View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5925_low_4 (Length: 360)

Name: NF5925_low_4
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5925_low_4
NF5925_low_4
[»] chr1 (11 HSPs)
chr1 (23-350)||(1856700-1857027)
chr1 (27-350)||(1816021-1816344)
chr1 (23-343)||(1868302-1868625)
chr1 (23-343)||(1842693-1843016)
chr1 (121-256)||(9170766-9170901)
chr1 (121-346)||(9200333-9200558)
chr1 (132-296)||(9218860-9219024)
chr1 (121-304)||(9118329-9118512)
chr1 (121-256)||(9161940-9162075)
chr1 (121-241)||(9156028-9156148)
chr1 (121-247)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (183-350)||(37567642-37567809)
chr7 (61-188)||(37572119-37572246)
chr7 (164-208)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (126-205)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 23 - 350
Target Start/End: Complemental strand, 1857027 - 1856700
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1857027 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaa 1856928  T
Q  123 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagaga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1856927 agagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacatttctgtgatttatttgagaga 1856828  T
Q  223 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856827 caacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgta 1856728  T
Q  323 aactgtaccaaaacctcctttacctatg 350  Q
    ||||||||||||||||||||||||||||    
T  1856727 aactgtaccaaaacctcctttacctatg 1856700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 27 - 350
Target Start/End: Original strand, 1816021 - 1816344
Alignment:
Q  27 agatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagag 126  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||||| ||||||||  |||| ||||||||||||| |||| ||| ||||||||||||||    
T  1816021 agatatgacagagctccagctacctcaacagctatcctaagacgagttttccaagtaagatcgttcgtcttaccttgtgtgcgaagaaattcagaaagag 1816120  T
Q  127 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaac 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1816121 taccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccccaagagtttgaccacattcctgtgatttatttgagagacaac 1816220  T
Q  227 atccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttgtaaact 326  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  1816221 atccacctcgttaatgaattgttcaatttggctttcgtctattgttttggactttttgatagccacaattctattatcatcaagttcccctttgaaaact 1816320  T
Q  327 gtaccaaaacctcctttacctatg 350  Q
    ||||||||||||||| ||||||||    
T  1816321 gtaccaaaacctcctctacctatg 1816344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 1868625 - 1868302
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 119  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1868625 atgtagatatgacaaagcttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1868526  T
Q  120 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 219  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1868525 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1868426  T
Q  220 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 319  Q
    ||| |||| ||||||||||||||||||| || ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1868425 agagaacaaccacctcattaatgaattgatcgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaagtccttt 1868326  T
Q  320 gtaaactgtaccaaaacctccttt 343  Q
    | |||| ||||||||||| |||||    
T  1868325 gaaaacggtaccaaaaccaccttt 1868302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 23 - 343
Target Start/End: Complemental strand, 1843016 - 1842693
Alignment:
Q  23 atgtagatatgacagagcctcagctacctctgcggctatcttaagacgagtcttccaagttggatcattcgtctta---ccttttgtgtgaataaattca 119  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||||| ||||| |||  || ||||  ||||   | || |||||| |||||  ||    
T  1843016 atgtagatatgacaaagtttcagctacctctgcggctatcttaagacgagttttccatgtttcattattcaccttattactttgtgtgtgtataaaacca 1842917  T
Q  120 gaaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgag 219  Q
    ||||| || |||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||    
T  1842916 gaaagggtgccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgag 1842817  T
Q  220 agacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttccccttt 319  Q
    ||| || |   ||||||||||||||||| |  ||||||||| | |||||| |||| || |||||||||||||| ||||| |||||||| ||    |||||    
T  1842816 agagaataattacctcattaatgaattgattgatttggcttctatctattatttttgattttttgatagcaacgattcttttatcatctagaaatccttt 1842717  T
Q  320 gtaaactgtaccaaaacctccttt 343  Q
    |||||| ||||||||||| |||||    
T  1842716 gtaaacagtaccaaaaccaccttt 1842693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 9170766 - 9170901
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| ||||||||||| || || |||||  ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |     
T  9170766 aaagtgtaccgttgctaacaaattcgtacaccaatgaaggaacttctgtctctagacaacaccctaggagtttgacaacattcctatgatttatttgggt 9170865  T
Q  221 gacaacatccacctcattaatgaattgttcaatttg 256  Q
     | |||| | ||||||||||||||||| ||||||||    
T  9170866 cagaacaactacctcattaatgaattgctcaatttg 9170901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 121 - 346
Target Start/End: Original strand, 9200333 - 9200558
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| ||||||||||| || || || ||  ||||||||||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||| |     
