View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5925_low_5 (Length: 244)

Name: NF5925_low_5
Description: NF5925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5925_low_5
NF5925_low_5
[»] chr8 (2 HSPs)
chr8 (1-214)||(3385971-3386184)
chr8 (151-197)||(37466468-37466514)
[»] chr5 (1 HSPs)
chr5 (198-244)||(15807444-15807490)
[»] chr6 (3 HSPs)
chr6 (146-197)||(29734438-29734489)
chr6 (146-195)||(10401950-10401999)
chr6 (151-195)||(19680547-19680591)
[»] chr4 (7 HSPs)
chr4 (146-197)||(13483181-13483232)
chr4 (146-197)||(49649147-49649198)
chr4 (146-197)||(52353833-52353884)
chr4 (151-197)||(2472892-2472938)
chr4 (152-194)||(20943622-20943664)
chr4 (152-197)||(41534218-41534263)
chr4 (154-190)||(22593644-22593680)
[»] chr7 (3 HSPs)
chr7 (151-197)||(33316147-33316193)
chr7 (152-197)||(2443342-2443387)
chr7 (151-195)||(1694490-1694534)
[»] chr3 (2 HSPs)
chr3 (151-197)||(49492033-49492079)
chr3 (146-195)||(45301187-45301236)
[»] chr1 (1 HSPs)
chr1 (146-190)||(29823782-29823826)


Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3385971 - 3386184
Alignment:
Q  1 caaacaccaatagaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatgtttgtgg-ttctacaaatataccagctatttgttt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||| ||||||||||    
T  3385971 caaacaccaatagaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatatatgtggtttttacaaatataccaactatttgttt 3386070  T
Q  100 cagttcttataaaaagtttcttcgatttttagtccttcnnnnnnnnttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattcaaa 199  Q
    ||||||||||||||||||||||||||||||| ||||||        || |||||||| |||| ||||| |||||||||||| ||||||||| |||| |||    
T  3386071 cagttcttataaaaagtttcttcgatttttaatccttcaaaaaaattt-aacttcacatttaatctctccttttaagtaaatttatatgtataatttaaa 3386169  T
Q  200 tggtatggtaataca 214  Q
    || ||||| ||||||    
T  3386170 tgatatggcaataca 3386184  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 37466514 - 37466468
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||||||    
T  37466514 cttcactttttgtctctcctttaaagtaaactcatatgtaaaattca 37466468  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 15807490 - 15807444
Alignment:
Q  198 aatggtatggtaatacaccattactgatattggttatctgtgctcct 244  Q
    |||| ||||| |||||||||||||||||||||| |||||||||||||    
T  15807490 aatgttatggcaatacaccattactgatattggctatctgtgctcct 15807444  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 29734438 - 29734489
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||| ||||||    
T  29734438 ttcatcttcacttctagtctctcattttaagtaaacttatatgtagaattca 29734489  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 10401950 - 10401999
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 195  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  10401950 ttcagcttcacttttggtctcttctttaaagtaaactcatatgtataatt 10401999  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 19680547 - 19680591
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 195  Q
    |||||||||| ||| || |||| ||||||||||||||||||||||    
T  19680547 cttcacttttggtccctcctttaaagtaaacttatatgtaaaatt 19680591  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 13483232 - 13483181
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||| ||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  13483232 ttcatcttcacttttgatctcttctttaaagtaaactcatatgtaaaattca 13483181  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 49649198 - 49649147
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  49649198 ttcatcttcacttttggtctcttctttaaagtaaactcatatgtataattca 49649147  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 52353833 - 52353884
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  52353833 ttcatcttcaattttagtctcttctttaaagtaaactcatatgtagaattca 52353884  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 2472938 - 2472892
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||    
T  2472938 cttcacttttggtctctccttttaagtaaactagtatgtaaaattca 2472892  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 20943664 - 20943622
Alignment:
Q  152 ttcacttttagtctcttcttttaagtaaacttatatgtaaaat 194  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  20943664 ttcacttttagtccctcctttaaagtaaacttatatgtaaaat 20943622  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 41534218 - 41534263
Alignment:
Q  152 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  41534218 ttcatttttagtctcttctttaaagtaaactaatatataaaattca 41534263  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Original strand, 22593644 - 22593680
Alignment:
Q  154 cacttttagtctcttcttttaagtaaacttatatgta 190  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  22593644 cacttttagtctctacttttaagtaaacttatgtgta 22593680  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 33316147 - 33316193
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  33316147 cttcacttttggtcacttctttaaagtaaactcatatgtaaaattca 33316193  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 2443342 - 2443387
Alignment:
Q  152 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    ||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  2443342 ttcacttttggtctcttctttaaagtaaactcatatgtagaattca 2443387  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 1694490 - 1694534
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 195  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||    
T  1694490 cttcacttttggtctcttctttaaagtaaactcatatataaaatt 1694534  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 49492079 - 49492033
Alignment:
Q  151 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 197  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||||    
T  49492079 cttcacttttggtctcttcttttaagtaaactcatgtgtagaattca 49492033  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 45301236 - 45301187
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 195  Q
    |||| |||||||||||||||| ||||| ||||||||| |||| |||||||    
T  45301236 ttcatcttcacttttagtctcatctttaaagtaaactcatatttaaaatt 45301187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 29823826 - 29823782
Alignment:
Q  146 ttcaacttcacttttagtctcttcttttaagtaaacttatatgta 190  Q
    |||| |||||||||| |||||| |||||||||||||| |||||||    
T  29823826 ttcatcttcacttttggtctctccttttaagtaaactcatatgta 29823782  T

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