View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5926-Insertion-4 (Length: 214)
Name: NF5926-Insertion-4
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 13978946 - 13979016
Alignment:
| Q |
144 |
ctaaatatcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttgg |
214 |
Q |
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| T |
13978946 |
ctaaatatcttgctgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttgg |
13979016 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 13976994 - 13977059
Alignment:
| Q |
57 |
tgatcatagaaaattacactcaatttaaaaaatgatacacccatgttccatctaaaaaacactcaa |
122 |
Q |
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| T |
13976994 |
tgatcatagaaaattacactcaatttaaaaaatgatacacccatgttccatctaaaaaacactcaa |
13977059 |
T |
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 18044704 - 18044767
Alignment:
| Q |
150 |
atcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttg |
213 |
Q |
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| T |
18044704 |
atcttggtgtgttatactgactaacagatgttcctaatcccaagtaatgatcaagaatcttttg |
18044767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 48369932 - 48369869
Alignment:
| Q |
150 |
atcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttg |
213 |
Q |
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| T |
48369932 |
atcttggtgttttatactgactaacagctgttcctaatccaaggtaatgatcaagaatcttttg |
48369869 |
T |
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