T  9200333 aaagtgtaccgttgctaacaaattcgtacactaatgaaggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggt 9200432  T
Q  221 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatcatcaagttcccctttg 320  Q
     | |||| | ||||||||||||||||| ||||||||  ||  ||| ||| |||| || ||||| | ||| |||||| | ||||||   |   | ||||||    
T  9200433 cagaacaactacctcattaatgaattgctcaatttgatttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttg 9200532  T
Q  321 taaactgtaccaaaacctcctttacc 346  Q
    ||||||||||||||||||||| ||||    
T  9200533 taaactgtaccaaaacctcctctacc 9200558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 296
Target Start/End: Original strand, 9218860 - 9219024
Alignment:
Q  132 ttgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgagagacaacatcca 231  Q
    ||||||||||| ||||| |||||| ||||||||||||| || | |||||||||||| |||||||| || ||||| ||||||||||| || | |||| | |    
T  9218860 ttgctaacaaattcatacaccaacgaaggaacttctgtctccaaacaacaccctaaaagtttgacaacgttcctatgatttatttgggacagaacaacta 9218959  T
Q  232 cctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaatt 296  Q
    |||||||||||||||| || || ||  ||  ||||||| |||| |||||||||| ||| ||||||    
T  9218960 cctcattaatgaattgctcgatctgatttgcgtctattattttggactttttgacagcgacaatt 9219024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 304
Target Start/End: Complemental strand, 9118512 - 9118329
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||| | |||||| || ||||| |||||  ||||||||||||| |||| |||||||||||| |||||||| |||||||| ||||||||||| ||    
T  9118512 aaagtgtaccgtggctaacgaattcatagaccaaggaaggaacttctgtctctaaacaacaccctaaaagtttgacaacattcctatgatttatttggga 9118413  T
Q  221 gacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttttgatagcaacaattctattatc 304  Q
     | || | | ||||||||||||||||| || |||||  ||  ||||||| || | |||||||||| ||| || ||||| |||||    
T  9118412 cagaataactacctcattaatgaattgctcgatttgatttgcgtctattattctggactttttgacagccacgattctgttatc 9118329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 9161940 - 9162075
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| |||||||||||||| || ||||| |||||| ||||||||||||| |||| |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9161940 aaagtgtaccattgctaacgaattcatacaccaacgaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9162039  T
Q  221 gacaacatccacctcattaatgaattgttcaatttg 256  Q
     | |||| | ||||| |||||||| || ||||||||    
T  9162040 cagaacaactacctcgttaatgaactgctcaatttg 9162075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 9156028 - 9156148
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| |||||||||||||| || |||||||||||  ||||||||||||| |||| |||||| || ||||||||||| ||||| |||||||||||||| ||    
T  9156028 aaagtgtaccattgctaacgaattcataaaccaaggaaggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga 9156127  T
Q  221 gacaacatccacctcattaat 241  Q
     |  ||| | |||||||||||    
T  9156128 taggacaactacctcattaat 9156148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 9229734 - 9229860
Alignment:
Q  121 aaagagtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcctgtgatttatttgaga 220  Q
    |||| ||||||||||||| ||| |||||||| |  |||||||||| ||| || | |||||| || ||||||||||| ||||| || ||||||||||| ||    
T  9229734 aaagggtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttggga 9229833  T
Q  221 gacaacatccacctcattaatgaattg 247  Q
     | |||| |||||||||| ||||||||    
T  9229834 caaaacaaccacctcatttatgaattg 9229860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 183 - 350
Target Start/End: Complemental strand, 37567809 - 37567642
Alignment:
Q  183 cctaagagtttgaccacattcctgtgatttatttgagagacaacatccacctcattaatgaattgttcaatttggcttttgtctattgttttagactttt 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||| |||||||||  ||||||||||| || ||||    
T  37567809 cctaagagtttgaccacattcctatgatttatttgagagacaatgtccacctcattaatgaattgttcattttggctttcatctattgttttggattttt 37567710  T
Q  283 tgatagcaacaattctattatcatcaagttcccctttgtaaactgtaccaaaacctcctttacctatg 350  Q
    ||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||    
T  37567709 tgatagcaacagttctattatcatctagtttccctttgaaaactgtaccaaaacctcctctacctatg 37567642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 37572246 - 37572119
Alignment:
Q  61 tcttaagacgagtcttccaagttggatcattcgtcttaccttttgtgtgaataaattcagaaagagtaccattgctaacaaactcataaaccaacaaagg 160  Q
    ||||||||||||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||  |||    
T  37572246 tcttaagacgagttttctaagttggatcattcatcttaccttgtgtgtgtataaattcagaaagagtaccattgctaacaaactcataaaccaaccgagg 37572147  T
Q  161 aacttctgtttctagacaacaccctaag 188  Q
    ||||||||||||||||||||||||||||    
T  37572146 aacttctgtttctagacaacaccctaag 37572119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 30105936 - 30105892
Alignment:
Q  164 ttctgtttctagacaacaccctaagagtttgaccacattcctgtg 208  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||    
T  30105936 ttctgtttcaagacaacagcctaagagtttgacaatattcctgtg 30105892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 40597866 - 40597787
Alignment:
Q  126 gtaccattgctaacaaactcataaaccaacaaaggaacttctgtttctagacaacaccctaagagtttgaccacattcct 205  Q
    |||||||||  || ||| |||||||| | ||| |||||||||||||||| |||||| ||||  ||||| |||||||||||    
T  40597866 gtaccattgggaataaattcataaacaagcaatggaacttctgtttctaaacaacaacctacaagttttaccacattcct 40597787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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