View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5925-Insertion-2 (Length: 330)

Name: NF5925-Insertion-2
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5925-Insertion-2
NF5925-Insertion-2
[»] chr1 (11 HSPs)
chr1 (8-330)||(1856705-1857027)
chr1 (12-326)||(1816021-1816335)
chr1 (8-328)||(1868302-1868625)
chr1 (8-328)||(1842693-1843016)
chr1 (106-241)||(9170766-9170901)
chr1 (106-326)||(9200333-9200553)
chr1 (117-281)||(9218860-9219024)
chr1 (106-289)||(9118329-9118512)
chr1 (106-241)||(9161940-9162075)
chr1 (106-226)||(9156028-9156148)
chr1 (106-232)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (168-326)||(37567651-37567809)
chr7 (46-173)||(37572119-37572246)
chr7 (149-193)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (111-190)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 1857027 - 1856705
Alignment:
Q  8 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1857027 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 1856928  T
Q  108 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagaga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1856927 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagaga 1856828  T
Q  208 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856827 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 1856728  T
Q  308 aactgtaccaaaacctcctttac 330  Q
    |||||||||||||||||||||||    
T  1856727 aactgtaccaaaacctcctttac 1856705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 326
Target Start/End: Original strand, 1816021 - 1816335
Alignment:
Q  12 agatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagag 111  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||||| ||||||||  |||| ||||||||||||| |||| ||| ||||||||||||||    
T  1816021 agatatgacagagctccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagag 1816120  T
Q  112 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1816121 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaac 1816220  T
Q  212 atccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaact 311  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  1816221 atccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaact 1816320  T
Q  312 gtaccaaaacctcct 326  Q
    |||||||||||||||    
T  1816321 gtaccaaaacctcct 1816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 1868625 - 1868302
Alignment:
Q  8 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 104  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1868625 atgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1868526  T
Q  105 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 204  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1868525 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1868426  T
Q  205 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 304  Q
    ||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1868425 agagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtccttt 1868326  T
Q  305 gtaaactgtaccaaaacctccttt 328  Q
    | |||| ||||||||||| |||||    
T  1868325 gaaaacggtaccaaaaccaccttt 1868302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 1843016 - 1842693
Alignment:
Q  8 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 104  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1843016 atgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1842917  T
Q  105 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 204  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1842916 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1842817  T
Q  205 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 304  Q
    ||| || |   ||||||||||||||||| |  ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1842816 agagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatccttt 1842717  T
Q  305 gtaaactgtaccaaaacctccttt 328  Q
    |||||| ||||||||||| |||||    
T  1842716 gtaaacagtaccaaaaccaccttt 1842693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 9170766 - 9170901
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  206 gacaacatccacctcattaatgaattgttcaatttg 241  Q
     | |||| | ||||||||||||||||| ||||||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttg 9170901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 106 - 326
Target Start/End: Original strand, 9200333 - 9200553
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  206 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttg 305  Q
     | |||| | ||||||||||||||||| ||||||||  ||  ||| ||| |||| || ||||| | ||| |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  306 taaactgtaccaaaacctcct 326  Q
    |||||||||||||||||||||    
T  9200533 taaactgtaccaaaacctcct 9200553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 117 - 281
Target Start/End: Original strand, 9218860 - 9219024
Alignment:
Q  117 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 216  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  217 cctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaatt 281  Q
    |||||||||||||||| || || ||  ||  ||||||| |||| |||||||||| ||| ||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaatt 9219024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 289
Target Start/End: Complemental strand, 9118512 - 9118329
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  206 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc 289  Q
     | || | | ||||||||||||||||| || |||||  ||  ||||||| || | |||||||||| ||| || ||||| |||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatc 9118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 9161940 - 9162075
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  206 gacaacatccacctcattaatgaattgttcaatttg 241  Q
     | |||| | ||||| |||||||| || ||||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttg 9162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  206 gacaacatccacctcattaat 226  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 9229734 - 9229860
Alignment:
Q  106 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 205  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  206 gacaacatccacctcattaatgaattg 232  Q
     | |||| |||||||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 37567809 - 37567651
Alignment:
Q  168 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 267  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||||| || ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  268 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcct 326  Q
    ||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcct 37567651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 37572246 - 37572119
Alignment:
Q  46 tcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaagg 145  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  37572246 tcttaagacgagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgagg 37572147  T
Q  146 aacttctgtttctagacaacaccctaag 173  Q
    ||||||||||||||||||||||||||||    
T  37572146 aacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  149 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 193  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  111 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 190  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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