View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5926_high_4 (Length: 245)
Name: NF5926_high_4
Description: NF5926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5926_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 29555238 - 29555332
Alignment:
| Q |
18 |
agaaggttcatttgaccatgttattcaaggttgtcatggtgtttttcataccgcttcacctgctcattttgttgtcgacgaccctcaggtcacga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29555238 |
agaaggttcatttgaccatgttattcaaggttgtcatggtgtttttcataccgcttcacctgctcattttgttgtcgacgaccctcaggtcacga |
29555332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 29549029 - 29549118
Alignment:
| Q |
18 |
agaaggttcatttgaccatgttattcaaggttgtcatggtgtttttcataccgcttcacctgctcattttgttgtcgacgaccctcaggt |
107 |
Q |
| |
|
||||||||| ||||| |||||||||||| || |||||||| |||||||| |||||||| | ||||||||| ||| |||||||||||| |
|
|
| T |
29549029 |
agaaggttcctttgattctgttattcaaggatgccatggtgtctttcatactgcttcacccgttcattttgtcgtcaccgaccctcaggt |
29549118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University