View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5925-Insertion-1 (Length: 728)
Name: NF5925-Insertion-1
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5925-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 182 - 479
Target Start/End: Complemental strand, 1109169 - 1108876
Alignment:
| Q |
182 |
aatatatgctttcttcttcacatccttatacgtatttctctgcacatgatctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
281 |
Q |
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| T |
1109169 |
aatatatgctttcttcttcacatcgttatacatatttctctg-ac---atctgtagcatctgcaggaaggggttccatgccattattgatctcaatctgt |
1109074 |
T |
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| Q |
282 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacagattttgccttcacgaactgggagattcacgtgaaatttttgtt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1109073 |
tcagacacattgtgaactgcaaagatcacattcatatgtctgaaccatcgttcacagattttgccttcacgaactgggagattcacgtgaaatttctgtt |
1108974 |
T |
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| Q |
382 |
tccttccactttgacaatcttaagtgtgagatgaaatatttagaagaataagagaatataaaaaactatgtgaatctcattgaatagagaaaatcaaa |
479 |
Q |
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| T |
1108973 |
tccttccactttgacaatcttaagtgtgagatgaaatatttagaagaataagagaatataaaaaactatgtgaatctcattgaatagagaagatcaaa |
1108876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 547 - 728
Target Start/End: Complemental strand, 1108866 - 1108688
Alignment:
| Q |
547 |
ctatcaagtaaccccgtaatcaagttaatctataactaacttttctcaacttattagctaacttgtagcttaagaaacaaacaaactaaccacttattgt |
646 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1108866 |
ctatcaagtaaccctgtaatcaagttaatctatcactaacttttctcaacttattagctaacttgtagcttaagaaacaaactaactaaccacttattg- |
1108768 |
T |
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| Q |
647 |
ttatttgaattacaaaactaatactctaaattccttt-aatctgaatcaactaattaagaacttaatctaattaatcaagtcc |
728 |
Q |
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| T |
1108767 |
---tttgaattacaaaactaatactctaaattcctttaaatctgaatcaactaattaagaacttaatctaattaatcatgtcc |
1108688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 443 - 509
Target Start/End: Complemental strand, 33830300 - 33830234
Alignment:
| Q |
443 |
aaaactatgtgaatctcattgaatagagaaaatcaaatttacaaagtgcattaaccctatatatata |
509 |
Q |
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|||||| ||| ||||| ||||||| ||||| || || |||||||||||||||||||||||||||| |
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| T |
33830300 |
aaaactgtgtaaatcttattgaatggagaagatgcaaaatacaaagtgcattaaccctatatatata |
33830234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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