View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5924_low_2 (Length: 489)
Name: NF5924_low_2
Description: NF5924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5924_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 25252375 - 25251912
Alignment:
| Q |
17 |
attgattctcctgtggtggctgttttgtgtatgacttgcagtcaggtttgcttcttgttttgtattggacatatttcttattctgataaggagttcttcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252375 |
attgattctcctgtggtggctgttttgtgtatgacttgcagtcaggtttgcttctagttttgtattggacatatttcttattctgataaggagttcttcg |
25252276 |
T |
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| Q |
117 |
tataatgataacataaagccagttctcgtgtgtctcatccttaaatagttctggcgaaagtgctgctgataatgtatttttctaagtcgtgttgtcaatt |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25252275 |
tataatcataacataaagccagttctcgtgtgtctcatccttaaatagttctggcgaaagtgctgctgataatgtatttttctaagtcgtgttgtcaatt |
25252176 |
T |
|
| Q |
217 |
gcaaatagcagaaaataatggtttattgaagctactgtgcacaacagtggtatagcgctgattgcgctatagctgttattagacaacattttgtactaaa |
316 |
Q |
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| T |
25252175 |
gcaaatagcagaaaataatggtttattgaagctactgtacacaacagtggtatagcgctgattgcgctatagctgttattagacaacattttgtactaaa |
25252076 |
T |
|
| Q |
317 |
tagagcgtatcacgaaacaagagcgatttgttcaaatacttttaggttatattactatagaaccaccatcgttacagccattatttgacaacatagtcac |
416 |
Q |
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| T |
25252075 |
t--agcgtatcacgaaacaagagcgatttgttcaaatacttttaggttatattactatagaaccaccaccgttacagccattatttgacaacatagtcac |
25251978 |
T |
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| Q |
417 |
cgaagtcagagtcttgtataatttttatcatagttttcagttcataccagatgcttcatattcttc |
482 |
Q |
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| T |
25251977 |
cgaagtcagagtcttgtataatttttatcatagttttcagttcataccagatgcttcatattcttc |
25251912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 51295736 - 51295684
Alignment:
| Q |
298 |
gacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaa |
352 |
Q |
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|||||||||||||||||||| ||||||||||||||||| | ||||||| ||||| |
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| T |
51295736 |
gacaacattttgtactaaat--agcgtatcacgaaacaataacgatttgatcaaa |
51295684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 353
Target Start/End: Complemental strand, 2733005 - 2732937
Alignment:
| Q |
283 |
ctatagctgttattagacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaat |
353 |
Q |
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| T |
2733005 |
ctatagctgctatttgacaacattttgtactaaat--agcatatcgcaaaacaatagcgatttgttcaaat |
2732937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 30601045 - 30601102
Alignment:
| Q |
298 |
gacaacattttgtactaaataga--gcgtatcacgaaacaagagcgatttgttcaaat |
353 |
Q |
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||||||||||||| ||||||| | |||||||||| ||||| |||||||||||||||| |
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| T |
30601045 |
gacaacattttgttctaaataaaaggcgtatcacggaacaaaagcgatttgttcaaat |
30601102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 9163815 - 9163757
Alignment:
| Q |
293 |
tattagacaacattttgtactaaatagagcgtatcacgaaacaagagcgatttgttcaaat |
353 |
Q |
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|||| |||||||||||||||||||| ||||||| ||| ||||| || ||||||||||||| |
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| T |
9163815 |
tatttgacaacattttgtactaaat--agcgtataacggaacaatagggatttgttcaaat |
9163757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 15606319 - 15606357
Alignment:
| Q |
281 |
cgctatagctgttattagacaacattttgtactaaatag |
319 |
Q |
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| T |
15606319 |
cgctatagctgttatttgacaacattttgtactaaatag |
15606357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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