View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5926-Insertion-3 (Length: 780)
Name: NF5926-Insertion-3
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 14 - 780
Target Start/End: Original strand, 52835664 - 52836435
Alignment:
| Q |
14 |
atctggccaatcagtttaagtttgttagaaatcagaaagaatgaaaatagagaatatatgagagaaacttcaatatactgctatttgtatcgatactgtt |
113 |
Q |
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| T |
52835664 |
atctggccaatcagtttaagtttgttagaaatcagaaagaatgaaaatagagaatatatgagagaaacttcaatatactgctatttgtattgatactgtt |
52835763 |
T |
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| Q |
114 |
taattctgtttnnnnnnnn-gggaatcaactatttatttataaagaagaggacaattattagcttttgagcacacttgaaagttgaaactgttcaattat |
212 |
Q |
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| T |
52835764 |
taattctgttaaaaaaaaaagggaatcaactatttatttataaagaagaggacaattattagcttttgagcacacttgaaagttgaaactgttcaattat |
52835863 |
T |
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| Q |
213 |
gccaataaaagaatcctcgccacttgaagcacctaaagccgtcggcaatcagtttgttatggaaagaaggctcaaggccatataatgataattgtaaaac |
312 |
Q |
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| T |
52835864 |
gccaataaaagaatactcgccacttgaagcacctaaagccgtcggcaatcagtt-gttatggaaagaaggctcaaggccatataatgataattgtaaaac |
52835962 |
T |
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| Q |
313 |
aatggtagcatgtaacagaactatgtgttcaaaatgaatttgaactaatggtgtattagaagtcgtgcctacggttagaagatttgtttctttcctgaat |
412 |
Q |
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| T |
52835963 |
aatggtagcatgtaacagaactatgtgttcaaaatgaatttgaactaatggtgtattagaagtcgtgcctacggttagaagatttgtttctttcctgaat |
52836062 |
T |
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| Q |
413 |
ttcatgaagaagaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttacaagcctctggactctctccaaattgaatggg |
512 |
Q |
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| T |
52836063 |
ttcatgaaaaagaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttgcaagcctctggactctctccaaattgaacggg |
52836162 |
T |
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| Q |
513 |
aacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtgtattcattattgc |
612 |
Q |
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| T |
52836163 |
aacgacatgacaaggtatttagtgtgatgaggaagtccatcttttgtattttgtgttagtatggtgcc-atgtataaaaaggaagtgtattcattattgc |
52836261 |
T |
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| Q |
613 |
tgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaa------acattgatagaggctgctggcatt |
706 |
Q |
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| T |
52836262 |
tgccttttcaggaaagaacattggaagaacacaaaaagttggttgacagggttatgaaacgtgacaaaaaagtcggaaaatgatagaggctgctggcatt |
52836361 |
T |
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| Q |
707 |
gattatgaatgtccccagattgtgagcttttttgcctttcttttactgattagttgttttcattgtccatgtct |
780 |
Q |
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| T |
52836362 |
gattatgaatgtccccagattgtgagctttttagcctttcttttactgattagttgttttcattgtccatgtct |
52836435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 394 - 776
Target Start/End: Complemental strand, 48967904 - 48967517
Alignment:
| Q |
394 |
atttgtttctttcctgaatttcatgaagaagaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttacaagcctctggac |
493 |
Q |
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| T |
48967904 |
atttgtttcttttcttaacataatcaagaaaaataaattaaaaggtgggatttttctttgtagatggaaaggattcaattaccgctacaagcccttggac |
48967805 |
T |
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| Q |
494 |
tctctccaaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaag |
593 |
Q |
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| T |
48967804 |
acactccaaattgaacgagagctacatgacaaggtatctagtgtgatgaggaagtatatcatttgtatttagt--tactctggtgctc-tgtataaaaag |
48967708 |
T |
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| Q |
594 |
gaagtgtattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaaac-------at |
686 |
Q |
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| T |
48967707 |
aaaatgtactaattattgttattatttcaggaaagaacattggaagaacacaaaaagttggttgatagagttatgaagcgtgacaaaaaacgacgtaaaa |
48967608 |
T |
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| Q |
687 |
tgatagaggctgctggcattgattatgaatgtccccagattgtgagctttttt-gcctttcttttactgattagttgttttcattgtccat |
776 |
Q |
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| T |
48967607 |
agatagaggctgctggcattgattatgaatgtcctgagattgtgagcttttttcgcctttctttgactgattagttgttttgatagtccat |
48967517 |
T |
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