View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5925_high_4 (Length: 360)

Name: NF5925_high_4
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5925_high_4
NF5925_high_4
[»] chr1 (11 HSPs)
chr1 (23-350)||(1856700-1857027)
chr1 (27-350)||(1816021-1816344)
chr1 (23-343)||(1868302-1868625)
chr1 (23-343)||(1842693-1843016)
chr1 (121-256)||(9170766-9170901)
chr1 (121-346)||(9200333-9200558)
chr1 (132-296)||(9218860-9219024)
chr1 (121-304)||(9118329-9118512)
chr1 (121-256)||(9161940-9162075)
chr1 (121-241)||(9156028-9156148)
chr1 (121-247)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (183-350)||(37567642-37567809)
chr7 (61-188)||(37572119-37572246)
chr7 (164-208)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (126-205)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 1857027 - 1856700
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1857027 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 1856928  T
Q  123 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagaga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1856927 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagaga 1856828  T
Q  223 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856827 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 1856728  T
Q  323 aactgtaccaaaacctcctttacctatg 350  Q
    ||||||||||||||||||||||||||||    
T  1856727 aactgtaccaaaacctcctttacctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 27 - 350
Target Start/End: Original strand, 1816021 - 1816344
Alignment:
Q  27 agatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagag 126  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||||| ||||||||  |||| ||||||||||||| |||| ||| ||||||||||||||    
T  1816021 agatatgacagagctccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagag 1816120  T
Q  127 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1816121 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaac 1816220  T
Q  227 atccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaact 326  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  1816221 atccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaact 1816320  T
Q  327 gtaccaaaacctcctttacctatg 350  Q
    ||||||||||||||| ||||||||    
T  1816321 gtaccaaaacctcctctacctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 1868625 - 1868302
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 119  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1868625 atgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1868526  T
Q  120 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 219  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1868525 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1868426  T
Q  220 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 319  Q
    ||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1868425 agagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtccttt 1868326  T
Q  320 gtaaactgtaccaaaacctccttt 343  Q
    | |||| ||||||||||| |||||    
T  1868325 gaaaacggtaccaaaaccaccttt 1868302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 1843016 - 1842693
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 119  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1843016 atgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1842917  T
Q  120 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 219  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1842916 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1842817  T
Q  220 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 319  Q
    ||| || |   ||||||||||||||||| |  ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1842816 agagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatccttt 1842717  T
Q  320 gtaaactgtaccaaaacctccttt 343  Q
    |||||| ||||||||||| |||||    
T  1842716 gtaaacagtaccaaaaccaccttt 1842693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 9170766 - 9170901
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  221 gacaacatccacctcattaatgaattgttcaatttg 256  Q
     | |||| | ||||||||||||||||| ||||||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttg 9170901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 346
Target Start/End: Original strand, 9200333 - 9200558
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  221 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttg 320  Q
     | |||| | ||||||||||||||||| ||||||||  ||  ||| ||| |||| || ||||| | ||| |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  321 taaactgtaccaaaacctcctttacc 346  Q
    ||||||||||||||||||||| ||||    
T  9200533 taaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 296
Target Start/End: Original strand, 9218860 - 9219024
Alignment:
Q  132 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 231  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  232 cctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaatt 296  Q
    |||||||||||||||| || || ||  ||  ||||||| |||| |||||||||| ||| ||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaatt 9219024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 304
Target Start/End: Complemental strand, 9118512 - 9118329
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  221 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc 304  Q
     | || | | ||||||||||||||||| || |||||  ||  ||||||| || | |||||||||| ||| || ||||| |||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatc 9118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 9161940 - 9162075
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  221 gacaacatccacctcattaatgaattgttcaatttg 256  Q
     | |||| | ||||| |||||||| || ||||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttg 9162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  221 gacaacatccacctcattaat 241  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 9229734 - 9229860
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  221 gacaacatccacctcattaatgaattg 247  Q
     | |||| |||||||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  183 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||||| || ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  283 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 350  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 37572246 - 37572119
Alignment:
Q  61 tcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaagg 160  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  37572246 tcttaagacgagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgagg 37572147  T
Q  161 aacttctgtttctagacaacaccctaag 188  Q
    ||||||||||||||||||||||||||||    
T  37572146 aacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  164 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 208  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  126 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 205  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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