View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5926-Insertion-1 (Length: 867)
Name: NF5926-Insertion-1
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 364 - 867
Target Start/End: Original strand, 36982859 - 36983361
Alignment:
| Q |
364 |
aattgtttaactgctctaaaactaaattgtgccattgtgctataattaactcggtatatgaagcttttattacaggtacaaactgttatttggtctaaac |
463 |
Q |
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| T |
36982859 |
aattgtttaactgctctaaaactaaattgtgccattgtgctataattaactcggtatatgaagcttttattacaggtacaaactgttatttggtctaaac |
36982958 |
T |
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| Q |
464 |
aagtaaacacattagtggtttattaacagaatactacttaaaaagactacactttgcaggacaatagttgggacaaagaccacttccatcaatgataaat |
563 |
Q |
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| T |
36982959 |
aagtaaacacattagtggtttattaacagaatactacttaaaaagactacactttgcaggacaatagttgggacaaagaccacttccatcaatgataaat |
36983058 |
T |
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| Q |
564 |
tgaccatttttactcatgttcacctcagcttaattagttgcttaccactttaataatattaacatcaagctttcagcccatagtggattttattgtttat |
663 |
Q |
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| T |
36983059 |
tgaccatttttactcatgttcacctcagcttaattagttgcttaccactttaataatcttaacatcaagctttcagcccatagtggattttattggttat |
36983158 |
T |
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| Q |
664 |
gaaccaaccttttgatcggtaagctatcgcttaagtaacatgaattgaacttgtttggttcgggtcaggtatgatgtcaaaactgtccatataaattatt |
763 |
Q |
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| T |
36983159 |
gaaccaaccttttgatcggtaagctatcgcctaagtaacatgaattgaacttgtttggttc-ggtcaggtatgatgtcaaaactgtccatataaattatt |
36983257 |
T |
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| Q |
764 |
agttttagttgaagaaaatagagacatttttatggttatccataaacctcgaacaagaaacaattctaatcaatcccaggttctaactgtatacaattcc |
863 |
Q |
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| T |
36983258 |
agttttagttgaagaaaatagagacatctttatggttatccataaacctcgaacaagaaacaattctaatcaatcccaggttctaattgtatacaattcc |
36983357 |
T |
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| Q |
864 |
atca |
867 |
Q |
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| T |
36983358 |
atca |
36983361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 36982528 - 36982888
Alignment:
| Q |
9 |
gttttcgtaagttcttctcgaacagtctcacaaaacttatgtcaatccaaacgggccctaagtctgtgtatattttaaaaattgttaatagattatgagt |
108 |
Q |
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| T |
36982528 |
gttttcgtaagttcttctcgaacagtctcacaaaacttatgtcaatccaaacgggccctaagtctgtgtatattttaaaaattgttaatagattatgagt |
36982627 |
T |
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| Q |
109 |
atagtgtaagagattaataaatgagaggatgttaactgagaataagtaataatgttttgtaacagaaatggagtccttatcaactggtgtaggaagcaaa |
208 |
Q |
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| T |
36982628 |
atagtgtaagagattaataaatgagaggatgttaactgagaataagtaataatgttttgtaacagaaatggagtccttatcaactggtgtaggaagcaaa |
36982727 |
T |
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| Q |
209 |
tcgaagccatgtaccaagtttttcaggttataatctactcctgtctaaataaattataagtaataatgttatattttgaaatgccataatttctactttt |
308 |
Q |
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| T |
36982728 |
tcgaagccatgtaccaagtttttcaggttataatctacccctgtctaaataaattataagtaataatgttatattttgaaatgccataatttctactttt |
36982827 |
T |
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| Q |
309 |
aatagcattatattataannnnnnnagaatcaattgttgaactgctttaaaacttaattgt |
369 |
Q |
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| T |
36982828 |
aatagcattatattataatttttttagaatcaattgtttaactgctctaaaactaaattgt |
36982888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 188 - 262
Target Start/End: Original strand, 22948341 - 22948415
Alignment:
| Q |
188 |
tcaactggtgtaggaagcaaatcgaagccatgtaccaagtttttcaggttataatctactcctgtctaaataaat |
262 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||| |||||| |||| |
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| T |
22948341 |
tcaactggtgtaggaagcaaaacgaagccttgtaccaagtttttcaggttctaatctattcctatctaaacaaat |
22948415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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