View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5925_high_6 (Length: 236)
Name: NF5925_high_6
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5925_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 18099893 - 18099703
Alignment:
| Q |
19 |
gtttgtgtcagtcacgtgaaactattattattggacaacagaacaagtatatgcaaagagacagagatgtctgtttgagttttgtccatttttgtcacga |
118 |
Q |
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| T |
18099893 |
gtttgtgtcagtcacgtgaaactattattattggacaacagaacaagtatatgcaaagagacaaagatgtctgtttgagttttgtccatttttgtcacga |
18099794 |
T |
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| Q |
119 |
gcctctcttttcaagtctcttttcgtataaacnnnnnnnnagcactagtgtatatttgcttgttataacaagatattcatatatgatgatat |
210 |
Q |
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| T |
18099793 |
gcctctcttttcaagtctcttttcgtataaac-tttttttagcactattgtatatttgcttgttataacaagatattcaaatatgatgatat |
18099703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 37857501 - 37857311
Alignment:
| Q |
19 |
gtttgtgtcagtcacgtgaaactattattattggacaacagaacaagtatatgcaaagagacagagatgtctgtttgagttttgtccatttttgtcacga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37857501 |
gtttgtgtcagtcacgtgaaactattattattggacaacagaacaagtatatgcaaagagacaaagatgtctgtttgagttttgtccatttttgtcacga |
37857402 |
T |
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| Q |
119 |
gcctctcttttcaagtctcttttcgtataaacnnnnnnnnagcactagtgtatatttgcttgttataacaagatattcatatatgatgatat |
210 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37857401 |
gcctctcttttcaagtctcttttcgtataaac-tttttttagcactattgtatatttgcttgttataacaagatattcaaatatgatgatat |
37857311 |
T |
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