View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5926-Insertion-2 (Length: 845)
Name: NF5926-Insertion-2
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 426 - 841
Target Start/End: Original strand, 39246451 - 39246865
Alignment:
| Q |
426 |
aagttataagagaccgcgccatcttatctaaacgctctgggctagatgatcttatatacaaggaaaat-atatttttgcaaaaagatcttacaatgaagg |
524 |
Q |
| |
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||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
39246451 |
aagttataagagaccgcaccatctcatctaaatgctctgggctagatgatcttatatacaaggaaaaacatatttttgcaaaaagaacttataatgaagg |
39246550 |
T |
|
| Q |
525 |
agggaggaagtttatgtgtgtgtatatagtttcacataaccattaaagctttttagatttgatatatcccacttatttagttatatagcactttctgttt |
624 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246551 |
agggaggaagtttatgtgtgtgtatatagtttcacataatcattaaagctttttagatttgatatatcccacttatttagttatatagcactttctgttt |
39246650 |
T |
|
| Q |
625 |
catgaatttgttctataatataaatagtggttttagtcagcttcaagagtcgacattaaaaatcctcaaataccactacacattcaagctcatcaagcat |
724 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246651 |
catgaatttgttctataatataaatagtggttttagtcagcttcaagagtcgacatt-aaaatcctcaaataccactacacattcaagctcatcaagcat |
39246749 |
T |
|
| Q |
725 |
agtagctcccactttacagcacattgtcccaactaattcaaatcaagtttatcacattcacatggcaaacacacaaataactatatttgcgctaataatc |
824 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246750 |
agtagctcccactttacagcacattgt-ccaactaattcaaatcaagtttatcacattcacatggcaaacacacaaataactatatttgcgctaataatc |
39246848 |
T |
|
| Q |
825 |
ttcaccaccttcttgtt |
841 |
Q |
| |
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||||||||||||||||| |
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| T |
39246849 |
ttcaccaccttcttgtt |
39246865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 369
Target Start/End: Original strand, 39246094 - 39246452
Alignment:
| Q |
9 |
atattcccttggttttctgtgtattccgcagagcaataattttgattggccaaattagttttc-ggaagcttttgtgagaattatttcgcgggacataac |
107 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
39246094 |
atattcccttggttttccgtgtattccgtagagcaacaattttgattggccaaattagttttcaggaagctttcgtgagaattatttcgcgggacataac |
39246193 |
T |
|
| Q |
108 |
aatgctcttactaaattactatcttttgtgtataaatatattcaatattaactttttattttatnnnnnnnnttggtagtatgttttgaggaaaacaaat |
207 |
Q |
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|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39246194 |
aatgctcttactaaatta---tcttttgtgtgtaaatatattcaatattaactttttattttataaaaaaaattggtagtatgttttgaggaaaacaaat |
39246290 |
T |
|
| Q |
208 |
tggcactattgatagatgatatatttgaaaaataagtaataaatacatctagaaatttgtagataattttttgtgtgtaaactaagtatcatccgcacgc |
307 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
39246291 |
tggcactattgatagatgatatatttgaaaaataagtaataaatacatctagaaatttgtagatgattttttgtgtgtaaactaagtatcatccgtgcgc |
39246390 |
T |
|
| Q |
308 |
aacagtggagactagtctctcgaactttatgggacccaaataggcgtcaaattctcctgaaa |
369 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
39246391 |
aacaatggagactagtctctcgagctttatgggattcaaataggcgtcaaattctcctgaaa |
39246452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 30977535 - 30977503
Alignment:
| Q |
242 |
agtaataaatacatctagaaatttgtagataat |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
30977535 |
agtaataaatacatctagaaatttgtagataat |
30977503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 39308104 - 39308174
Alignment:
| Q |
27 |
gtgtattccgcagagcaataattttgattggccaaattagttttcggaagcttttgtgagaattatttcgc |
97 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||| ||||||| |||||| ||||||||||||||| |
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| T |
39308104 |
gtgtattccgcaaagcaacaactttgattggccaaattgattttcgggagctttcttgagaattatttcgc |
39308174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 35972506 - 35972424
Alignment:
| Q |
282 |
gtgtaaactaagtatcatccgcacgcaacagtggagactagtctctcgaactttatgggacccaaataggcgtcaaattctcc |
364 |
Q |
| |
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|||||||||| ||||| |||||||||||| | |||||||| || ||||||| | |||||||||||| |||| |||| ||||| |
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| T |
35972506 |
gtgtaaactaggtatcctccgcacgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctcc |
35972424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 47919266 - 47919186
Alignment:
| Q |
18 |
tggttttctgtgtattccgcagagcaataattttgattggccaaattagttttcgg-aagcttttgtgagaattatttcgc |
97 |
Q |
| |
|
|||||||| ||| |||||| | ||||| |||||||||| |||||||| ||||||| ||||||| ||||||||||||||| |
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|
| T |
47919266 |
tggttttccgtgcattccgaaaagcaacaattttgatttgccaaattgattttcgggaagctttcttgagaattatttcgc |
47919186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 242 - 272
Target Start/End: Original strand, 29217645 - 29217675
Alignment:
| Q |
242 |
agtaataaatacatctagaaatttgtagata |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
29217645 |
agtaataaatacatctagaaatttgtagata |
29217675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 48548216 - 48548258
Alignment:
| Q |
225 |
gatatatttgaaaaataagtaataaatacatctagaaatttgt |
267 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
48548216 |
gatatatttgaaaaatgaataataaatacatctaaaaatttgt |
48548258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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