6697415  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 29594906 - 29594955
Alignment:
Q  232 ggtggattctagagtgagggtccaactaagttcttcacagatataccact 281  Q
    |||||||||||| |||||||| ||| |||||||||||| ||| |||||||    
T  29594906 ggtggattctagggtgagggttcaattaagttcttcaccgatgtaccact 29594955  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 262
Target Start/End: Original strand, 23257317 - 23257349
Alignment:
Q  230 atggtggattctagagtgagggtccaactaagt 262  Q
    ||||||||||||||||||||||||||| |||||    
T  23257317 atggtggattctagagtgagggtccaattaagt 23257349  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 27345968 - 27345912
Alignment:
Q  231 tggtggattctagagtgagggtccaactaagttcttcacagatataccactaatttt 287  Q
    ||||||||||||| |||||||| ||| ||||| | |||| ||||||||||| |||||    
T  27345968 tggtggattctagggtgagggttcaattaagtccctcaccgatataccacttatttt 27345912  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 588
Target Start/End: Original strand, 1101018 - 1101066
Alignment:
Q  540 tataaaagtggtccaccgatgaaccacttaattgatggttcaccctaga 588  Q
    ||||||||||||||||| |||||||||||  ||||||||||||| ||||    
T  1101018 tataaaagtggtccaccaatgaaccacttggttgatggttcaccttaga 1101066  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 586
Target Start/End: Complemental strand, 45500023 - 45499984
Alignment:
Q  547 gtggtccaccgatgaaccacttaattgatggttcacccta 586  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  45500023 gtggtccaccggtgaaccacttatttgatggttcacccta 45499984  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 8641897 - 8641947
Alignment:
Q  543 aaaagtggtccaccgatgaaccacttaattgatggttcaccctagaatcca 593  Q
    |||||||||||| ||   ||||||||| |||||||||||||||||||||||    
T  8641897 aaaagtggtccatcggaaaaccacttagttgatggttcaccctagaatcca 8641947  T

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Target: scaffold0340 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 9343 - 9379
Alignment:
Q  226 aattatggtggattctagagtgagggtccaactaagt 262  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  9343 aattatggtggattctagagtgaaggtccaaccaagt 9379  T

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